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The map label for this gene is ltrA [H]

Identifier: 119716383

GI number: 119716383

Start: 2301294

End: 2302250

Strand: Reverse

Name: ltrA [H]

Synonym: Noca_2152

Alternate gene names: 119716383

Gene position: 2302250-2301294 (Counterclockwise)

Preceding gene: 119716386

Following gene: 119716382

Centisome position: 46.18

GC content: 61.86

Gene sequence:

>957_bases
ATGAATCCGCTCGAGGACCTCCAGTACTTTCTTGCGCTGGCGCGCAACGGCAGTCTGTCAGCCGCGGGGACGGATCTCCA
GGTCAGCCACACCACCGTCAGCCGGCACGTCAGGACCCTGGAAAAGTATGTTGGCTACAGGCTCTTCGACAAGGGACCGG
CTGGCTGGAACCTCACCGACGAAGGTCTCCGACTGTTGGAGCGCGCTGAGCGGATTGAACACGAGGCGCTTGCCGCGTTC
GCCGGACGTGACAACACGGCTGGGACAGTGCGCGTCGCAACTACCGAAGGATTCGGAACACACATTCTCGCGCCACTATC
GGCGCAGATTCGCCGAGCCGACCCGTCCATCGAGATCGAACTGATGATGACGAGTCGCACACCGTCGGTTTCAGCCAGAG
ACTTCGACATCGCGATCACCCTTCAGCCTCCGATGAACCCGAACATCGACACCGTAAGACTCACTCCCTATCGGCTCGGG
CTGTTCGCCAGCATCCCTTACCTCGATCGTCACGGAACTCCCCCCGACCTGGATTCCCTGCGTGCCCACGATTTCGTCTG
GTACGTCCAGTCGCTCCTCGACATGTCAGAGCTCGACTTTCGCGAGCTGGGCATACCCGACGAACAGAAGGTCGTCAGGT
GCACGACCTCGCTCGGACAGCTCGCGGCAGTCCGAGCGGGCGCAGGAGTCGGTGTACTTCCCCTGTTCATGGTGGGGCAA
GCCGGTGACCTTCGCCCCGTCCTCAGTGCCAGCGTGATGGTCGAGCGAACCTACTGGCTCGTCACATCGCCACATTCGAG
CCGGAGAGCGAATGTCCGAGTTGTCGCCTCGGCCATCGTCCACCACGTGTCCGCCTCGAACAAGAGATTCCTCACCTGCG
ACGTCGCCCCCTCCCGACCAACGGCTGAACGGGCAAGCTCGCCACCACTTCGCCATCCGTTTCGACTATCGGAATGA

Upstream 100 bases:

>100_bases
GGTCAGGGCCCGGCCATGCCTTCTGATGGCATCGGACAGGCATCCACGGCTGAGATGAACTTGATCTTGGCTAGATGCCG
ACGCGATACGGAGGATGGGA

Downstream 100 bases:

>100_bases
TGCGATGGCGCCGCCCGCCCCCACGTCACACAGTGGTCACGCTCACATGACGAGAGGTGACCATGAACCAACCAAGCGCG
GCTCAAGCCACATCAGCGAT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 318; Mature: 318

Protein sequence:

>318_residues
MNPLEDLQYFLALARNGSLSAAGTDLQVSHTTVSRHVRTLEKYVGYRLFDKGPAGWNLTDEGLRLLERAERIEHEALAAF
AGRDNTAGTVRVATTEGFGTHILAPLSAQIRRADPSIEIELMMTSRTPSVSARDFDIAITLQPPMNPNIDTVRLTPYRLG
LFASIPYLDRHGTPPDLDSLRAHDFVWYVQSLLDMSELDFRELGIPDEQKVVRCTTSLGQLAAVRAGAGVGVLPLFMVGQ
AGDLRPVLSASVMVERTYWLVTSPHSSRRANVRVVASAIVHHVSASNKRFLTCDVAPSRPTAERASSPPLRHPFRLSE

Sequences:

>Translated_318_residues
MNPLEDLQYFLALARNGSLSAAGTDLQVSHTTVSRHVRTLEKYVGYRLFDKGPAGWNLTDEGLRLLERAERIEHEALAAF
AGRDNTAGTVRVATTEGFGTHILAPLSAQIRRADPSIEIELMMTSRTPSVSARDFDIAITLQPPMNPNIDTVRLTPYRLG
LFASIPYLDRHGTPPDLDSLRAHDFVWYVQSLLDMSELDFRELGIPDEQKVVRCTTSLGQLAAVRAGAGVGVLPLFMVGQ
AGDLRPVLSASVMVERTYWLVTSPHSSRRANVRVVASAIVHHVSASNKRFLTCDVAPSRPTAERASSPPLRHPFRLSE
>Mature_318_residues
MNPLEDLQYFLALARNGSLSAAGTDLQVSHTTVSRHVRTLEKYVGYRLFDKGPAGWNLTDEGLRLLERAERIEHEALAAF
AGRDNTAGTVRVATTEGFGTHILAPLSAQIRRADPSIEIELMMTSRTPSVSARDFDIAITLQPPMNPNIDTVRLTPYRLG
LFASIPYLDRHGTPPDLDSLRAHDFVWYVQSLLDMSELDFRELGIPDEQKVVRCTTSLGQLAAVRAGAGVGVLPLFMVGQ
AGDLRPVLSASVMVERTYWLVTSPHSSRRANVRVVASAIVHHVSASNKRFLTCDVAPSRPTAERASSPPLRHPFRLSE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789440, Length=279, Percent_Identity=24.7311827956989, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1786401, Length=190, Percent_Identity=26.3157894736842, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI157672245, Length=275, Percent_Identity=25.8181818181818, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1787128, Length=241, Percent_Identity=26.9709543568465, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1789639, Length=196, Percent_Identity=25.5102040816327, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI87081978, Length=184, Percent_Identity=28.2608695652174, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1786448, Length=179, Percent_Identity=27.9329608938547, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35003; Mature: 35003

Theoretical pI: Translated: 7.79; Mature: 7.79

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPLEDLQYFLALARNGSLSAAGTDLQVSHTTVSRHVRTLEKYVGYRLFDKGPAGWNLTD
CCHHHHHHHHHHHHCCCCCEECCCCEEEEHHHHHHHHHHHHHHHCEEEECCCCCCCCCCH
EGLRLLERAERIEHEALAAFAGRDNTAGTVRVATTEGFGTHILAPLSAQIRRADPSIEIE
HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCEEECCHHHHHHCCCCCEEEE
LMMTSRTPSVSARDFDIAITLQPPMNPNIDTVRLTPYRLGLFASIPYLDRHGTPPDLDSL
EEEECCCCCCCCCCEEEEEEECCCCCCCCCEEEECCEEEEHEEECCCHHCCCCCCCHHHH
RAHDFVWYVQSLLDMSELDFRELGIPDEQKVVRCTTSLGQLAAVRAGAGVGVLPLFMVGQ
HHHHHHHHHHHHHHHHHCCHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCC
AGDLRPVLSASVMVERTYWLVTSPHSSRRANVRVVASAIVHHVSASNKRFLTCDVAPSRP
CCCCCHHHHHHEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCC
TAERASSPPLRHPFRLSE
CHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MNPLEDLQYFLALARNGSLSAAGTDLQVSHTTVSRHVRTLEKYVGYRLFDKGPAGWNLTD
CCHHHHHHHHHHHHCCCCCEECCCCEEEEHHHHHHHHHHHHHHHCEEEECCCCCCCCCCH
EGLRLLERAERIEHEALAAFAGRDNTAGTVRVATTEGFGTHILAPLSAQIRRADPSIEIE
HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCEEECCHHHHHHCCCCCEEEE
LMMTSRTPSVSARDFDIAITLQPPMNPNIDTVRLTPYRLGLFASIPYLDRHGTPPDLDSL
EEEECCCCCCCCCCEEEEEEECCCCCCCCCEEEECCEEEEHEEECCCHHCCCCCCCHHHH
RAHDFVWYVQSLLDMSELDFRELGIPDEQKVVRCTTSLGQLAAVRAGAGVGVLPLFMVGQ
HHHHHHHHHHHHHHHHHCCHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCC
AGDLRPVLSASVMVERTYWLVTSPHSSRRANVRVVASAIVHHVSASNKRFLTCDVAPSRP
CCCCCHHHHHHEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCC
TAERASSPPLRHPFRLSE
CHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8748036 [H]