| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
Click here to switch to the map view.
The map label for this gene is dnaG [H]
Identifier: 119716179
GI number: 119716179
Start: 2077725
End: 2080523
Strand: Direct
Name: dnaG [H]
Synonym: Noca_1947
Alternate gene names: 119716179
Gene position: 2077725-2080523 (Clockwise)
Preceding gene: 119716178
Following gene: 119716180
Centisome position: 41.67
GC content: 68.95
Gene sequence:
>2799_bases GTGGCAGGGCGGATCCGTGATGAAGACATCGCCGAGGTGCGCGAGAAGGCACGCATCGACGACGTCGTCTCGCAGTACGT GACGCTGCGCCCGGCCGGCGGCGGCTCGCTCAAGGGGCTCTGCCCGTTCCACGACGAGAAGTCCCCGTCGTTCAACGTCA ACCCGAGTCGCGGGTTCTTCCATTGCCTGGCCGGCGAGACCAAGGTCTTGACCTGGGACGGGCCGCGGCCGATCAGCGAG CTTGCCGGTGGCACCCACCGGATCCTCAACGTGCACGGCGACTGGGCAGAAGCGCCCTTGAAGTCCTACGGCGTGCAGCG GCTGTGGCGGATCGTCGTCACGCGGAACCGTGAGCGCAAAGAGCTCTTTGCGACCGACGGCCACCGCTGGTTCGTTCCCT CTGGAAGGACTGGATCGAAGCATCGTGAGGTGCTGACCAAGGAGCTCAAGGCCGGCGATCGACTGGTCTCGAAGTTCCCT CGCTCGCGGATCCAGCGGACGACACCGTCACCGTTCGGCATCGCGCACGGGTTCACCTACGGCGACGGGACCCGGTCGGG CACCGGCAGCATGGCACTGCTGCGCCCCCCGAAGGACCTGGCGATGCTGAAGTGGTTCTCGAACAGCCACACCTCGGCTT CAGGTGACAACCTCCTGGTGCACCATCTACCGCGCTTCTTCAAGGAGCTGCCCGACCCCGATGAGTCGGTCTCCTACCTG TACGGGTGGCTGGCCGGCTACTTCGCCGCCGACGGCTGCGTCGCGGCCGATGGGACCGTGATCCTCAACTCGGCCCGGCG GGAGAACCTCGAGTTCGTACGGATGGTCACCACGCGACTCGGCATCGCGACCTATGGCATCACCACCCAGTCGCGAGTAG GGCTGGGGAAGGAGCACTCCGACCTGCACCGGGTGCACTTCGTCAACGACGACCTCACCGAGAGCTTCTTCCTCCTCGAC GAGCACCGGCGGCGCTTCGCGGAGGCGACCAAGAAGTATGCGCGACGGGGGTGGGTGGTCCAGGCGGTCGAGGAGACGGA CCGCGTCGAGGAGGTGTATTGCGCGGAGGTCGAGGACGGTCACGCGTTCACGCTCGAGGACAACATCCTCACCGGCAACT GCTTCGGTTGCTCCGAGGGCGGCAACGTCATCACGTTCCTGATGAAGATCGACGGCCTGACCTTCGGGGAGGCGGTCGAG CGGCTCGCGGACAAGGTCGGCGTGCAGCTGCGCCGCGAGGAGGGCGACGTCCGCGAGGAACGGCCCAAGGGTCCGCCGCG GCGGCGGCTCGTGGAGGCGCACAAGGTCGCCCAGGAGTACTACGCCGACCAGCTCGCCACCCCGGACGCTCTCGTCGCGC GGCAGTTCCTCGGTGGGCGCGGCTTCGACCAGGCCGCGGCCGAGCACTTCGGCATCGGCTTCGCTCCTCGCGATGGGGAC GCCCTGAAGACGCACCTGCGCCAGAAGGGCTTCAGTGCCGAGGAGATGACGGTCGGCGGGCTGATCGGCCCGTCGGGCTA CGACCGGTTCCGCGGCCGGCTGCTCTGGCCGATCCGCGACGCCAGCGGCGACACGATCGGCTTCGGTGCCCGCCGGATCT TCGACGACGACCGGATCGACGCCAAGTACCTCAACACCTCCGAGACCCCGATCTACAAGAAGAGCCAGGTGCTCTACGGC ATCGACCTGGCCCGGCGCGACATCGGCCGCTCCTCCCAGGCGGTGATCGTCGAGGGCTACACCGACGTGATGGCCTGCCA CCTCTCCGGCGTGACCACCGCGGTCGCGACCTGCGGCACCGCGTTCGGCGACGACCACTCTCGCGTGCTGCGCCGCTTCC TCAACGACCACCAGGTCACTCACGGCGAGATCATCTTCACCTTCGACGGCGACGCCGCCGGCCAGAAGGCCGCGCTCCGT GCCTTCGGCGGTGACCAGAACTTCGTCTCCCAGACGTACGTCGCCGTCGAGCCCGGCGGGCTCGACCCGTGCGACCTGCG GATCCAGCAGGGCGACGCCGCGGTCCGCGAGCTGGTCGCCCGCCGGGTGCCGCTCTACCGATTCGTCCTCACCAATGTCG TTCGGGAGTTCGACCTGGATAGGGCGGACGGCCGGATCGCCGCCGTGAGGGAAGCCGCAAAGCTCGTGCTGAGTAGTCGC GACAACTCCGTGGCCCAGAGCTCCTTTGCTCGCGACATCTCCGAGCTCACAGGAGTCGACCCGAACGAGGTCCTCGTCGA AGTCAGGCGCGTCGTGGCGCGGCATCGGAACGGGGACCGCGGGGCGGTTGCCGAACCGCCGACGAATCGGAGTGCGGTTC CCAGCCTGCACGACCCGCGGTTCGCGATCGAGCGCGAGACCCTCCAGCTGGTCATCCAGCACCCGATGACGATCGGTCGC AGCACCGGCGACATCGGCCCCAACGACTTCGTCCACCCGACCTACCGGGCGGTGTGGGAGCTGGTCGCGGCGGCCGGCGG CCCCGGCGCGGGCGCCGGCGACCCGTCCTGGGCCAACCGGCTGCGCGACGCCGCGACCGACCCGGCGGCCTCCTCGGTGA TCAGCGCACTCGCCGTCGAGCCGCTCAAGAAGGAGCCGGACGCCGCGTACGTCGCCGAGCACGTGTTCCGGCTGCTCGAG CTCACCGCGGCCCGGCGGATCGCGGCCATCAAGTCCAAGCTGCAGCGCACCAACCCGGTCGAGCATGCGGAGGAGTTCAA CAAGATGTTCGGAGAGCTCGCCGCGCTGGAGGCGCACCGCCGGGCGCTGCGCGACCGGCTCGCGGGGAGTGCCACGTGA
Upstream 100 bases:
>100_bases GTACCGGCTGGTGCGCGACCAGCTGCACCGTTACGCGGCGGGGGAGCGGCTGTGGAACATCATGTCCGACGACTACTGAC CGGGACATAGACTCCGCACC
Downstream 100 bases:
>100_bases GCCCCTGGCGTCGCCAGCGCCCGCCGATCCGGGTCGAGCGCGGCGAGCGGCTCCTCGCCGACGCCGTCGCGGCCGAGGGC CACCTCGGCGGCACCCGCGA
Product: DNA primase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 932; Mature: 931
Protein sequence:
>932_residues MAGRIRDEDIAEVREKARIDDVVSQYVTLRPAGGGSLKGLCPFHDEKSPSFNVNPSRGFFHCLAGETKVLTWDGPRPISE LAGGTHRILNVHGDWAEAPLKSYGVQRLWRIVVTRNRERKELFATDGHRWFVPSGRTGSKHREVLTKELKAGDRLVSKFP RSRIQRTTPSPFGIAHGFTYGDGTRSGTGSMALLRPPKDLAMLKWFSNSHTSASGDNLLVHHLPRFFKELPDPDESVSYL YGWLAGYFAADGCVAADGTVILNSARRENLEFVRMVTTRLGIATYGITTQSRVGLGKEHSDLHRVHFVNDDLTESFFLLD EHRRRFAEATKKYARRGWVVQAVEETDRVEEVYCAEVEDGHAFTLEDNILTGNCFGCSEGGNVITFLMKIDGLTFGEAVE RLADKVGVQLRREEGDVREERPKGPPRRRLVEAHKVAQEYYADQLATPDALVARQFLGGRGFDQAAAEHFGIGFAPRDGD ALKTHLRQKGFSAEEMTVGGLIGPSGYDRFRGRLLWPIRDASGDTIGFGARRIFDDDRIDAKYLNTSETPIYKKSQVLYG IDLARRDIGRSSQAVIVEGYTDVMACHLSGVTTAVATCGTAFGDDHSRVLRRFLNDHQVTHGEIIFTFDGDAAGQKAALR AFGGDQNFVSQTYVAVEPGGLDPCDLRIQQGDAAVRELVARRVPLYRFVLTNVVREFDLDRADGRIAAVREAAKLVLSSR DNSVAQSSFARDISELTGVDPNEVLVEVRRVVARHRNGDRGAVAEPPTNRSAVPSLHDPRFAIERETLQLVIQHPMTIGR STGDIGPNDFVHPTYRAVWELVAAAGGPGAGAGDPSWANRLRDAATDPAASSVISALAVEPLKKEPDAAYVAEHVFRLLE LTAARRIAAIKSKLQRTNPVEHAEEFNKMFGELAALEAHRRALRDRLAGSAT
Sequences:
>Translated_932_residues MAGRIRDEDIAEVREKARIDDVVSQYVTLRPAGGGSLKGLCPFHDEKSPSFNVNPSRGFFHCLAGETKVLTWDGPRPISE LAGGTHRILNVHGDWAEAPLKSYGVQRLWRIVVTRNRERKELFATDGHRWFVPSGRTGSKHREVLTKELKAGDRLVSKFP RSRIQRTTPSPFGIAHGFTYGDGTRSGTGSMALLRPPKDLAMLKWFSNSHTSASGDNLLVHHLPRFFKELPDPDESVSYL YGWLAGYFAADGCVAADGTVILNSARRENLEFVRMVTTRLGIATYGITTQSRVGLGKEHSDLHRVHFVNDDLTESFFLLD EHRRRFAEATKKYARRGWVVQAVEETDRVEEVYCAEVEDGHAFTLEDNILTGNCFGCSEGGNVITFLMKIDGLTFGEAVE RLADKVGVQLRREEGDVREERPKGPPRRRLVEAHKVAQEYYADQLATPDALVARQFLGGRGFDQAAAEHFGIGFAPRDGD ALKTHLRQKGFSAEEMTVGGLIGPSGYDRFRGRLLWPIRDASGDTIGFGARRIFDDDRIDAKYLNTSETPIYKKSQVLYG IDLARRDIGRSSQAVIVEGYTDVMACHLSGVTTAVATCGTAFGDDHSRVLRRFLNDHQVTHGEIIFTFDGDAAGQKAALR AFGGDQNFVSQTYVAVEPGGLDPCDLRIQQGDAAVRELVARRVPLYRFVLTNVVREFDLDRADGRIAAVREAAKLVLSSR DNSVAQSSFARDISELTGVDPNEVLVEVRRVVARHRNGDRGAVAEPPTNRSAVPSLHDPRFAIERETLQLVIQHPMTIGR STGDIGPNDFVHPTYRAVWELVAAAGGPGAGAGDPSWANRLRDAATDPAASSVISALAVEPLKKEPDAAYVAEHVFRLLE LTAARRIAAIKSKLQRTNPVEHAEEFNKMFGELAALEAHRRALRDRLAGSAT >Mature_931_residues AGRIRDEDIAEVREKARIDDVVSQYVTLRPAGGGSLKGLCPFHDEKSPSFNVNPSRGFFHCLAGETKVLTWDGPRPISEL AGGTHRILNVHGDWAEAPLKSYGVQRLWRIVVTRNRERKELFATDGHRWFVPSGRTGSKHREVLTKELKAGDRLVSKFPR SRIQRTTPSPFGIAHGFTYGDGTRSGTGSMALLRPPKDLAMLKWFSNSHTSASGDNLLVHHLPRFFKELPDPDESVSYLY GWLAGYFAADGCVAADGTVILNSARRENLEFVRMVTTRLGIATYGITTQSRVGLGKEHSDLHRVHFVNDDLTESFFLLDE HRRRFAEATKKYARRGWVVQAVEETDRVEEVYCAEVEDGHAFTLEDNILTGNCFGCSEGGNVITFLMKIDGLTFGEAVER LADKVGVQLRREEGDVREERPKGPPRRRLVEAHKVAQEYYADQLATPDALVARQFLGGRGFDQAAAEHFGIGFAPRDGDA LKTHLRQKGFSAEEMTVGGLIGPSGYDRFRGRLLWPIRDASGDTIGFGARRIFDDDRIDAKYLNTSETPIYKKSQVLYGI DLARRDIGRSSQAVIVEGYTDVMACHLSGVTTAVATCGTAFGDDHSRVLRRFLNDHQVTHGEIIFTFDGDAAGQKAALRA FGGDQNFVSQTYVAVEPGGLDPCDLRIQQGDAAVRELVARRVPLYRFVLTNVVREFDLDRADGRIAAVREAAKLVLSSRD NSVAQSSFARDISELTGVDPNEVLVEVRRVVARHRNGDRGAVAEPPTNRSAVPSLHDPRFAIERETLQLVIQHPMTIGRS TGDIGPNDFVHPTYRAVWELVAAAGGPGAGAGDPSWANRLRDAATDPAASSVISALAVEPLKKEPDAAYVAEHVFRLLEL TAARRIAAIKSKLQRTNPVEHAEEFNKMFGELAALEAHRRALRDRLAGSAT
Specific function: DNA primase is the polymerase that synthesizes small RNA primers for the Okazaki fragments on both template strands at replication forks during chromosomal DNA synthesis [H]
COG id: COG0358
COG function: function code L; DNA primase (bacterial type)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 Toprim domain [H]
Homologues:
Organism=Escherichia coli, GI1789447, Length=357, Percent_Identity=33.3333333333333, Blast_Score=172, Evalue=1e-43,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013264 - InterPro: IPR019475 - InterPro: IPR006295 - InterPro: IPR013173 - InterPro: IPR006171 - InterPro: IPR002694 [H]
Pfam domain/function: PF10410 DnaB_bind; PF01751 Toprim; PF08275 Toprim_N; PF01807 zf-CHC2 [H]
EC number: 2.7.7.-
Molecular weight: Translated: 102864; Mature: 102733
Theoretical pI: Translated: 7.46; Mature: 7.46
Prosite motif: PS50817 INTEIN_N_TER ; PS50818 INTEIN_C_TER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAGRIRDEDIAEVREKARIDDVVSQYVTLRPAGGGSLKGLCPFHDEKSPSFNVNPSRGFF CCCCCCCHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEE HCLAGETKVLTWDGPRPISELAGGTHRILNVHGDWAEAPLKSYGVQRLWRIVVTRNRERK EEECCCEEEEEECCCCCHHHHCCCCEEEEEECCCHHHCCHHHHHHHHHHHHHHHCCCCHH ELFATDGHRWFVPSGRTGSKHREVLTKELKAGDRLVSKFPRSRIQRTTPSPFGIAHGFTY HHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCC GDGTRSGTGSMALLRPPKDLAMLKWFSNSHTSASGDNLLVHHLPRFFKELPDPDESVSYL CCCCCCCCCCEEEECCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHH YGWLAGYFAADGCVAADGTVILNSARRENLEFVRMVTTRLGIATYGITTQSRVGLGKEHS HHHHHHHHHCCCCEECCCEEEEECHHHCCHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCC DLHRVHFVNDDLTESFFLLDEHRRRFAEATKKYARRGWVVQAVEETDRVEEVYCAEVEDG CCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHEEECCCC HAFTLEDNILTGNCFGCSEGGNVITFLMKIDGLTFGEAVERLADKVGVQLRREEGDVREE CEEEEECCEEECCCCCCCCCCCEEEEEEHHCCCCHHHHHHHHHHHHCCEEECCCCCHHHC RPKGPPRRRLVEAHKVAQEYYADQLATPDALVARQFLGGRGFDQAAAEHFGIGFAPRDGD CCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCH ALKTHLRQKGFSAEEMTVGGLIGPSGYDRFRGRLLWPIRDASGDTIGFGARRIFDDDRID HHHHHHHHCCCCHHHEEECCEECCCCHHHHCCEEEEEEECCCCCEECCCHHHHCCCCCCC AKYLNTSETPIYKKSQVLYGIDLARRDIGRSSQAVIVEGYTDVMACHLSGVTTAVATCGT HHCCCCCCCCCEECCCEEEEHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHCC AFGDDHSRVLRRFLNDHQVTHGEIIFTFDGDAAGQKAALRAFGGDQNFVSQTYVAVEPGG CCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHCCCCCHHHHCEEEEECCCC LDPCDLRIQQGDAAVRELVARRVPLYRFVLTNVVREFDLDRADGRIAAVREAAKLVLSSR CCHHHEEEECCCHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCC DNSVAQSSFARDISELTGVDPNEVLVEVRRVVARHRNGDRGAVAEPPTNRSAVPSLHDPR CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC FAIERETLQLVIQHPMTIGRSTGDIGPNDFVHPTYRAVWELVAAAGGPGAGAGDPSWANR HHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHH LRDAATDPAASSVISALAVEPLKKEPDAAYVAEHVFRLLELTAARRIAAIKSKLQRTNPV HHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH EHAEEFNKMFGELAALEAHRRALRDRLAGSAT HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure AGRIRDEDIAEVREKARIDDVVSQYVTLRPAGGGSLKGLCPFHDEKSPSFNVNPSRGFF CCCCCCHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEE HCLAGETKVLTWDGPRPISELAGGTHRILNVHGDWAEAPLKSYGVQRLWRIVVTRNRERK EEECCCEEEEEECCCCCHHHHCCCCEEEEEECCCHHHCCHHHHHHHHHHHHHHHCCCCHH ELFATDGHRWFVPSGRTGSKHREVLTKELKAGDRLVSKFPRSRIQRTTPSPFGIAHGFTY HHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCC GDGTRSGTGSMALLRPPKDLAMLKWFSNSHTSASGDNLLVHHLPRFFKELPDPDESVSYL CCCCCCCCCCEEEECCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHH YGWLAGYFAADGCVAADGTVILNSARRENLEFVRMVTTRLGIATYGITTQSRVGLGKEHS HHHHHHHHHCCCCEECCCEEEEECHHHCCHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCC DLHRVHFVNDDLTESFFLLDEHRRRFAEATKKYARRGWVVQAVEETDRVEEVYCAEVEDG CCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHEEECCCC HAFTLEDNILTGNCFGCSEGGNVITFLMKIDGLTFGEAVERLADKVGVQLRREEGDVREE CEEEEECCEEECCCCCCCCCCCEEEEEEHHCCCCHHHHHHHHHHHHCCEEECCCCCHHHC RPKGPPRRRLVEAHKVAQEYYADQLATPDALVARQFLGGRGFDQAAAEHFGIGFAPRDGD CCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCH ALKTHLRQKGFSAEEMTVGGLIGPSGYDRFRGRLLWPIRDASGDTIGFGARRIFDDDRID HHHHHHHHCCCCHHHEEECCEECCCCHHHHCCEEEEEEECCCCCEECCCHHHHCCCCCCC AKYLNTSETPIYKKSQVLYGIDLARRDIGRSSQAVIVEGYTDVMACHLSGVTTAVATCGT HHCCCCCCCCCEECCCEEEEHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHCC AFGDDHSRVLRRFLNDHQVTHGEIIFTFDGDAAGQKAALRAFGGDQNFVSQTYVAVEPGG CCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHCCCCCHHHHCEEEEECCCC LDPCDLRIQQGDAAVRELVARRVPLYRFVLTNVVREFDLDRADGRIAAVREAAKLVLSSR CCHHHEEEECCCHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCC DNSVAQSSFARDISELTGVDPNEVLVEVRRVVARHRNGDRGAVAEPPTNRSAVPSLHDPR CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC FAIERETLQLVIQHPMTIGRSTGDIGPNDFVHPTYRAVWELVAAAGGPGAGAGDPSWANR HHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHH LRDAATDPAASSVISALAVEPLKKEPDAAYVAEHVFRLLELTAARRIAAIKSKLQRTNPV HHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH EHAEEFNKMFGELAALEAHRRALRDRLAGSAT HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Transferring phosphorus-containing groups; Nucleotidyltransferases [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12000953 [H]