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The map label for this gene is thcR [H]

Identifier: 119716059

GI number: 119716059

Start: 1945445

End: 1946479

Strand: Reverse

Name: thcR [H]

Synonym: Noca_1825

Alternate gene names: 119716059

Gene position: 1946479-1945445 (Counterclockwise)

Preceding gene: 119716060

Following gene: 119716058

Centisome position: 39.04

GC content: 68.21

Gene sequence:

>1035_bases
ATGGATTGGTCGGCGTTGCCCTATGCGCGCGCCCTCAGCCCAGGGGGCCCTGGTTCGGCGCTACCGGCCGCGGCCCGGAC
TGCGAGCCAACTCGTCCTTGACCCCGATCTGGCGGCGGAGCTGATCTCGGAGGCCTATCTTCCAGTCCGGGTTCGACCCC
AGCATGCGGGCACAGACTTCCAGATGCAGATGGCAGTCCTCCTGGTAGGCACCATGACGGCCGGCGTGCTCACCGTCGCC
GCGAGTTCTCGGATCACCGCCGAGGAGACCGAGCAGTTCCACCTCAACGTGACGCTGCGCGGACATGCCGTGTCCAGACG
CCGCGGCGCCGGCCGCATCGTGACCGATGCGGGTGGCGGCGTCCTGTTCGACCCCGGGCAGGACGCTGACATCTTGTGGT
CCGACGACTGTAGCCAACTGTGCCTGATGATCCCCCGAGAGACGCTGGAATCGGAGATCGCGGCGCTGCTCGGCCGGACC
GTCTCGAAGCCACTGGCCTTCACCCCACACCTCAGGCTCGACTCGCTCGCGGGCCGCTTGTTGGCCCCGTTGGTTCAGGT
GCTGGTCTCGGAGCTCCACGGTCCCTCGGCGGTACAGCGCTTCCCGAGTGTCGGCCGGCACCTCGAAGGTCTCGTGCTCG
ACGCGTTGCTCCTCGGCCAGCGGCACAACTACACCGACCTCCTGGACCGTCCGTCCTCGGCCGCAAGAACACCCATCCAG
CACGCGGTCGAGCTGATCCATTCCAGGCCCGAACATCCCTGGACCACGGTCGGCCTCGCCCAGGAGGTGCATCTCAGCGT
CCGCGCGCTGCAGGAAGGATTTCGCCGCCACCACGACCTGCCCCCGATGGCCTACCTCCGCGAGGTCCGGCTGTTGCGGG
CTCACCGCCTGCTCTTGGGCGCCGATCCCGACGGCCTCCAGGTGCAGGACGTTGCGGCCGGTCTCGGATTCAAGCATCAC
GGCCGGTTCTCGACCCTCTATCGCGAGCGGTTCGGCGAGCCCCCGTCGGCCACCTTGAGTCGGTCACCCTCCTGA

Upstream 100 bases:

>100_bases
GGCGACTCCCCCAGGAGGTTGCGTGCCGCCTGGGCCCCTTGAAGAATGAGCCGTGCGGCGGCCGTCGGAAGACTAGCGGG
CATCAAAGAAGGGGCTCGGG

Downstream 100 bases:

>100_bases
GCCGGAACGAATGTCGACGACGAGGACGGACCCGGGCGCGGATCCGTGATCCAGCCCACACGACGGGTATCGCTCGCTAT
CCCGATTGCGCGGGCGCCTA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 344; Mature: 344

Protein sequence:

>344_residues
MDWSALPYARALSPGGPGSALPAAARTASQLVLDPDLAAELISEAYLPVRVRPQHAGTDFQMQMAVLLVGTMTAGVLTVA
ASSRITAEETEQFHLNVTLRGHAVSRRRGAGRIVTDAGGGVLFDPGQDADILWSDDCSQLCLMIPRETLESEIAALLGRT
VSKPLAFTPHLRLDSLAGRLLAPLVQVLVSELHGPSAVQRFPSVGRHLEGLVLDALLLGQRHNYTDLLDRPSSAARTPIQ
HAVELIHSRPEHPWTTVGLAQEVHLSVRALQEGFRRHHDLPPMAYLREVRLLRAHRLLLGADPDGLQVQDVAAGLGFKHH
GRFSTLYRERFGEPPSATLSRSPS

Sequences:

>Translated_344_residues
MDWSALPYARALSPGGPGSALPAAARTASQLVLDPDLAAELISEAYLPVRVRPQHAGTDFQMQMAVLLVGTMTAGVLTVA
ASSRITAEETEQFHLNVTLRGHAVSRRRGAGRIVTDAGGGVLFDPGQDADILWSDDCSQLCLMIPRETLESEIAALLGRT
VSKPLAFTPHLRLDSLAGRLLAPLVQVLVSELHGPSAVQRFPSVGRHLEGLVLDALLLGQRHNYTDLLDRPSSAARTPIQ
HAVELIHSRPEHPWTTVGLAQEVHLSVRALQEGFRRHHDLPPMAYLREVRLLRAHRLLLGADPDGLQVQDVAAGLGFKHH
GRFSTLYRERFGEPPSATLSRSPS
>Mature_344_residues
MDWSALPYARALSPGGPGSALPAAARTASQLVLDPDLAAELISEAYLPVRVRPQHAGTDFQMQMAVLLVGTMTAGVLTVA
ASSRITAEETEQFHLNVTLRGHAVSRRRGAGRIVTDAGGGVLFDPGQDADILWSDDCSQLCLMIPRETLESEIAALLGRT
VSKPLAFTPHLRLDSLAGRLLAPLVQVLVSELHGPSAVQRFPSVGRHLEGLVLDALLLGQRHNYTDLLDRPSSAARTPIQ
HAVELIHSRPEHPWTTVGLAQEVHLSVRALQEGFRRHHDLPPMAYLREVRLLRAHRLLLGADPDGLQVQDVAAGLGFKHH
GRFSTLYRERFGEPPSATLSRSPS

Specific function: Probably involved in the positive regulation of the thc operon for the degradation of the thiocarbamate herbicide EPTC [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 37328; Mature: 37328

Theoretical pI: Translated: 7.31; Mature: 7.31

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDWSALPYARALSPGGPGSALPAAARTASQLVLDPDLAAELISEAYLPVRVRPQHAGTDF
CCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHEECHHHHHHHHHHCCCCEEECCCCCCCCH
QMQMAVLLVGTMTAGVLTVAASSRITAEETEQFHLNVTLRGHAVSRRRGAGRIVTDAGGG
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEECCHHHHCCCCCEEEEECCCC
VLFDPGQDADILWSDDCSQLCLMIPRETLESEIAALLGRTVSKPLAFTPHLRLDSLAGRL
EEECCCCCCCEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
LAPLVQVLVSELHGPSAVQRFPSVGRHLEGLVLDALLLGQRHNYTDLLDRPSSAARTPIQ
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCHHHCCHHH
HAVELIHSRPEHPWTTVGLAQEVHLSVRALQEGFRRHHDLPPMAYLREVRLLRAHRLLLG
HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC
ADPDGLQVQDVAAGLGFKHHGRFSTLYRERFGEPPSATLSRSPS
CCCCCCCHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MDWSALPYARALSPGGPGSALPAAARTASQLVLDPDLAAELISEAYLPVRVRPQHAGTDF
CCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHEECHHHHHHHHHHCCCCEEECCCCCCCCH
QMQMAVLLVGTMTAGVLTVAASSRITAEETEQFHLNVTLRGHAVSRRRGAGRIVTDAGGG
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEECCHHHHCCCCCEEEEECCCC
VLFDPGQDADILWSDDCSQLCLMIPRETLESEIAALLGRTVSKPLAFTPHLRLDSLAGRL
EEECCCCCCCEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
LAPLVQVLVSELHGPSAVQRFPSVGRHLEGLVLDALLLGQRHNYTDLLDRPSSAARTPIQ
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCHHHCCHHH
HAVELIHSRPEHPWTTVGLAQEVHLSVRALQEGFRRHHDLPPMAYLREVRLLRAHRLLLG
HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC
ADPDGLQVQDVAAGLGFKHHGRFSTLYRERFGEPPSATLSRSPS
CCCCCCCHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7836301 [H]