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The map label for this gene is rpoZ

Identifier: 119716664

GI number: 119716664

Start: 2598474

End: 2598806

Strand: Direct

Name: rpoZ

Synonym: Noca_2437

Alternate gene names: 119716664

Gene position: 2598474-2598806 (Clockwise)

Preceding gene: 119716663

Following gene: 119716665

Centisome position: 52.12

GC content: 68.77

Gene sequence:

>333_bases
GTGTCCGGACCCACCATCGCCGCCGAGGGTGTCACCAACCCCCCGATTGACGAGCTGCTGACGAAGACCGACAGCAAGTA
CAAGCTGGTCCTCTACAGCGCCAAGCGCGCCCGGCAGATCAACGCCTACTACTCCCAGCTCGGGGAGGGCCTGCTCGAGT
ACGTCGGCCCGCTGGTCGACACCCACGTCCAGGAGAAGCCGCTCTCGATCGCGCTGCGCGAGATCAACGAAGACCTGCTG
ACCTGCGAGGACGTCGACCCCGCCGAGCTCGCCGCCGAGGAGGCCGCCGCGCAGGCCGCCGCCGCGGATGCGGGCAGCTC
GTTCAGCGAGTGA

Upstream 100 bases:

>100_bases
GGAGTTCGACCTGACGATCGTCAACCACGAAGTTAACGCTGCCGCGGAGGAGTTGGTAGCCTTGATGGCGCCATCCCCGA
CAGATCTGTGAGGCTTTAGC

Downstream 100 bases:

>100_bases
TCCGCTGACCACCAGCAGCACCCACGAGGCCGCCTCCCCGTCAGGGGGGCGGCCCGCTGCTCGTCCCGAGCAGGCTCCGC
GGGTGGTGCTCGGGGTCTCC

Product: DNA-directed RNA polymerase subunit omega

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega

Number of amino acids: Translated: 110; Mature: 109

Protein sequence:

>110_residues
MSGPTIAAEGVTNPPIDELLTKTDSKYKLVLYSAKRARQINAYYSQLGEGLLEYVGPLVDTHVQEKPLSIALREINEDLL
TCEDVDPAELAAEEAAAQAAAADAGSSFSE

Sequences:

>Translated_110_residues
MSGPTIAAEGVTNPPIDELLTKTDSKYKLVLYSAKRARQINAYYSQLGEGLLEYVGPLVDTHVQEKPLSIALREINEDLL
TCEDVDPAELAAEEAAAQAAAADAGSSFSE
>Mature_109_residues
SGPTIAAEGVTNPPIDELLTKTDSKYKLVLYSAKRARQINAYYSQLGEGLLEYVGPLVDTHVQEKPLSIALREINEDLLT
CEDVDPAELAAEEAAAQAAAADAGSSFSE

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOZ_NOCSJ (A1SJF7)

Other databases:

- EMBL:   CP000509
- RefSeq:   YP_923629.1
- STRING:   A1SJF7
- GeneID:   4598273
- GenomeReviews:   CP000509_GR
- KEGG:   nca:Noca_2437
- eggNOG:   COG1758
- HOGENOM:   HBG742204
- OMA:   VIFAAKR
- ProtClustDB:   CLSK2783564
- BioCyc:   NSP35761:NOCA_2437-MONOMER
- HAMAP:   MF_00366
- InterPro:   IPR003716
- InterPro:   IPR006110
- InterPro:   IPR012293
- Gene3D:   G3DSA:3.90.940.10
- TIGRFAMs:   TIGR00690

Pfam domain/function: PF01192 RNA_pol_Rpb6; SSF63562 RNA_pol_omega

EC number: =2.7.7.6

Molecular weight: Translated: 11740; Mature: 11609

Theoretical pI: Translated: 4.01; Mature: 4.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGPTIAAEGVTNPPIDELLTKTDSKYKLVLYSAKRARQINAYYSQLGEGLLEYVGPLVD
CCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHH
THVQEKPLSIALREINEDLLTCEDVDPAELAAEEAAAQAAAADAGSSFSE
HHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
SGPTIAAEGVTNPPIDELLTKTDSKYKLVLYSAKRARQINAYYSQLGEGLLEYVGPLVD
CCCCCCCCCCCCCCHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHH
THVQEKPLSIALREINEDLLTCEDVDPAELAAEEAAAQAAAADAGSSFSE
HHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA