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The map label for this gene is ydcU [H]

Identifier: 119716300

GI number: 119716300

Start: 2214411

End: 2215292

Strand: Direct

Name: ydcU [H]

Synonym: Noca_2069

Alternate gene names: 119716300

Gene position: 2214411-2215292 (Clockwise)

Preceding gene: 119716299

Following gene: 119716301

Centisome position: 44.41

GC content: 72.56

Gene sequence:

>882_bases
GTGAGCTCCCAGGTCGGCAGGACCGCCCTGGCGATCCGGCTCCTTCCGGCGCTCGCGGTCATCACGGTCTTCCTCGGCGC
GGGCATGTGGTTCGCCGTCGCCCAGAGCCTGGGCTACCAGCCCTACCTGCCGACGGTCCGCGGCGAGGGGCTGACGCTCG
CGGCGTACGTCGACCTCCTCCACGACCCGGCCGTGGGGCCCGCCATCGCGCTGACCTTGCGGGTGGCCGTCGCCTCGACG
TTCACGGCAGCCGTCCTGGGCACCGGTCTGGCCCTGCTGATCTACCGCCTGGGGCGGGGCCGGGTCTGGGCGGCCCGGCT
GGTGCAGGTCAACCTCGCGACCCCTCACGTCGTCGGCGCACTGGCCATGCTGCTGCTGCTGTCTCAGACCGGGCTGGTGT
CGCGCCTGTCCCACTCCGTGGGGATCGTCGGTTCGCCGGCGGGCTTTCCCGAGCTCACGTCCGATCGGCTGGGCCTCGGG
ATCGCCCTCGAATACGTCTGGAAGGAGACCCCGTTCATCTCCCTGCTGGTGCTGGCCGCCCTGGGCCGGGCGTCGGACGA
GCTCGGCCGCGCCGCACGGGTGCTCGGCGCGCGACGCTGGCAGCGATTCCGGCACGTCACCCTCCCCGTGATCGCGCCCT
CGCTGATGGCGGGCACGGTGCTGGTGTTCGCGTTCGCCGCCGGCTCCTACGAGGTGCCGCGTCTGCTCGGCCGCCCCTAC
CCGGCCACCGTCTCGGCGCTCGCCTACGAGTACTACACCGACGCCGACCTGGCCGCGCGTCCGCAAGCCATGGCGCTTGC
CATGGTCGCGACGGTGATCAGCGTGGCGGGTGCGGCGGGGTACGTCTTGCTGTTCACCCGCCTCGTGCGGAGACCACTGT
GA

Upstream 100 bases:

>100_bases
TGCTGCCGCTGGACGAGCTGAGCGCCCGCGGGCAGCCCGAGCTGGCCAGCGACTACGTCACCAGGCTGGAGCGGGACTGG
AAGACCGAGGTGCTGCAGAG

Downstream 100 bases:

>100_bases
CCACCGCCTCGCCATGGCGGGGTCGCGTCTGGGTGCTGGGAGCGGTCGTGCTGCTCTGGGCGCCCTTCCTCCCGCTGCTG
CTCCGGGCCGTCGCCGCGAA

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 293; Mature: 292

Protein sequence:

>293_residues
MSSQVGRTALAIRLLPALAVITVFLGAGMWFAVAQSLGYQPYLPTVRGEGLTLAAYVDLLHDPAVGPAIALTLRVAVAST
FTAAVLGTGLALLIYRLGRGRVWAARLVQVNLATPHVVGALAMLLLLSQTGLVSRLSHSVGIVGSPAGFPELTSDRLGLG
IALEYVWKETPFISLLVLAALGRASDELGRAARVLGARRWQRFRHVTLPVIAPSLMAGTVLVFAFAAGSYEVPRLLGRPY
PATVSALAYEYYTDADLAARPQAMALAMVATVISVAGAAGYVLLFTRLVRRPL

Sequences:

>Translated_293_residues
MSSQVGRTALAIRLLPALAVITVFLGAGMWFAVAQSLGYQPYLPTVRGEGLTLAAYVDLLHDPAVGPAIALTLRVAVAST
FTAAVLGTGLALLIYRLGRGRVWAARLVQVNLATPHVVGALAMLLLLSQTGLVSRLSHSVGIVGSPAGFPELTSDRLGLG
IALEYVWKETPFISLLVLAALGRASDELGRAARVLGARRWQRFRHVTLPVIAPSLMAGTVLVFAFAAGSYEVPRLLGRPY
PATVSALAYEYYTDADLAARPQAMALAMVATVISVAGAAGYVLLFTRLVRRPL
>Mature_292_residues
SSQVGRTALAIRLLPALAVITVFLGAGMWFAVAQSLGYQPYLPTVRGEGLTLAAYVDLLHDPAVGPAIALTLRVAVASTF
TAAVLGTGLALLIYRLGRGRVWAARLVQVNLATPHVVGALAMLLLLSQTGLVSRLSHSVGIVGSPAGFPELTSDRLGLGI
ALEYVWKETPFISLLVLAALGRASDELGRAARVLGARRWQRFRHVTLPVIAPSLMAGTVLVFAFAAGSYEVPRLLGRPYP
ATVSALAYEYYTDADLAARPQAMALAMVATVISVAGAAGYVLLFTRLVRRPL

Specific function: Probably part of the binding-protein-dependent transport system ydcSTUV; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1176

COG function: function code E; ABC-type spermidine/putrescine transport system, permease component I

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787713, Length=199, Percent_Identity=34.1708542713568, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1787080, Length=221, Percent_Identity=28.5067873303167, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 30942; Mature: 30811

Theoretical pI: Translated: 10.78; Mature: 10.78

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSQVGRTALAIRLLPALAVITVFLGAGMWFAVAQSLGYQPYLPTVRGEGLTLAAYVDLL
CCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCEEHHHHHHHH
HDPAVGPAIALTLRVAVASTFTAAVLGTGLALLIYRLGRGRVWAARLVQVNLATPHVVGA
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHEEEEECCCHHHHHH
LAMLLLLSQTGLVSRLSHSVGIVGSPAGFPELTSDRLGLGIALEYVWKETPFISLLVLAA
HHHHHHHHCCHHHHHHHHCCCCEECCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHH
LGRASDELGRAARVLGARRWQRFRHVTLPVIAPSLMAGTVLVFAFAAGSYEVPRLLGRPY
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCC
PATVSALAYEYYTDADLAARPQAMALAMVATVISVAGAAGYVLLFTRLVRRPL
CHHHHHHHHHHHCCCCHHCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SSQVGRTALAIRLLPALAVITVFLGAGMWFAVAQSLGYQPYLPTVRGEGLTLAAYVDLL
CCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCEEHHHHHHHH
HDPAVGPAIALTLRVAVASTFTAAVLGTGLALLIYRLGRGRVWAARLVQVNLATPHVVGA
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHEEEEECCCHHHHHH
LAMLLLLSQTGLVSRLSHSVGIVGSPAGFPELTSDRLGLGIALEYVWKETPFISLLVLAA
HHHHHHHHCCHHHHHHHHCCCCEECCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHH
LGRASDELGRAARVLGARRWQRFRHVTLPVIAPSLMAGTVLVFAFAAGSYEVPRLLGRPY
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCC
PATVSALAYEYYTDADLAARPQAMALAMVATVISVAGAAGYVLLFTRLVRRPL
CHHHHHHHHHHHCCCCHHCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]