| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is 119716182
Identifier: 119716182
GI number: 119716182
Start: 2082175
End: 2082903
Strand: Reverse
Name: 119716182
Synonym: Noca_1950
Alternate gene names: NA
Gene position: 2082903-2082175 (Counterclockwise)
Preceding gene: 119716183
Following gene: 119716176
Centisome position: 41.78
GC content: 72.02
Gene sequence:
>729_bases ATGCTCAGCAGGCTCGCCACCGTCACCGCCGCACTCACCCTGGCCGGCGGGTTGTCGGCCGTCGCGGTGCCGGCGCTGAG ACAGCCGCCGGCGGTGCCGAGGGCCGTGGCACCTGCGCAGTTCGACAGGCCGCAGCAGAACGAGTACTTCCCGCTCGAGC CGGGCACGGTCACGCGCTATCGCGGCACCGACGAGGGTGACCGGTTCGTCGAGCGGGTGCGGGTCACGCACCGGACCAAG CGCATCCAGGGCGTCACGACGACCGTCGTCCGGGACACCCTGCGCCGCGCCGACGGCAGCCTGGCCGAGCAGACTTCCGA CTGGTACGCGGCCGACAACGACGGCAACGTCTGGTACTTCGGCGAAGCGACGGCGACCTATGACAGGTCGGGCCGCCTCG AGAGCCGCGAGGGCTCCTGGCGGGCGGGGGTGGACGGGGCCGTCGCCGGCCTGATCATGCCCGCGGAGCCACGCCCGACC GACGCCTACCGCCAGGAGTTCCTCAGGGGCGAGGCCGAGGACCAGGCCTGGATCGTGCAGCGCAACGCCTCGACCACCGT GCCCTACGGGACGCTCCATCACCTGGTGCGCAGCTTCGAGTGGACCCGCCTCGAGAAGCCGGTGCTCTCCCTCAAGCTCT ACGCCCCCGGCCTGGGCATCGTCCGGGAGAAGGACATGTCCGGCGGGAGCGAGTCGTTCGTCCTCGTCTCCGTGCGCCGG CACCGCTGA
Upstream 100 bases:
>100_bases CCGACCAGCTCTCGTGGCTGACCCGGGTGCTGCAGGGGGGTGTGCCCGCCCTCTAGGTGGGAACCATGCCAGTGCACGGT TCTCCGGAAGGGAGCACGCG
Downstream 100 bases:
>100_bases CGGTCGGGCCCCGGACGACGCTCAGCTCTCGAGCCAGCGCAGGTCGGGCCAGGCGGTGGCGACCACGTCGTGACCGAGCC GCGCCGCCACGGCCTCGTAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 242; Mature: 242
Protein sequence:
>242_residues MLSRLATVTAALTLAGGLSAVAVPALRQPPAVPRAVAPAQFDRPQQNEYFPLEPGTVTRYRGTDEGDRFVERVRVTHRTK RIQGVTTTVVRDTLRRADGSLAEQTSDWYAADNDGNVWYFGEATATYDRSGRLESREGSWRAGVDGAVAGLIMPAEPRPT DAYRQEFLRGEAEDQAWIVQRNASTTVPYGTLHHLVRSFEWTRLEKPVLSLKLYAPGLGIVREKDMSGGSESFVLVSVRR HR
Sequences:
>Translated_242_residues MLSRLATVTAALTLAGGLSAVAVPALRQPPAVPRAVAPAQFDRPQQNEYFPLEPGTVTRYRGTDEGDRFVERVRVTHRTK RIQGVTTTVVRDTLRRADGSLAEQTSDWYAADNDGNVWYFGEATATYDRSGRLESREGSWRAGVDGAVAGLIMPAEPRPT DAYRQEFLRGEAEDQAWIVQRNASTTVPYGTLHHLVRSFEWTRLEKPVLSLKLYAPGLGIVREKDMSGGSESFVLVSVRR HR >Mature_242_residues MLSRLATVTAALTLAGGLSAVAVPALRQPPAVPRAVAPAQFDRPQQNEYFPLEPGTVTRYRGTDEGDRFVERVRVTHRTK RIQGVTTTVVRDTLRRADGSLAEQTSDWYAADNDGNVWYFGEATATYDRSGRLESREGSWRAGVDGAVAGLIMPAEPRPT DAYRQEFLRGEAEDQAWIVQRNASTTVPYGTLHHLVRSFEWTRLEKPVLSLKLYAPGLGIVREKDMSGGSESFVLVSVRR HR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26870; Mature: 26870
Theoretical pI: Translated: 9.58; Mature: 9.58
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLSRLATVTAALTLAGGLSAVAVPALRQPPAVPRAVAPAQFDRPQQNEYFPLEPGTVTRY CCCHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCEEEE RGTDEGDRFVERVRVTHRTKRIQGVTTTVVRDTLRRADGSLAEQTSDWYAADNDGNVWYF CCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHCCCCEEECCCCCEEEE GEATATYDRSGRLESREGSWRAGVDGAVAGLIMPAEPRPTDAYRQEFLRGEAEDQAWIVQ ECCEEECCCCCCCCCCCCCCCCCCCCHHEEEEECCCCCCCHHHHHHHHCCCCCCCEEEEE RNASTTVPYGTLHHLVRSFEWTRLEKPVLSLKLYAPGLGIVREKDMSGGSESFVLVSVRR CCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEEEECCCCCCCCCEEEEEEEC HR CC >Mature Secondary Structure MLSRLATVTAALTLAGGLSAVAVPALRQPPAVPRAVAPAQFDRPQQNEYFPLEPGTVTRY CCCHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCEEEE RGTDEGDRFVERVRVTHRTKRIQGVTTTVVRDTLRRADGSLAEQTSDWYAADNDGNVWYF CCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHCCCCEEECCCCCEEEE GEATATYDRSGRLESREGSWRAGVDGAVAGLIMPAEPRPTDAYRQEFLRGEAEDQAWIVQ ECCEEECCCCCCCCCCCCCCCCCCCCHHEEEEECCCCCCCHHHHHHHHCCCCCCCEEEEE RNASTTVPYGTLHHLVRSFEWTRLEKPVLSLKLYAPGLGIVREKDMSGGSESFVLVSVRR CCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEEEECCCCCCCCCEEEEEEEC HR CC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA