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The map label for this gene is pep1A [H]

Identifier: 119716043

GI number: 119716043

Start: 1923920

End: 1925932

Strand: Reverse

Name: pep1A [H]

Synonym: Noca_1809

Alternate gene names: 119716043

Gene position: 1925932-1923920 (Counterclockwise)

Preceding gene: 119716044

Following gene: 119716042

Centisome position: 38.63

GC content: 70.34

Gene sequence:

>2013_bases
ATGGTCGGACGCATCCCCGTCATGAACGTCACGCCACTGGTCGACCTCGGCCGGCAACCAGCGAAGGCCACGGTCGGAGA
GCCCTTCCCGGTGACCGCGACGATCTTCCGCGAGGGCCACGACAAGCTGGGCGCCGAGGTGGTGCTCACCGGTCCCGACG
GCCGCCGCCGGGCGCCGGTCCGGATGACCAAGCACGCGACGGTCCCGGACCACTACGAGGCCTGGGTGACCCCCGACACG
GGCGGCGCCTGGAGCTTCGAGGTGATGGCCTGGTCCGACCCGCTCGCGACCTGGCAGCACAACGCCGCGCTCAAGGTCCC
GGCCGGCGTCGACGTCGACCTGATGTTCACCGAGGCCCGGATCCTGCTCGAGAAGGTGATCGCCTCGCTCGACCCCCGCG
ACCCGCCCGCGGCCGACGCCGCCCAGGTCCTCCAGGGTGCCCTGGACACGGCCACCGACACCAAGCGGCCACCGGCCGCC
CGGCTGGCCGTGCTCGAGGCCCCCGACGTCACCGGCGTGCTCGCCACCCACCCGATCCGCGAGCTGGTCACGGTCGAGGG
CCCCTACCCGGCGTACGCCGACCGGCCGAAGGCGCTCACCAGCAGCTGGTACGAGTTCTTCCCGCGCTCGGAGGGCGCCA
CCAAGGACCTGAAGACCGGCAAGGTCACCAGCGGCACATTCGCGACCGCCGCCAAGCGCCTGGACGCCGTGGCGGCGATG
GGGTTCGACGTCATCTACCTGCCGCCGATCCACCCGATCGGCGAGGTCAACCGCAAGGGCCCGAACAACACCGTCGACCC
CGGTCCCGACGCAGCACCGAAGGACTGGGCGGGGTCGCCGTGGGCGATCGGCTCCAAGGACGGCGGCCACGACGCGATCC
ACCCCGACCTCGGCACCTTCGACGACTTCGACGTGTTCGTCGCGAAGGCCCGGTCCCTCGACCTCGAGGTCGCGCTCGAC
CTCGCACTCCAGGCGGCGCCCGACCACCCGTGGGTGACCACCCACCCGGAGTGGTTCACGACCCGCGCCGACGGCACCAT
CGCGTACGCCGAGAACCCGCCGAAGAAGTACCAGGACATCTACCCGATCAACTTCGACAACGACCCGACCGGCATCTGCC
AGGAGGTGCTGCGGATCGTCCGGCTGTGGATGTCGCACGGCGTGCGCATCTTCCGGGTCGACAACCCGCACACCAAGCCG
GTGGCGTTCTGGGAGTGGCTGCTCAAGGAGATCCGGCGCACCGACCCCGACGTGATCTTCCTGGCCGAGGCGTTCACCCG
GCCGGCGATGATGCGCGGCCTCGGCGCGATCGGCTTCCACCAGTCCTACACGTACTTCACCTGGCGCAACGCGAAGTGGG
AGCTCGAGGAGTACCTCCGCGAGCTGTCCCGCGAGACCGACCACCTGATGCGGCCGAACTTCTTCGTGAACACGCCGGAC
ATCCTGCACGCCTACCTGCAGTACGGCGGGCCCGCGGCGTTCAAGATCCGCGCCGCGATTGCCGCGACCGGGTCGCCCAG
CTGGGGCGTCTACGCCGGCTACGAGCTGTACGAGCACGTCGCGGTCCGCCCCGGCAGCGAGGAGTACCTCGACTCGGAGA
AGTACCAGATCCGGATCCGCGACTGGGACGCCGCCGAGCGCGAGCACCGCACGCTCGCGCCGTACCTGACGCGCCTCAAC
GAGATCCGCCGCCGGCACCCGGCGCTCCAGCTGCTGCGCAACGTGTCGATCCACTGGAGCGACGACGAGAACATCCTGGT
GTTCAGCAAGCGGCGGGCGCTCCCCGACGGCCCCGACGATGTCGTGATCGTGGTCGTCAACGTCGACCCGCACGCAGCTC
GCGAGACCACGGTCCACCTCGACCTGGGCGCACTCGGGCTGTCGCCGACCGACTCGTTCCTGGTGCACGACGAGATCACC
GGCGCCGACTGGAGCTGGGGCGAGCACAACTACGTGCGGCTCGACCCGTACCACGAGCCGGCGCACATCTTGAGCGTGAG
GAGGCCCCGGTGA

Upstream 100 bases:

>100_bases
GCCGACGACTCGGCGTTTCCGGCTGGCCCGCCGGGGTACGGCGTCCAGGACGGCAGTTGCCCCTGCCGGACCTGCCCGGA
CCCTCGCTAGGTTGGAGATC

Downstream 100 bases:

>100_bases
CCCAGGGGCTCACGCCGGACCCTCCTGAGAACAACCCCGACTGGTTCAAGAGCGCGGTCTTCTACGAGGTCCTCGTCCGG
TCCTTCCGCGACTCCAACGC

Product: alpha amylase catalytic subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 670; Mature: 670

Protein sequence:

>670_residues
MVGRIPVMNVTPLVDLGRQPAKATVGEPFPVTATIFREGHDKLGAEVVLTGPDGRRRAPVRMTKHATVPDHYEAWVTPDT
GGAWSFEVMAWSDPLATWQHNAALKVPAGVDVDLMFTEARILLEKVIASLDPRDPPAADAAQVLQGALDTATDTKRPPAA
RLAVLEAPDVTGVLATHPIRELVTVEGPYPAYADRPKALTSSWYEFFPRSEGATKDLKTGKVTSGTFATAAKRLDAVAAM
GFDVIYLPPIHPIGEVNRKGPNNTVDPGPDAAPKDWAGSPWAIGSKDGGHDAIHPDLGTFDDFDVFVAKARSLDLEVALD
LALQAAPDHPWVTTHPEWFTTRADGTIAYAENPPKKYQDIYPINFDNDPTGICQEVLRIVRLWMSHGVRIFRVDNPHTKP
VAFWEWLLKEIRRTDPDVIFLAEAFTRPAMMRGLGAIGFHQSYTYFTWRNAKWELEEYLRELSRETDHLMRPNFFVNTPD
ILHAYLQYGGPAAFKIRAAIAATGSPSWGVYAGYELYEHVAVRPGSEEYLDSEKYQIRIRDWDAAEREHRTLAPYLTRLN
EIRRRHPALQLLRNVSIHWSDDENILVFSKRRALPDGPDDVVIVVVNVDPHAARETTVHLDLGALGLSPTDSFLVHDEIT
GADWSWGEHNYVRLDPYHEPAHILSVRRPR

Sequences:

>Translated_670_residues
MVGRIPVMNVTPLVDLGRQPAKATVGEPFPVTATIFREGHDKLGAEVVLTGPDGRRRAPVRMTKHATVPDHYEAWVTPDT
GGAWSFEVMAWSDPLATWQHNAALKVPAGVDVDLMFTEARILLEKVIASLDPRDPPAADAAQVLQGALDTATDTKRPPAA
RLAVLEAPDVTGVLATHPIRELVTVEGPYPAYADRPKALTSSWYEFFPRSEGATKDLKTGKVTSGTFATAAKRLDAVAAM
GFDVIYLPPIHPIGEVNRKGPNNTVDPGPDAAPKDWAGSPWAIGSKDGGHDAIHPDLGTFDDFDVFVAKARSLDLEVALD
LALQAAPDHPWVTTHPEWFTTRADGTIAYAENPPKKYQDIYPINFDNDPTGICQEVLRIVRLWMSHGVRIFRVDNPHTKP
VAFWEWLLKEIRRTDPDVIFLAEAFTRPAMMRGLGAIGFHQSYTYFTWRNAKWELEEYLRELSRETDHLMRPNFFVNTPD
ILHAYLQYGGPAAFKIRAAIAATGSPSWGVYAGYELYEHVAVRPGSEEYLDSEKYQIRIRDWDAAEREHRTLAPYLTRLN
EIRRRHPALQLLRNVSIHWSDDENILVFSKRRALPDGPDDVVIVVVNVDPHAARETTVHLDLGALGLSPTDSFLVHDEIT
GADWSWGEHNYVRLDPYHEPAHILSVRRPR
>Mature_670_residues
MVGRIPVMNVTPLVDLGRQPAKATVGEPFPVTATIFREGHDKLGAEVVLTGPDGRRRAPVRMTKHATVPDHYEAWVTPDT
GGAWSFEVMAWSDPLATWQHNAALKVPAGVDVDLMFTEARILLEKVIASLDPRDPPAADAAQVLQGALDTATDTKRPPAA
RLAVLEAPDVTGVLATHPIRELVTVEGPYPAYADRPKALTSSWYEFFPRSEGATKDLKTGKVTSGTFATAAKRLDAVAAM
GFDVIYLPPIHPIGEVNRKGPNNTVDPGPDAAPKDWAGSPWAIGSKDGGHDAIHPDLGTFDDFDVFVAKARSLDLEVALD
LALQAAPDHPWVTTHPEWFTTRADGTIAYAENPPKKYQDIYPINFDNDPTGICQEVLRIVRLWMSHGVRIFRVDNPHTKP
VAFWEWLLKEIRRTDPDVIFLAEAFTRPAMMRGLGAIGFHQSYTYFTWRNAKWELEEYLRELSRETDHLMRPNFFVNTPD
ILHAYLQYGGPAAFKIRAAIAATGSPSWGVYAGYELYEHVAVRPGSEEYLDSEKYQIRIRDWDAAEREHRTLAPYLTRLN
EIRRRHPALQLLRNVSIHWSDDENILVFSKRRALPDGPDDVVIVVVNVDPHAARETTVHLDLGALGLSPTDSFLVHDEIT
GADWSWGEHNYVRLDPYHEPAHILSVRRPR

Specific function: Could convert glycogen into units that may be subsequently converted into trehalose [H]

COG id: COG0366

COG function: function code G; Glycosidases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 13 family. GlgE subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021828
- InterPro:   IPR013780
- InterPro:   IPR006047
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF00128 Alpha-amylase; PF11896 DUF3416 [H]

EC number: NA

Molecular weight: Translated: 74837; Mature: 74837

Theoretical pI: Translated: 5.99; Mature: 5.99

Prosite motif: PS00019 ACTININ_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVGRIPVMNVTPLVDLGRQPAKATVGEPFPVTATIFREGHDKLGAEVVLTGPDGRRRAPV
CCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEECCCCCCCCCE
RMTKHATVPDHYEAWVTPDTGGAWSFEVMAWSDPLATWQHNAALKVPAGVDVDLMFTEAR
EEEECCCCCCCCEEEECCCCCCCEEEEEEEECCCCHHCCCCCEEECCCCCCEEEEHHHHH
ILLEKVIASLDPRDPPAADAAQVLQGALDTATDTKRPPAARLAVLEAPDVTGVLATHPIR
HHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCHHHHCCCH
ELVTVEGPYPAYADRPKALTSSWYEFFPRSEGATKDLKTGKVTSGTFATAAKRLDAVAAM
HHEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
GFDVIYLPPIHPIGEVNRKGPNNTVDPGPDAAPKDWAGSPWAIGSKDGGHDAIHPDLGTF
CCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
DDFDVFVAKARSLDLEVALDLALQAAPDHPWVTTHPEWFTTRADGTIAYAENPPKKYQDI
CCHHHHHHHHHCCCEEEEEEEHEECCCCCCEECCCCCEEEEECCCEEEECCCCCHHHCCC
YPINFDNDPTGICQEVLRIVRLWMSHGVRIFRVDNPHTKPVAFWEWLLKEIRRTDPDVIF
CCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEE
LAEAFTRPAMMRGLGAIGFHQSYTYFTWRNAKWELEEYLRELSRETDHLMRPNFFVNTPD
EEHHHCCHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEECCHH
ILHAYLQYGGPAAFKIRAAIAATGSPSWGVYAGYELYEHVAVRPGSEEYLDSEKYQIRIR
HHHHHHHHCCCEEEEEEEEEEECCCCCCCEEECHHHHHHHHCCCCCHHHCCCCEEEEEEE
DWDAAEREHRTLAPYLTRLNEIRRRHPALQLLRNVSIHWSDDENILVFSKRRALPDGPDD
CCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCEEEECCCCCEEEEECCCCCCCCCCC
VVIVVVNVDPHAARETTVHLDLGALGLSPTDSFLVHDEITGADWSWGEHNYVRLDPYHEP
EEEEEEECCCCCCCCEEEEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCEEEECCCCCC
AHILSVRRPR
HHHHEECCCC
>Mature Secondary Structure
MVGRIPVMNVTPLVDLGRQPAKATVGEPFPVTATIFREGHDKLGAEVVLTGPDGRRRAPV
CCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEECCCCCCCCCE
RMTKHATVPDHYEAWVTPDTGGAWSFEVMAWSDPLATWQHNAALKVPAGVDVDLMFTEAR
EEEECCCCCCCCEEEECCCCCCCEEEEEEEECCCCHHCCCCCEEECCCCCCEEEEHHHHH
ILLEKVIASLDPRDPPAADAAQVLQGALDTATDTKRPPAARLAVLEAPDVTGVLATHPIR
HHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCHHHHCCCH
ELVTVEGPYPAYADRPKALTSSWYEFFPRSEGATKDLKTGKVTSGTFATAAKRLDAVAAM
HHEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
GFDVIYLPPIHPIGEVNRKGPNNTVDPGPDAAPKDWAGSPWAIGSKDGGHDAIHPDLGTF
CCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
DDFDVFVAKARSLDLEVALDLALQAAPDHPWVTTHPEWFTTRADGTIAYAENPPKKYQDI
CCHHHHHHHHHCCCEEEEEEEHEECCCCCCEECCCCCEEEEECCCEEEECCCCCHHHCCC
YPINFDNDPTGICQEVLRIVRLWMSHGVRIFRVDNPHTKPVAFWEWLLKEIRRTDPDVIF
CCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEE
LAEAFTRPAMMRGLGAIGFHQSYTYFTWRNAKWELEEYLRELSRETDHLMRPNFFVNTPD
EEHHHCCHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEECCHH
ILHAYLQYGGPAAFKIRAAIAATGSPSWGVYAGYELYEHVAVRPGSEEYLDSEKYQIRIR
HHHHHHHHCCCEEEEEEEEEEECCCCCCCEEECHHHHHHHHCCCCCHHHCCCCEEEEEEE
DWDAAEREHRTLAPYLTRLNEIRRRHPALQLLRNVSIHWSDDENILVFSKRRALPDGPDD
CCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCEEEECCCCCEEEEECCCCCCCCCCC
VVIVVVNVDPHAARETTVHLDLGALGLSPTDSFLVHDEITGADWSWGEHNYVRLDPYHEP
EEEEEEECCCCCCCCEEEEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCEEEECCCCCC
AHILSVRRPR
HHHHEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10821190; 12000953 [H]