Definition Nocardioides sp. JS614 chromosome, complete genome.
Accession NC_008699
Length 4,985,871

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The map label for this gene is yihQ [H]

Identifier: 119716689

GI number: 119716689

Start: 2620902

End: 2623208

Strand: Direct

Name: yihQ [H]

Synonym: Noca_2463

Alternate gene names: 119716689

Gene position: 2620902-2623208 (Clockwise)

Preceding gene: 119716688

Following gene: 119716690

Centisome position: 52.57

GC content: 75.6

Gene sequence:

>2307_bases
GTGCCCCCGCGTCGCCTGCTGATCCGACTCGCCCTCGCGCTGAACCTCGCGCTGGCCCTCCCGGTGGCCCTCGTCGCCCC
CGGTGCCGTCGAGGCCGCCGCACCCCGGGCCGCCGGGGTCCCCGTGGACCTGGTCGACACCGTGACGCCGGGCAGCCTCG
ACGTCACGCCCGGCGCCACCGGGACCTGGACCGTCGGCGACCTGACGGTGGACGTCAGCGCGGCCGCGGGATTGAGCGTG
CGGTCCGGCTCCCGGACCGTGTGGGCGGCCCCACCCGGTGGCGCCTTCGTGACCGGCGGCCGCGGGTCGGTCTCCTGGGA
GGAGCACCGGGGCTACTTCTGGCCGACCGTGTCCTACACCGACCGGCTCACCGAGCAGAGCGTCGACACGGTGCAGGCCT
CGGCCGACGACATCGTGCTCACCGGCCGGCTCAGCGGCCCGCTGGCTCCGGGCGGCGACGCGGCGTACACGCTGACCGTG
CGGGCCCGCGCGGCCGGGGGAGCGGCGCTCGACCTGACCAGCTCGGCGGCTGTCCCGCTGACCTCGGTGGCCCTGGTGTC
CGGCCGCTCGGCGCATGCCGGCGTGCACGGCTTCGGTGAGCAGTTCAGCGACTTCGACCTCGACGGCCGGCTGCTGCCCA
TCGTCGCCCGGGAGCAGGGCGTCGGCCGCGGCGAGGAGCCGATCACCTCCCTCGCGGACGCGACCAACCACGGCGCGGGC
GGGACCAGGGACATGACCTACGCCGCCTGGCCCTCCTTCGTCACCGACGATCTCCGCGGCCTGCGCCTGGACGCGGCCGC
CTCCTCGTCGACGGCGTTCGCGGTCGCCGACACCCGGGACCCCGACGCGGTCGCGCTCGAGCTGTGGTCGCCCACGCTCT
CGGCGCAGGCGTCCGCGGCCGCGACGCCCGCGCGGCTGGTCGCCGCCCAGCAGGCGGGTGACCAGCGGCGCCCGCTGGCG
CGCTGGGCCACCCGCGGCGCCATCGTCGGCCTCCAGGGCGGCACCCAGGAGGTACGTCGCGAGCTGGGCCGGCTCCTCGA
CGCGGGCGCGAACGTGTCCGGGGTCTGGATCCAGGACTGGACCGGCAAGCGCACCACCTCGTTCGGTGACCGGCTGTGGT
GGACCTGGCAGCTGGACCGGGAGCGCTACCCAGGCTGGGCCCGGCTCGTGCGCCGGCTCTCGGCGCTCGGGATCACGACG
ACCACCTACGTCAACCCGTTCCTGGTCGATGCCGCACCCAAGGGGGATCCCGGCATCCGGAACCTGTGGGCCGAGGCCCG
TGACCGAGGATTCCTGGTCACCGACGAGTCGGGCGCGCCGTACGCCCTGGACCAGGGTGAGTTCGAGGCGTCGCTGGTCG
ACCTGACCGACCCGGCCGCCCGGTCCTGGTTCGCCGAGGTGATCGCCCGCTACGTGCTCGCCGACGGGGTGCGCGGCTTC
ATGGCCGACTTCGCCGAGGGTCTGCCCTTCGACGCGCGGCTGCACACCGGCACTCCCGCCACGCTGCACAACCGTTGGCC
GGCGCTGTGGGCGAGGACGGTGCGGCTGGCCTGCCGACGGGCCGAGCAGCCTCGGTGCGTCACGTGGTTCCGCAGCGGCG
CCCTCGGCCAGGCGGCGCACGCCCCGCTGTTCTGGAACGGCGACCAGCTGGTCACCTTCGGCCGCGAGGACGGCCTCGCG
TCCGCGCTCCTGGGGACGCTGTCGGCGGGCGTCTCCGGGTGGCCGCTGGTCCACTCGGACGTCGGCGGCTACACCTCGGT
CAACGCGGTCGTGAAGAACTACGTCCGGACGCCGGAGCTGCTGGCCAGGTGGGCGGAGTTCCAGGCGTTCGGGGTCGTGC
TGCGCACCCACGAGGGCAACCGGCCGGCGGACAACCCCCAGGTCTTCAGCACCCGCGACACCGCTCGCGCCTTCGCCCGG
TCGACCCGGATCTTCGGCGCGCTGGCGCCGTACCGCGACCGGGTCGTCCGCGCGGCGACCCGCACGGGCGTCCCGGCGGT
GCGCCCGATCTGGCTGGTCGCACCGGGCTCGTCGGCTGCGGCGTCCGACACCGAGTTCTTCCTCGGCCGGCACGTGCTCG
TCGCACCGGTCCTGGAGGCCGGGGCCACCTCCGTGCCGGTGATCCTCCCGCCCGGCCGGTGGGTGCACCTGTTCACCGGA
CGCGGGTACGCCGGAGACCGGACCGTGACCGTGCCCGCGCCGATCGGGCGCCCGGCCGCCTTCGTGCGGGAGGGCGGGCC
GTGGTCGACGCGGCTCCCCGCACGGTTCCGGGCCGCCGGACTGACTGCTCTAGGCTCGGGGGCGTGA

Upstream 100 bases:

>100_bases
ATCCCGATCTACGGCCGCGCCGAGAGCCTCAACCTGTCCACCGCGGCGGCACTCTGCCTTTACGCCTCGGCCCGGGTCCA
GCGTCGGTAACCTCGCGGCC

Downstream 100 bases:

>100_bases
GCCAGGCGGACCTCGACGCGCTCGCCGACGGCACCGTGCTGGCCGGCCCCGACGGCCGGGTCACCGCGGTCAACGTGGCC
GCCGCCCGGCTCCTCGGCGC

Product: alpha-glucosidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 768; Mature: 767

Protein sequence:

>768_residues
MPPRRLLIRLALALNLALALPVALVAPGAVEAAAPRAAGVPVDLVDTVTPGSLDVTPGATGTWTVGDLTVDVSAAAGLSV
RSGSRTVWAAPPGGAFVTGGRGSVSWEEHRGYFWPTVSYTDRLTEQSVDTVQASADDIVLTGRLSGPLAPGGDAAYTLTV
RARAAGGAALDLTSSAAVPLTSVALVSGRSAHAGVHGFGEQFSDFDLDGRLLPIVAREQGVGRGEEPITSLADATNHGAG
GTRDMTYAAWPSFVTDDLRGLRLDAAASSSTAFAVADTRDPDAVALELWSPTLSAQASAAATPARLVAAQQAGDQRRPLA
RWATRGAIVGLQGGTQEVRRELGRLLDAGANVSGVWIQDWTGKRTTSFGDRLWWTWQLDRERYPGWARLVRRLSALGITT
TTYVNPFLVDAAPKGDPGIRNLWAEARDRGFLVTDESGAPYALDQGEFEASLVDLTDPAARSWFAEVIARYVLADGVRGF
MADFAEGLPFDARLHTGTPATLHNRWPALWARTVRLACRRAEQPRCVTWFRSGALGQAAHAPLFWNGDQLVTFGREDGLA
SALLGTLSAGVSGWPLVHSDVGGYTSVNAVVKNYVRTPELLARWAEFQAFGVVLRTHEGNRPADNPQVFSTRDTARAFAR
STRIFGALAPYRDRVVRAATRTGVPAVRPIWLVAPGSSAAASDTEFFLGRHVLVAPVLEAGATSVPVILPPGRWVHLFTG
RGYAGDRTVTVPAPIGRPAAFVREGGPWSTRLPARFRAAGLTALGSGA

Sequences:

>Translated_768_residues
MPPRRLLIRLALALNLALALPVALVAPGAVEAAAPRAAGVPVDLVDTVTPGSLDVTPGATGTWTVGDLTVDVSAAAGLSV
RSGSRTVWAAPPGGAFVTGGRGSVSWEEHRGYFWPTVSYTDRLTEQSVDTVQASADDIVLTGRLSGPLAPGGDAAYTLTV
RARAAGGAALDLTSSAAVPLTSVALVSGRSAHAGVHGFGEQFSDFDLDGRLLPIVAREQGVGRGEEPITSLADATNHGAG
GTRDMTYAAWPSFVTDDLRGLRLDAAASSSTAFAVADTRDPDAVALELWSPTLSAQASAAATPARLVAAQQAGDQRRPLA
RWATRGAIVGLQGGTQEVRRELGRLLDAGANVSGVWIQDWTGKRTTSFGDRLWWTWQLDRERYPGWARLVRRLSALGITT
TTYVNPFLVDAAPKGDPGIRNLWAEARDRGFLVTDESGAPYALDQGEFEASLVDLTDPAARSWFAEVIARYVLADGVRGF
MADFAEGLPFDARLHTGTPATLHNRWPALWARTVRLACRRAEQPRCVTWFRSGALGQAAHAPLFWNGDQLVTFGREDGLA
SALLGTLSAGVSGWPLVHSDVGGYTSVNAVVKNYVRTPELLARWAEFQAFGVVLRTHEGNRPADNPQVFSTRDTARAFAR
STRIFGALAPYRDRVVRAATRTGVPAVRPIWLVAPGSSAAASDTEFFLGRHVLVAPVLEAGATSVPVILPPGRWVHLFTG
RGYAGDRTVTVPAPIGRPAAFVREGGPWSTRLPARFRAAGLTALGSGA
>Mature_767_residues
PPRRLLIRLALALNLALALPVALVAPGAVEAAAPRAAGVPVDLVDTVTPGSLDVTPGATGTWTVGDLTVDVSAAAGLSVR
SGSRTVWAAPPGGAFVTGGRGSVSWEEHRGYFWPTVSYTDRLTEQSVDTVQASADDIVLTGRLSGPLAPGGDAAYTLTVR
ARAAGGAALDLTSSAAVPLTSVALVSGRSAHAGVHGFGEQFSDFDLDGRLLPIVAREQGVGRGEEPITSLADATNHGAGG
TRDMTYAAWPSFVTDDLRGLRLDAAASSSTAFAVADTRDPDAVALELWSPTLSAQASAAATPARLVAAQQAGDQRRPLAR
WATRGAIVGLQGGTQEVRRELGRLLDAGANVSGVWIQDWTGKRTTSFGDRLWWTWQLDRERYPGWARLVRRLSALGITTT
TYVNPFLVDAAPKGDPGIRNLWAEARDRGFLVTDESGAPYALDQGEFEASLVDLTDPAARSWFAEVIARYVLADGVRGFM
ADFAEGLPFDARLHTGTPATLHNRWPALWARTVRLACRRAEQPRCVTWFRSGALGQAAHAPLFWNGDQLVTFGREDGLAS
ALLGTLSAGVSGWPLVHSDVGGYTSVNAVVKNYVRTPELLARWAEFQAFGVVLRTHEGNRPADNPQVFSTRDTARAFARS
TRIFGALAPYRDRVVRAATRTGVPAVRPIWLVAPGSSAAASDTEFFLGRHVLVAPVLEAGATSVPVILPPGRWVHLFTGR
GYAGDRTVTVPAPIGRPAAFVREGGPWSTRLPARFRAAGLTALGSGA

Specific function: Exhibits hydrolysis activity against alpha-glucosyl fluoride, although natural substrates, such as alpha-glucobioses are scarcely hydrolyzed [H]

COG id: COG1501

COG function: function code G; Alpha-glucosidases, family 31 of glycosyl hydrolases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 31 family [H]

Homologues:

Organism=Homo sapiens, GI153791946, Length=421, Percent_Identity=27.0783847980998, Blast_Score=86, Evalue=1e-16,
Organism=Escherichia coli, GI2367323, Length=603, Percent_Identity=35.3233830845771, Blast_Score=369, Evalue=1e-103,
Organism=Escherichia coli, GI2367256, Length=361, Percent_Identity=26.8698060941828, Blast_Score=123, Evalue=5e-29,
Organism=Caenorhabditis elegans, GI17560798, Length=396, Percent_Identity=24.4949494949495, Blast_Score=82, Evalue=7e-16,
Organism=Caenorhabditis elegans, GI17560800, Length=396, Percent_Identity=24.4949494949495, Blast_Score=82, Evalue=7e-16,
Organism=Caenorhabditis elegans, GI32563849, Length=209, Percent_Identity=31.5789473684211, Blast_Score=75, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI71985706, Length=207, Percent_Identity=28.0193236714976, Blast_Score=69, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24650054, Length=421, Percent_Identity=25.6532066508314, Blast_Score=96, Evalue=9e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011013
- InterPro:   IPR000322
- InterPro:   IPR017853 [H]

Pfam domain/function: PF01055 Glyco_hydro_31 [H]

EC number: =3.2.1.20 [H]

Molecular weight: Translated: 81252; Mature: 81121

Theoretical pI: Translated: 9.23; Mature: 9.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPPRRLLIRLALALNLALALPVALVAPGAVEAAAPRAAGVPVDLVDTVTPGSLDVTPGAT
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCEEHECCCCCCCEEECCCCC
GTWTVGDLTVDVSAAAGLSVRSGSRTVWAAPPGGAFVTGGRGSVSWEEHRGYFWPTVSYT
CEEEEEEEEEEEECCCCCEEECCCEEEEECCCCCEEEECCCCCCCHHHCCCEECCCCCHH
DRLTEQSVDTVQASADDIVLTGRLSGPLAPGGDAAYTLTVRARAAGGAALDLTSSAAVPL
HHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEEEEECCCCEEEEECCCCCCCC
TSVALVSGRSAHAGVHGFGEQFSDFDLDGRLLPIVAREQGVGRGEEPITSLADATNHGAG
EEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHCCCCCCC
GTRDMTYAAWPSFVTDDLRGLRLDAAASSSTAFAVADTRDPDAVALELWSPTLSAQASAA
CCCCCEEECCCCHHHHHHCCEEEECCCCCCCEEEEECCCCCCEEEEEECCCCCCCCCCCC
ATPARLVAAQQAGDQRRPLARWATRGAIVGLQGGTQEVRRELGRLLDAGANVSGVWIQDW
CCHHHHHHHHHCCCCCCHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCCCEEEEECC
TGKRTTSFGDRLWWTWQLDRERYPGWARLVRRLSALGITTTTYVNPFLVDAAPKGDPGIR
CCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCEEEHCCCEEEEECCCCCCCHHH
NLWAEARDRGFLVTDESGAPYALDQGEFEASLVDLTDPAARSWFAEVIARYVLADGVRGF
HHHHHHCCCCEEEECCCCCCEEECCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
MADFAEGLPFDARLHTGTPATLHNRWPALWARTVRLACRRAEQPRCVTWFRSGALGQAAH
HHHHHHCCCCCCEEECCCCCHHHCCCHHHHHHHHHHHHHHCCCCCEEEHHHCCCCCCHHC
APLFWNGDQLVTFGREDGLASALLGTLSAGVSGWPLVHSDVGGYTSVNAVVKNYVRTPEL
CCEEECCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHCCCHHH
LARWAEFQAFGVVLRTHEGNRPADNPQVFSTRDTARAFARSTRIFGALAPYRDRVVRAAT
HHHHHHHHEEEEEEEECCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
RTGVPAVRPIWLVAPGSSAAASDTEFFLGRHVLVAPVLEAGATSVPVILPPGRWVHLFTG
HCCCCCCCEEEEEECCCCCCCCCCHHHHCCHHHHHHHHHCCCCCCCEEECCCCEEEEEEC
RGYAGDRTVTVPAPIGRPAAFVREGGPWSTRLPARFRAAGLTALGSGA
CCCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCHHHHCCCCCCCCCC
>Mature Secondary Structure 
PPRRLLIRLALALNLALALPVALVAPGAVEAAAPRAAGVPVDLVDTVTPGSLDVTPGAT
CHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCEEHECCCCCCCEEECCCCC
GTWTVGDLTVDVSAAAGLSVRSGSRTVWAAPPGGAFVTGGRGSVSWEEHRGYFWPTVSYT
CEEEEEEEEEEEECCCCCEEECCCEEEEECCCCCEEEECCCCCCCHHHCCCEECCCCCHH
DRLTEQSVDTVQASADDIVLTGRLSGPLAPGGDAAYTLTVRARAAGGAALDLTSSAAVPL
HHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEEEEECCCCEEEEECCCCCCCC
TSVALVSGRSAHAGVHGFGEQFSDFDLDGRLLPIVAREQGVGRGEEPITSLADATNHGAG
EEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHCCCCCCC
GTRDMTYAAWPSFVTDDLRGLRLDAAASSSTAFAVADTRDPDAVALELWSPTLSAQASAA
CCCCCEEECCCCHHHHHHCCEEEECCCCCCCEEEEECCCCCCEEEEEECCCCCCCCCCCC
ATPARLVAAQQAGDQRRPLARWATRGAIVGLQGGTQEVRRELGRLLDAGANVSGVWIQDW
CCHHHHHHHHHCCCCCCHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCCCEEEEECC
TGKRTTSFGDRLWWTWQLDRERYPGWARLVRRLSALGITTTTYVNPFLVDAAPKGDPGIR
CCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCEEEHCCCEEEEECCCCCCCHHH
NLWAEARDRGFLVTDESGAPYALDQGEFEASLVDLTDPAARSWFAEVIARYVLADGVRGF
HHHHHHCCCCEEEECCCCCCEEECCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
MADFAEGLPFDARLHTGTPATLHNRWPALWARTVRLACRRAEQPRCVTWFRSGALGQAAH
HHHHHHCCCCCCEEECCCCCHHHCCCHHHHHHHHHHHHHHCCCCCEEEHHHCCCCCCHHC
APLFWNGDQLVTFGREDGLASALLGTLSAGVSGWPLVHSDVGGYTSVNAVVKNYVRTPEL
CCEEECCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHCCCHHH
LARWAEFQAFGVVLRTHEGNRPADNPQVFSTRDTARAFARSTRIFGALAPYRDRVVRAAT
HHHHHHHHEEEEEEEECCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
RTGVPAVRPIWLVAPGSSAAASDTEFFLGRHVLVAPVLEAGATSVPVILPPGRWVHLFTG
HCCCCCCCEEEEEECCCCCCCCCCHHHHCCHHHHHHHHHCCCCCCCEEECCCCEEEEEEC
RGYAGDRTVTVPAPIGRPAAFVREGGPWSTRLPARFRAAGLTALGSGA
CCCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8346018; 9278503 [H]