| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is 119716470
Identifier: 119716470
GI number: 119716470
Start: 2390875
End: 2392413
Strand: Direct
Name: 119716470
Synonym: Noca_2243
Alternate gene names: NA
Gene position: 2390875-2392413 (Clockwise)
Preceding gene: 119716469
Following gene: 119716471
Centisome position: 47.95
GC content: 70.5
Gene sequence:
>1539_bases ATGACCACCACCCCCCGCCGGAACCGCCGCGGCGGCCGCGACATGGCCGCCCTGCTCTCCGACTTCGGGCACGACCTGCC CACGATCCCCACGCTCGCCCCGGAGGCCAAGGAGCCCCGGCTCTTCCGCTACGCGCCGCGCCGCGGTGCCACCCGCCGCG GCCGAGGCTGGGCCGCCGCCACCGCCCCGGCGATGGCCTGGCGGATGACCAGCGACCAGGCCCCGGTGTTCTGGCCCTTC GTCTCCGCTCCCGCCCTGCCCCCGACGGGCGCCCAGATGGGCGTCGACCAGCTCTCCGGCGGCAGCTTCTACTGCGACCC GTTCGGGTGGGTGCTGCGCGACGACGTACCCGCGACCAACCCCAACATCTTCCAGTTCGCCAAGCCGGGAAGTGGCAAGT CCGGCACCACCAAGGCGTTCTGCACCCGGATGATGCCGTTCGGCTACCGCACCCTGGTCACTGGCGACGTCAAGGACGAG TACGAGTCGCTGTGCCGCGCGCTCGGTGTCGACCCCTTCGTCATCGCCCCCGGCTTCTGGGCCCGGGTCAACCCGCTGTC CATGGGGCCGCTCGGCGACGGCTGGGAGAAGCTCTCGGCCGAGGAGGCGCAGCGCCGCGCCACGATCATCTTCAAGCGGT GGCTCGTCCTGGTCCGCGGCCTGGTCGGCAGCATGAAGATCGACGATGAGCGCCGGGTGCCCTTCGGCCCCGACGAATCC GACGTCGTGCGCAACGCGCTGGCGATCCTCACCGGCTACGCCGCCGGCAACAGCGTCCTGCAAGAGACGACCATCCCGCG GCTGTGGGACCTGCTGCGCAACCCCACGGAGGAGCTCGTCCGTGCCTGCGAATACGCGAACACCCGCCAGTTCCTCGACG AGACCCGGCGGCTGCGCAACGCGCTCGGCGAGCTGGTCACCGGCACCCTCGCCGGCCTCTTCGACGACTTCACCAACATC GAGGTCGACTGGCGGGCCCCGATCCAGTCGTTCAGCCTCTCCCGGCTCGACGGCCTGGGCGATGAGGCCGTGGGCATCGC GCTGCTGTGCATGAACTCCTGGGGGCGTGGTCTGCGGGAGATCGCCGAGCCAGGCGACCTGCGCATCGTGGTGCGCGACG AGGTCTGGAAGCAGATGCGCCTCGGAACCGCCGCAGTAGCGAGCTTCGACGCCGACCTGCGGCTCTCACGCGGCATGGCC GGCAAGGGCGGCGACATCCAGTTCTGCAACCTCCACAAGCCCTCCGACCTGCTCTCGGTCGGCGACGCCGACTCCCAGGC CGCGATGATCGCCAAGGACCTCCTCGAGCTGGCCGACATCAAGATCCTCGGTGCCCAGAAGCCCCGTGTCGCCCGCGAGC TCGACTCCATGCTCGGGCTCGGCCCGATCGCCCAGGACCTCGTCTCCGGGTGGGCCATGCAGGACAAGGGCCGCGCCCTG TGGTGCATCGGCGACGCCACCTACAAGGTCCAGACGGTGCTCCACCCGCTGGAGAAGAAGCTCTACTACACCAACGAGGC CATCGAGTCCGCCGCCTGA
Upstream 100 bases:
>100_bases CCGGGTTCGCACCGCTGCGCCTCGACCTCGCCCAGGACGTCGGGTTCGCCGCGTCCACCATCCCCCTCGGCTCGAGCCTG ACCCGGAGCGGAGACGCCTG
Downstream 100 bases:
>100_bases GCGCGCGCGACCTCGGGACTGACCTGTCATGAAGAAGCTGCTGCTCGCGGGACTGCCCGTCCTGATCATCTTCATGGGGC TGCCGTTCCTCGTGACGCTG
Product: ATP-binding protein
Products: NA
Alternate protein names: ATPase; Type IV Secretory Pathway VirB4 Components-Like Protein; Type IV Secretory Pathway VirB4 Component-Like Protein
Number of amino acids: Translated: 512; Mature: 511
Protein sequence:
>512_residues MTTTPRRNRRGGRDMAALLSDFGHDLPTIPTLAPEAKEPRLFRYAPRRGATRRGRGWAAATAPAMAWRMTSDQAPVFWPF VSAPALPPTGAQMGVDQLSGGSFYCDPFGWVLRDDVPATNPNIFQFAKPGSGKSGTTKAFCTRMMPFGYRTLVTGDVKDE YESLCRALGVDPFVIAPGFWARVNPLSMGPLGDGWEKLSAEEAQRRATIIFKRWLVLVRGLVGSMKIDDERRVPFGPDES DVVRNALAILTGYAAGNSVLQETTIPRLWDLLRNPTEELVRACEYANTRQFLDETRRLRNALGELVTGTLAGLFDDFTNI EVDWRAPIQSFSLSRLDGLGDEAVGIALLCMNSWGRGLREIAEPGDLRIVVRDEVWKQMRLGTAAVASFDADLRLSRGMA GKGGDIQFCNLHKPSDLLSVGDADSQAAMIAKDLLELADIKILGAQKPRVARELDSMLGLGPIAQDLVSGWAMQDKGRAL WCIGDATYKVQTVLHPLEKKLYYTNEAIESAA
Sequences:
>Translated_512_residues MTTTPRRNRRGGRDMAALLSDFGHDLPTIPTLAPEAKEPRLFRYAPRRGATRRGRGWAAATAPAMAWRMTSDQAPVFWPF VSAPALPPTGAQMGVDQLSGGSFYCDPFGWVLRDDVPATNPNIFQFAKPGSGKSGTTKAFCTRMMPFGYRTLVTGDVKDE YESLCRALGVDPFVIAPGFWARVNPLSMGPLGDGWEKLSAEEAQRRATIIFKRWLVLVRGLVGSMKIDDERRVPFGPDES DVVRNALAILTGYAAGNSVLQETTIPRLWDLLRNPTEELVRACEYANTRQFLDETRRLRNALGELVTGTLAGLFDDFTNI EVDWRAPIQSFSLSRLDGLGDEAVGIALLCMNSWGRGLREIAEPGDLRIVVRDEVWKQMRLGTAAVASFDADLRLSRGMA GKGGDIQFCNLHKPSDLLSVGDADSQAAMIAKDLLELADIKILGAQKPRVARELDSMLGLGPIAQDLVSGWAMQDKGRAL WCIGDATYKVQTVLHPLEKKLYYTNEAIESAA >Mature_511_residues TTTPRRNRRGGRDMAALLSDFGHDLPTIPTLAPEAKEPRLFRYAPRRGATRRGRGWAAATAPAMAWRMTSDQAPVFWPFV SAPALPPTGAQMGVDQLSGGSFYCDPFGWVLRDDVPATNPNIFQFAKPGSGKSGTTKAFCTRMMPFGYRTLVTGDVKDEY ESLCRALGVDPFVIAPGFWARVNPLSMGPLGDGWEKLSAEEAQRRATIIFKRWLVLVRGLVGSMKIDDERRVPFGPDESD VVRNALAILTGYAAGNSVLQETTIPRLWDLLRNPTEELVRACEYANTRQFLDETRRLRNALGELVTGTLAGLFDDFTNIE VDWRAPIQSFSLSRLDGLGDEAVGIALLCMNSWGRGLREIAEPGDLRIVVRDEVWKQMRLGTAAVASFDADLRLSRGMAG KGGDIQFCNLHKPSDLLSVGDADSQAAMIAKDLLELADIKILGAQKPRVARELDSMLGLGPIAQDLVSGWAMQDKGRALW CIGDATYKVQTVLHPLEKKLYYTNEAIESAA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 56266; Mature: 56135
Theoretical pI: Translated: 7.28; Mature: 7.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTTPRRNRRGGRDMAALLSDFGHDLPTIPTLAPEAKEPRLFRYAPRRGATRRGRGWAAA CCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHH TAPAMAWRMTSDQAPVFWPFVSAPALPPTGAQMGVDQLSGGSFYCDPFGWVLRDDVPATN CCCHHEEEECCCCCCEEEEECCCCCCCCCCCHHCHHHCCCCCEEECCCCCCEECCCCCCC PNIFQFAKPGSGKSGTTKAFCTRMMPFGYRTLVTGDVKDEYESLCRALGVDPFVIAPGFW CCEEEEECCCCCCCCCHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHCCCCEEECCCCC ARVNPLSMGPLGDGWEKLSAEEAQRRATIIFKRWLVLVRGLVGSMKIDDERRVPFGPDES EECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCHH DVVRNALAILTGYAAGNSVLQETTIPRLWDLLRNPTEELVRACEYANTRQFLDETRRLRN HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCHHHHHHHHHHHHHH ALGELVTGTLAGLFDDFTNIEVDWRAPIQSFSLSRLDGLGDEAVGIALLCMNSWGRGLRE HHHHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH IAEPGDLRIVVRDEVWKQMRLGTAAVASFDADLRLSRGMAGKGGDIQFCNLHKPSDLLSV HCCCCCEEEEEHHHHHHHHHCCHHHHHHCCCCHHHHCCCCCCCCCEEEEECCCCHHHHCC GDADSQAAMIAKDLLELADIKILGAQKPRVARELDSMLGLGPIAQDLVSGWAMQDKGRAL CCCCHHHHHHHHHHHHHHCEEEECCCCCHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCEE WCIGDATYKVQTVLHPLEKKLYYTNEAIESAA EEECCCCHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure TTTPRRNRRGGRDMAALLSDFGHDLPTIPTLAPEAKEPRLFRYAPRRGATRRGRGWAAA CCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHH TAPAMAWRMTSDQAPVFWPFVSAPALPPTGAQMGVDQLSGGSFYCDPFGWVLRDDVPATN CCCHHEEEECCCCCCEEEEECCCCCCCCCCCHHCHHHCCCCCEEECCCCCCEECCCCCCC PNIFQFAKPGSGKSGTTKAFCTRMMPFGYRTLVTGDVKDEYESLCRALGVDPFVIAPGFW CCEEEEECCCCCCCCCHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHCCCCEEECCCCC ARVNPLSMGPLGDGWEKLSAEEAQRRATIIFKRWLVLVRGLVGSMKIDDERRVPFGPDES EECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCHH DVVRNALAILTGYAAGNSVLQETTIPRLWDLLRNPTEELVRACEYANTRQFLDETRRLRN HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCHHHHHHHHHHHHHH ALGELVTGTLAGLFDDFTNIEVDWRAPIQSFSLSRLDGLGDEAVGIALLCMNSWGRGLRE HHHHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH IAEPGDLRIVVRDEVWKQMRLGTAAVASFDADLRLSRGMAGKGGDIQFCNLHKPSDLLSV HCCCCCEEEEEHHHHHHHHHCCHHHHHHCCCCHHHHCCCCCCCCCEEEEECCCCHHHHCC GDADSQAAMIAKDLLELADIKILGAQKPRVARELDSMLGLGPIAQDLVSGWAMQDKGRAL CCCCHHHHHHHHHHHHHHCEEEECCCCCHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCEE WCIGDATYKVQTVLHPLEKKLYYTNEAIESAA EEECCCCHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA