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The map label for this gene is pdxS [H]

Identifier: 119716608

GI number: 119716608

Start: 2537088

End: 2538017

Strand: Direct

Name: pdxS [H]

Synonym: Noca_2381

Alternate gene names: 119716608

Gene position: 2537088-2538017 (Clockwise)

Preceding gene: 119716607

Following gene: 119716609

Centisome position: 50.89

GC content: 70.54

Gene sequence:

>930_bases
ATGGTCGACAGCCCCACCCCTGACAGCACCGCCAGCACCCCCACCACCGGCACCACCGGCACCACCCGCGTCAAGCGCGG
CATGGCCGAGATGCTCAAGGGGGGCGTGATCATGGACGTGGTCACGCCGGAGCAGGCGAAGATCGCCGAGGACGCCGGAG
CGGTGGCCGTGATGGCGCTCGAGCGGGTCCCGGCCGACATCCGGGCGCAGGGCGGGGTGTCGCGGATGAGCGACCCCGAC
ATGATCGACGGGATCATCGAGGCGGTCTCGATCCCGGTGATGGCCAAGGCCCGGATCGGGCACTTCGCCGAGGCGCAGGT
GCTGCAGTCGCTCGGCGTCGACTACGTCGACGAGTCCGAGGTGCTCACGCCCGCCGACTACGCCAACCACATCGACAAGT
GGGCCTTCACCGTGCCGTTCGTGTGCGGTGCCACCAACCTGGGCGAGGCGCTGCGGCGGATCACCGAGGGCGCGGCGATG
ATCCGCTCCAAGGGCGAGGCCGGCACCGGCGACGTGTCCAACGCCGTGACCCACATGCGCACGATCCGACGCGAGATCCG
GCGGCTGGGTGCCCTCGAGTCCGACGAGCTCTACGTGGCCGCCAAGGAGCTGCAGGCGCCGTACGACCTGGTCAAGGAGG
TCGCCGAGCGCGGCAAGCTGCCCGTCGTGCTGTTCACCGCGGGCGGGATCGCCACCCCGGCGGACGCGGCGATGATGATG
CAGCTCGGCGCTGAGGGCGTCTTCGTCGGCTCGGGCATCTTCAAATCCGGCAACCCCGCCCAGCGTGCCGAGGCGATCGT
GAAGGCCACCACCTTCCACGACGACCCCGACGTGGTCGCGAAGGTCTCCCGCGGTCTCGGTGAGGCCATGGTCGGCATCA
ACGTCGAGGAGCTTCCCCAGCCGCACCGGCTCGCCGAGCGCGGCTGGTGA

Upstream 100 bases:

>100_bases
GCTCTGGGCGCTGGCGATCGCCTCCACGATCACGGTCGGGCAGCGCGTCTGGGTGGTCCGGAAGCAAGCGATCGCCGAGG
CCCGCACTAGAATCTGAGGC

Downstream 100 bases:

>100_bases
CGACCGCCCCCACGATCGGTGTCTTCGCCCTCCAGGGCGACGTCCGCGAGCACCTCGGGATGCTCACCGGCCTCGGTGTC
GAGGCGATCGCCGTACGCCG

Product: pyridoxal biosynthesis lyase PdxS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 309; Mature: 309

Protein sequence:

>309_residues
MVDSPTPDSTASTPTTGTTGTTRVKRGMAEMLKGGVIMDVVTPEQAKIAEDAGAVAVMALERVPADIRAQGGVSRMSDPD
MIDGIIEAVSIPVMAKARIGHFAEAQVLQSLGVDYVDESEVLTPADYANHIDKWAFTVPFVCGATNLGEALRRITEGAAM
IRSKGEAGTGDVSNAVTHMRTIRREIRRLGALESDELYVAAKELQAPYDLVKEVAERGKLPVVLFTAGGIATPADAAMMM
QLGAEGVFVGSGIFKSGNPAQRAEAIVKATTFHDDPDVVAKVSRGLGEAMVGINVEELPQPHRLAERGW

Sequences:

>Translated_309_residues
MVDSPTPDSTASTPTTGTTGTTRVKRGMAEMLKGGVIMDVVTPEQAKIAEDAGAVAVMALERVPADIRAQGGVSRMSDPD
MIDGIIEAVSIPVMAKARIGHFAEAQVLQSLGVDYVDESEVLTPADYANHIDKWAFTVPFVCGATNLGEALRRITEGAAM
IRSKGEAGTGDVSNAVTHMRTIRREIRRLGALESDELYVAAKELQAPYDLVKEVAERGKLPVVLFTAGGIATPADAAMMM
QLGAEGVFVGSGIFKSGNPAQRAEAIVKATTFHDDPDVVAKVSRGLGEAMVGINVEELPQPHRLAERGW
>Mature_309_residues
MVDSPTPDSTASTPTTGTTGTTRVKRGMAEMLKGGVIMDVVTPEQAKIAEDAGAVAVMALERVPADIRAQGGVSRMSDPD
MIDGIIEAVSIPVMAKARIGHFAEAQVLQSLGVDYVDESEVLTPADYANHIDKWAFTVPFVCGATNLGEALRRITEGAAM
IRSKGEAGTGDVSNAVTHMRTIRREIRRLGALESDELYVAAKELQAPYDLVKEVAERGKLPVVLFTAGGIATPADAAMMM
QLGAEGVFVGSGIFKSGNPAQRAEAIVKATTFHDDPDVVAKVSRGLGEAMVGINVEELPQPHRLAERGW

Specific function: Involved in the production of pyridoxal phosphate, probably by incorporating ammonia into the pyridine ring [H]

COG id: COG0214

COG function: function code H; Pyridoxine biosynthesis enzyme

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the pdxS/SNZ family [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6323743, Length=291, Percent_Identity=62.8865979381443, Blast_Score=370, Evalue=1e-103,
Organism=Saccharomyces cerevisiae, GI6321049, Length=294, Percent_Identity=63.6054421768708, Blast_Score=361, Evalue=1e-101,
Organism=Saccharomyces cerevisiae, GI6323996, Length=294, Percent_Identity=63.265306122449, Blast_Score=361, Evalue=1e-100,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011060
- InterPro:   IPR001852 [H]

Pfam domain/function: PF01680 SOR_SNZ [H]

EC number: NA

Molecular weight: Translated: 32683; Mature: 32683

Theoretical pI: Translated: 4.79; Mature: 4.79

Prosite motif: PS01235 PDXS_SNZ_1 ; PS51129 PDXS_SNZ_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVDSPTPDSTASTPTTGTTGTTRVKRGMAEMLKGGVIMDVVTPEQAKIAEDAGAVAVMAL
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHCCHHHHHHH
ERVPADIRAQGGVSRMSDPDMIDGIIEAVSIPVMAKARIGHFAEAQVLQSLGVDYVDESE
HHCCHHHHHCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHCCCCCCCCCC
VLTPADYANHIDKWAFTVPFVCGATNLGEALRRITEGAAMIRSKGEAGTGDVSNAVTHMR
CCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
TIRREIRRLGALESDELYVAAKELQAPYDLVKEVAERGKLPVVLFTAGGIATPADAAMMM
HHHHHHHHHCCCCCCCCEEEHHHHCCHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHH
QLGAEGVFVGSGIFKSGNPAQRAEAIVKATTFHDDPDVVAKVSRGLGEAMVGINVEELPQ
HHCCCCEEECCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHCCC
PHRLAERGW
HHHHHHCCC
>Mature Secondary Structure
MVDSPTPDSTASTPTTGTTGTTRVKRGMAEMLKGGVIMDVVTPEQAKIAEDAGAVAVMAL
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHCCHHHHHHH
ERVPADIRAQGGVSRMSDPDMIDGIIEAVSIPVMAKARIGHFAEAQVLQSLGVDYVDESE
HHCCHHHHHCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHCCCCCCCCCC
VLTPADYANHIDKWAFTVPFVCGATNLGEALRRITEGAAMIRSKGEAGTGDVSNAVTHMR
CCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
TIRREIRRLGALESDELYVAAKELQAPYDLVKEVAERGKLPVVLFTAGGIATPADAAMMM
HHHHHHHHHCCCCCCCCEEEHHHHCCHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHH
QLGAEGVFVGSGIFKSGNPAQRAEAIVKATTFHDDPDVVAKVSRGLGEAMVGINVEELPQ
HHCCCCEEECCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHCCC
PHRLAERGW
HHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA