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The map label for this gene is ybeY [C]

Identifier: 119716145

GI number: 119716145

Start: 2040954

End: 2041403

Strand: Direct

Name: ybeY [C]

Synonym: Noca_1913

Alternate gene names: 119716145

Gene position: 2040954-2041403 (Clockwise)

Preceding gene: 119716144

Following gene: 119716146

Centisome position: 40.93

GC content: 70.89

Gene sequence:

>450_bases
ATGAGCATCGAGATCCTCAACGAGTCCGGGCATCCGCTGGACGTGAAGCGGCTTGCCGCGCTGAGCCGGTTCGTGATGGA
CCGGATGCGCGTGCACCCGCTGGCCGAGCTGTGCATCAAGGCGGTCGACGAGCCCACCATCGCGCAGCTCAACGAGCAGT
GGATGGAGAAGGCGGGCCCCACCGACGTGCTCGCCTTCCCGATGGACGAGCTGCGCCCCGGCCTGGTCGACGAGGATCCC
GAGGAGGGCGTGCTCGGCGACCTGGTGCTCTGCCCCGACGTCGCCGCCCGCCAGGGCGAGACCGCCGGGCACGGCACCGA
GGCCGAGATCGAGCTGCTCACGGTGCACGGCATCCTCCACCTGCTCGGCTACGACCACGCCGAGCCGGAGGAGCACCGGG
AGATGTTCGGCCTCCAGGACGAGCTCCTGGCCGCCTGGCGCGCCCGGTGA

Upstream 100 bases:

>100_bases
ATCGTCGCGGCCTACGACGACTTCGACGCCCGCTCCGGCCGTTCGCAGGAGCTCAAGCAGGCCAACCGCCCCGGGCCGCG
TTGAGTCCCGGGAGCCACCG

Downstream 100 bases:

>100_bases
CGGGGCCGGTGAACGGTCCAGTGAGACCTCGGTGAGCGTCTGGCTGCTGCTGGCCGCGGCCGTCCTGGTCGGGCTGGCCG
GGCTGTTCTCGGCGACGGAC

Product: putative metalloprotease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 149; Mature: 148

Protein sequence:

>149_residues
MSIEILNESGHPLDVKRLAALSRFVMDRMRVHPLAELCIKAVDEPTIAQLNEQWMEKAGPTDVLAFPMDELRPGLVDEDP
EEGVLGDLVLCPDVAARQGETAGHGTEAEIELLTVHGILHLLGYDHAEPEEHREMFGLQDELLAAWRAR

Sequences:

>Translated_149_residues
MSIEILNESGHPLDVKRLAALSRFVMDRMRVHPLAELCIKAVDEPTIAQLNEQWMEKAGPTDVLAFPMDELRPGLVDEDP
EEGVLGDLVLCPDVAARQGETAGHGTEAEIELLTVHGILHLLGYDHAEPEEHREMFGLQDELLAAWRAR
>Mature_148_residues
SIEILNESGHPLDVKRLAALSRFVMDRMRVHPLAELCIKAVDEPTIAQLNEQWMEKAGPTDVLAFPMDELRPGLVDEDPE
EGVLGDLVLCPDVAARQGETAGHGTEAEIELLTVHGILHLLGYDHAEPEEHREMFGLQDELLAAWRAR

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

Organism=Escherichia coli, GI1786880, Length=111, Percent_Identity=40.5405405405405, Blast_Score=66, Evalue=8e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_NOCSJ (A1SHY8)

Other databases:

- EMBL:   CP000509
- RefSeq:   YP_923110.1
- ProteinModelPortal:   A1SHY8
- SMR:   A1SHY8
- STRING:   A1SHY8
- GeneID:   4596360
- GenomeReviews:   CP000509_GR
- KEGG:   nca:Noca_1913
- eggNOG:   COG0319
- HOGENOM:   HBG734136
- OMA:   MDVHPAA
- PhylomeDB:   A1SHY8
- ProtClustDB:   PRK00016
- BioCyc:   NSP35761:NOCA_1913-MONOMER
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 16580; Mature: 16449

Theoretical pI: Translated: 4.28; Mature: 4.28

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIEILNESGHPLDVKRLAALSRFVMDRMRVHPLAELCIKAVDEPTIAQLNEQWMEKAGP
CCEEEECCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHCCC
TDVLAFPMDELRPGLVDEDPEEGVLGDLVLCPDVAARQGETAGHGTEAEIELLTVHGILH
CCEEECCHHHHCCCCCCCCCCCCCCCCEEECCCHHHHCCCCCCCCCCCCEEHHHHHHHHH
LLGYDHAEPEEHREMFGLQDELLAAWRAR
HHCCCCCCHHHHHHHHCCHHHHHHHHCCC
>Mature Secondary Structure 
SIEILNESGHPLDVKRLAALSRFVMDRMRVHPLAELCIKAVDEPTIAQLNEQWMEKAGP
CEEEECCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHCCC
TDVLAFPMDELRPGLVDEDPEEGVLGDLVLCPDVAARQGETAGHGTEAEIELLTVHGILH
CCEEECCHHHHCCCCCCCCCCCCCCCCEEECCCHHHHCCCCCCCCCCCCEEHHHHHHHHH
LLGYDHAEPEEHREMFGLQDELLAAWRAR
HHCCCCCCHHHHHHHHCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA