| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is 119716138
Identifier: 119716138
GI number: 119716138
Start: 2035511
End: 2036395
Strand: Reverse
Name: 119716138
Synonym: Noca_1906
Alternate gene names: NA
Gene position: 2036395-2035511 (Counterclockwise)
Preceding gene: 119716139
Following gene: 119716134
Centisome position: 40.84
GC content: 74.58
Gene sequence:
>885_bases ATGAGCGTCCGCACCCGCTTCGCCGTACTGCTGTCCGCCGCCGTCTGCCTGGGCGCGCTGGCCGCGTGCGGGAGTGACCA GACCGCCGAGGACCCGTCGCCTGCGAGCGGCTCGACCCAGGGCCGGGCCGAGAGCTCGGCGCCGTCGGAGCCCTCCGAGA GCGCGGCCGAGACCGTCGCCGTGCCGGTCTACTTCGTCGGCGACACCCCGCAGGGGCCGCGGCTCTACCGCGAGTTCCGG CAGGTCCCGGCCGACGACCCGGCGGCCGGCGCCCTGGCCCTGATGACCTCCGGCGACGCGCTCGACCCCGACTACCGGAC GCTCTACCCGGGCGGCTCGTTCGCCGGCGTGCAGGTCGACGCGGACCCGATCGTCGTGGAGCTGCCCGACGAGAGCTGGA CCACCGCCCCGGACGGGATGTCGCAGGACGACGCCCGGCTCGCCGCGCAGCAGCTGGTCTACACCCTCCAGGGCGTCGCC CAGGCGCGCAAGCCGGTCGCGATCCGGCTCGACGGCGCGCCCGCCGACCTGTTCGGCCTGGGCGGCGAGCTGGCCGACGA GCCGGAGCTGGACGTCCGGGCCCTGGTCAACGTGACCAGCCCCGAGGAGGGCGCGACCGTGAGCGGCACGTTCACCGCGA GCGGGGTGTCCAGCTCGTTCGAGGCCACCACGCCGTGGGAGGTCCGTGCCGAGGACGGCACCGTGGCCGCGAAGGGCTTC GCCACGGCCGAGGGCTGGATGGACAAGCTCTACCCGTGGGAGACCGAGGTCGACGTCTCCGACCTCGAGCCCGGCACCTA CACGTTCGTGGCGATGACCGACGACCCCTCCGGCGGCGAGGGCCACGGCCCGACCGAGGACACCAAGACCATCACCGTGC AGTGA
Upstream 100 bases:
>100_bases CGAGGACGACCCGTCGGGCGGCGCCGAGGGATCGCACCCGGCGGTCGACACGCGCACGATCATCGTCCGCTGAGTGCCCC GCGACCGAGAGGATGGAGCC
Downstream 100 bases:
>100_bases GTCCGCCGCGGGCTCGGGCCCGCGCAGGTGGCCGGGCTGCCGCCGAGTTTCATCGGCAGCTTGCCGGCTCAGCGCCAGCG CGGCGTGCGGGAGAGCAGCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 294; Mature: 293
Protein sequence:
>294_residues MSVRTRFAVLLSAAVCLGALAACGSDQTAEDPSPASGSTQGRAESSAPSEPSESAAETVAVPVYFVGDTPQGPRLYREFR QVPADDPAAGALALMTSGDALDPDYRTLYPGGSFAGVQVDADPIVVELPDESWTTAPDGMSQDDARLAAQQLVYTLQGVA QARKPVAIRLDGAPADLFGLGGELADEPELDVRALVNVTSPEEGATVSGTFTASGVSSSFEATTPWEVRAEDGTVAAKGF ATAEGWMDKLYPWETEVDVSDLEPGTYTFVAMTDDPSGGEGHGPTEDTKTITVQ
Sequences:
>Translated_294_residues MSVRTRFAVLLSAAVCLGALAACGSDQTAEDPSPASGSTQGRAESSAPSEPSESAAETVAVPVYFVGDTPQGPRLYREFR QVPADDPAAGALALMTSGDALDPDYRTLYPGGSFAGVQVDADPIVVELPDESWTTAPDGMSQDDARLAAQQLVYTLQGVA QARKPVAIRLDGAPADLFGLGGELADEPELDVRALVNVTSPEEGATVSGTFTASGVSSSFEATTPWEVRAEDGTVAAKGF ATAEGWMDKLYPWETEVDVSDLEPGTYTFVAMTDDPSGGEGHGPTEDTKTITVQ >Mature_293_residues SVRTRFAVLLSAAVCLGALAACGSDQTAEDPSPASGSTQGRAESSAPSEPSESAAETVAVPVYFVGDTPQGPRLYREFRQ VPADDPAAGALALMTSGDALDPDYRTLYPGGSFAGVQVDADPIVVELPDESWTTAPDGMSQDDARLAAQQLVYTLQGVAQ ARKPVAIRLDGAPADLFGLGGELADEPELDVRALVNVTSPEEGATVSGTFTASGVSSSFEATTPWEVRAEDGTVAAKGFA TAEGWMDKLYPWETEVDVSDLEPGTYTFVAMTDDPSGGEGHGPTEDTKTITVQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30528; Mature: 30396
Theoretical pI: Translated: 3.76; Mature: 3.76
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVRTRFAVLLSAAVCLGALAACGSDQTAEDPSPASGSTQGRAESSAPSEPSESAAETVA CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCEEE VPVYFVGDTPQGPRLYREFRQVPADDPAAGALALMTSGDALDPDYRTLYPGGSFAGVQVD EEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCEEECCCCCEEEEEEC ADPIVVELPDESWTTAPDGMSQDDARLAAQQLVYTLQGVAQARKPVAIRLDGAPADLFGL CCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHC GGELADEPELDVRALVNVTSPEEGATVSGTFTASGVSSSFEATTPWEVRAEDGTVAAKGF CCCCCCCCCCCEEEEEEECCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCEEECCC ATAEGWMDKLYPWETEVDVSDLEPGTYTFVAMTDDPSGGEGHGPTEDTKTITVQ CCHHHHHHHCCCCCCCCCHHCCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEC >Mature Secondary Structure SVRTRFAVLLSAAVCLGALAACGSDQTAEDPSPASGSTQGRAESSAPSEPSESAAETVA CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCEEE VPVYFVGDTPQGPRLYREFRQVPADDPAAGALALMTSGDALDPDYRTLYPGGSFAGVQVD EEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCEEECCCCCEEEEEEC ADPIVVELPDESWTTAPDGMSQDDARLAAQQLVYTLQGVAQARKPVAIRLDGAPADLFGL CCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHC GGELADEPELDVRALVNVTSPEEGATVSGTFTASGVSSSFEATTPWEVRAEDGTVAAKGF CCCCCCCCCCCEEEEEEECCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCEEECCC ATAEGWMDKLYPWETEVDVSDLEPGTYTFVAMTDDPSGGEGHGPTEDTKTITVQ CCHHHHHHHCCCCCCCCCHHCCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA