Click here to switch to the map view.

The map label for this gene is cdaR [C]

Identifier: 119716223

GI number: 119716223

Start: 2128165

End: 2129376

Strand: Reverse

Name: cdaR [C]

Synonym: Noca_1991

Alternate gene names: 119716223

Gene position: 2129376-2128165 (Counterclockwise)

Preceding gene: 119716225

Following gene: 119716222

Centisome position: 42.71

GC content: 76.9

Gene sequence:

>1212_bases
GTGAATCCAGGGCAGGGCGCCGGCCCGCACCGCCGGGCCGCCGACGCGCTCCAGCGCGCGACCGGGGCGCTGAGCACCGC
CGCCATGGCCCGCATGGAGCAGGACATGCCATGGTTCCGCGACCTGAGCGCCGAGGACCGCTCCTGGGTCGGCATGATCG
TCCAGGCCGGTATCCGCGGCTTCGTCGACTGGTACCGCCAGGCCGTGGACCAGCCCGCGCCCGGCTCCACCGAGATGGTC
GCCTCCGTCTTCGGCGCCGCCCCGCGCGCCCTCGCGGGCGTGATCAACCTCCAGCAGACCGTCGACCTGGTGCGGCTCTC
GATCGAGGTCGTGGAGTCGAACGTCGAGCAGCTGCTCGACCCGGCCGACGCGGCCGACGTGCGGGCGGCGGTGCTCCGCT
ACGCCCGCGAGGTGGCCTTCGCGACCGCCGAGGTCTACGCGCGGGCCGCGGAGGTGCGCGGCGCCTGGGACGCCCGGCTG
GAGGCCCTGGTCGTCGACGCCGTGCTCCGTTCGGAGGCCGACGAGGCGCTGCTCTCCCGCGCCAGCGCCCTGGGCTGGGC
GGCCCGCGGGGACGTGGCGGTGGTCCTCGGCAGCGTGCCCGGTGCGCGCAGCGAGTCCGACACGTTCGACGAGGTACGCC
GGGTGGCCCGGGCGGCCGGGATGGACGCCCTGTGCGCGGTGCAGGGTGACCGGCTGGTCGTCCTGCTCGGCGGCGTCGGC
GAGCCGCGGGCGGCCGCCGAGGCGGTCAGCGACCTGTTCGGCGAGGGGCCCGTGGTCGTCGGCCCGGTCGCGGCCGACCT
CGCGCAGGCCCACGTCTCGGCCCGGGCGGCCCTGTCCGCCCACCGCGCCGCGCCCGGCTGGCCCGAGGCGCCGCGTCCGG
TGCGCAGCGCCGACCTGCTCCCCGAACGGGTGCTCGCCGGCGACGGCCACGCGCGCCGGCACCTGGTCGACGAGGTGTAC
CTGCCGTTGGTCCGGGCCCGCGGCACCCTGATCGAGACCATCGGCGCCTACTACCAGCACGGCTCCTCGATCGAGGCCAC
CGCGCGCGCCCTGTTCGTCCACCCGAACACGGTGCGCTACCGGCTGCGCCAGGTCGCCGAGCTCACCGGCCTCGCCCCCG
GCCGGGCGCGGGACGCCTTCACCCTGGAGATCGCCCTCGTGCTCGGCCGCCAGTCCGGCCGCAGCGCCCGCACACCTGAG
GCGTCTTTGTAG

Upstream 100 bases:

>100_bases
TAGGCCGCGATTCAACCACGCCGATCGCCGCCGCGGGAGCCGGATCGCCTTGATTTACCGGGGTTTTACGTCCGTCGGAG
CACTCCACTAGCCTCGGACG

Downstream 100 bases:

>100_bases
GAACCCCACAAAGGATCGCCGACCGATTGGTGCGGGCCGGAGGCCAGGTCGGCCCCAGCTTCCCGGCACAGTGGACGGGT
GCTCGTCATCGTCGCTCCCG

Product: CdaR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 403; Mature: 403

Protein sequence:

>403_residues
MNPGQGAGPHRRAADALQRATGALSTAAMARMEQDMPWFRDLSAEDRSWVGMIVQAGIRGFVDWYRQAVDQPAPGSTEMV
ASVFGAAPRALAGVINLQQTVDLVRLSIEVVESNVEQLLDPADAADVRAAVLRYAREVAFATAEVYARAAEVRGAWDARL
EALVVDAVLRSEADEALLSRASALGWAARGDVAVVLGSVPGARSESDTFDEVRRVARAAGMDALCAVQGDRLVVLLGGVG
EPRAAAEAVSDLFGEGPVVVGPVAADLAQAHVSARAALSAHRAAPGWPEAPRPVRSADLLPERVLAGDGHARRHLVDEVY
LPLVRARGTLIETIGAYYQHGSSIEATARALFVHPNTVRYRLRQVAELTGLAPGRARDAFTLEIALVLGRQSGRSARTPE
ASL

Sequences:

>Translated_403_residues
MNPGQGAGPHRRAADALQRATGALSTAAMARMEQDMPWFRDLSAEDRSWVGMIVQAGIRGFVDWYRQAVDQPAPGSTEMV
ASVFGAAPRALAGVINLQQTVDLVRLSIEVVESNVEQLLDPADAADVRAAVLRYAREVAFATAEVYARAAEVRGAWDARL
EALVVDAVLRSEADEALLSRASALGWAARGDVAVVLGSVPGARSESDTFDEVRRVARAAGMDALCAVQGDRLVVLLGGVG
EPRAAAEAVSDLFGEGPVVVGPVAADLAQAHVSARAALSAHRAAPGWPEAPRPVRSADLLPERVLAGDGHARRHLVDEVY
LPLVRARGTLIETIGAYYQHGSSIEATARALFVHPNTVRYRLRQVAELTGLAPGRARDAFTLEIALVLGRQSGRSARTPE
ASL
>Mature_403_residues
MNPGQGAGPHRRAADALQRATGALSTAAMARMEQDMPWFRDLSAEDRSWVGMIVQAGIRGFVDWYRQAVDQPAPGSTEMV
ASVFGAAPRALAGVINLQQTVDLVRLSIEVVESNVEQLLDPADAADVRAAVLRYAREVAFATAEVYARAAEVRGAWDARL
EALVVDAVLRSEADEALLSRASALGWAARGDVAVVLGSVPGARSESDTFDEVRRVARAAGMDALCAVQGDRLVVLLGGVG
EPRAAAEAVSDLFGEGPVVVGPVAADLAQAHVSARAALSAHRAAPGWPEAPRPVRSADLLPERVLAGDGHARRHLVDEVY
LPLVRARGTLIETIGAYYQHGSSIEATARALFVHPNTVRYRLRQVAELTGLAPGRARDAFTLEIALVLGRQSGRSARTPE
ASL

Specific function: Seems To Regulate The Expression Of The Operons For The Enzymes Involved In D-Galactarate, D-Glucarate And D-Glycerate Utilization. [C]

COG id: COG2508

COG function: function code TQ; Regulator of polyketide synthase expression

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CdaR family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 42701; Mature: 42701

Theoretical pI: Translated: 5.95; Mature: 5.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPGQGAGPHRRAADALQRATGALSTAAMARMEQDMPWFRDLSAEDRSWVGMIVQAGIRG
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHH
FVDWYRQAVDQPAPGSTEMVASVFGAAPRALAGVINLQQTVDLVRLSIEVVESNVEQLLD
HHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PADAADVRAAVLRYAREVAFATAEVYARAAEVRGAWDARLEALVVDAVLRSEADEALLSR
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHH
ASALGWAARGDVAVVLGSVPGARSESDTFDEVRRVARAAGMDALCAVQGDRLVVLLGGVG
HHHHCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCEEEEEECCCC
EPRAAAEAVSDLFGEGPVVVGPVAADLAQAHVSARAALSAHRAAPGWPEAPRPVRSADLL
CCHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCC
PERVLAGDGHARRHLVDEVYLPLVRARGTLIETIGAYYQHGSSIEATARALFVHPNTVRY
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHEEEEECCHHHHH
RLRQVAELTGLAPGRARDAFTLEIALVLGRQSGRSARTPEASL
HHHHHHHHHCCCCCCCCCHHEEEEEEEECCCCCCCCCCCCCCC
>Mature Secondary Structure
MNPGQGAGPHRRAADALQRATGALSTAAMARMEQDMPWFRDLSAEDRSWVGMIVQAGIRG
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHH
FVDWYRQAVDQPAPGSTEMVASVFGAAPRALAGVINLQQTVDLVRLSIEVVESNVEQLLD
HHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PADAADVRAAVLRYAREVAFATAEVYARAAEVRGAWDARLEALVVDAVLRSEADEALLSR
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHH
ASALGWAARGDVAVVLGSVPGARSESDTFDEVRRVARAAGMDALCAVQGDRLVVLLGGVG
HHHHCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCEEEEEECCCC
EPRAAAEAVSDLFGEGPVVVGPVAADLAQAHVSARAALSAHRAAPGWPEAPRPVRSADLL
CCHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCC
PERVLAGDGHARRHLVDEVYLPLVRARGTLIETIGAYYQHGSSIEATARALFVHPNTVRY
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHEEEEECCHHHHH
RLRQVAELTGLAPGRARDAFTLEIALVLGRQSGRSARTPEASL
HHHHHHHHHCCCCCCCCCHHEEEEEEEECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]