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The map label for this gene is glgB [H]

Identifier: 119716040

GI number: 119716040

Start: 1918499

End: 1920748

Strand: Reverse

Name: glgB [H]

Synonym: Noca_1806

Alternate gene names: 119716040

Gene position: 1920748-1918499 (Counterclockwise)

Preceding gene: 119716041

Following gene: 119716039

Centisome position: 38.52

GC content: 71.78

Gene sequence:

>2250_bases
ATGAGCGACAAGTCCACCCCCCGGACCACCTCCGAGCCGGCCCCGGCGAGCGGCCCCGCGCTGCATCCGGTGTCGACCGC
CGAGCTGCACCAGGTCGCGCACGGCGAGCACGGCAACCCGCACGGCGTGCTCGGCCCCCATCCGCACGACGGCGGCGTCA
CCGTGCGGGTGCTCCGGCCCCTGGCCTCCCGTGTCGTCGTGCGGTGGAGCGACGGGTCCGGCACCTCCGGCGAGGCCGAG
CTGGCCCACGAGCACGAGGGCATCTGGGCGGGCGTGATCGCGCTGCCCGACGTGCCCGACTACCGGGTGGCGGTCAGCTA
CGGCCCCGACGAGCACGTGGTCGACGACCCCTATCGCTTCTTGCCGACTCTCGGCGAGATGGATCTGCACCTGATCAACG
AGGGCCGCCACGAGCTGCTCTGGACCGTGCTCGGCGCCCGGGTGCACCGCTATCCGGGCGCGCTCGGGCCGGTGACCGGC
ACGTCGTTCGCGGTGTGGGCGCCCTCGGCGCGGGCGATCCGGATCAAGGCCGACTTCAACAGCTGGGACGGGCGCGAGCA
CCCGATGCGCCAGCTCGGGACCTCCGGTGTGTGGGAGCTGTTCGTGCCGGACGTCGGCGCCGGGACGTCGTACAAGTACA
CGATCCTGGGCCCGGACGGGCAGTGGCGCGAGAAGGCCGACCCGATGGCCCGCTGGGCCGAGAAGCCCGCCGACACGGCC
TCGCGGGTCTTCGAGTCCGGCTACACCTGGAACGACGACGTCTGGCTCGAGGCCCGGGCGCGCCGCGCGCCGGTCGCCTC
CCCGATGAGCATCTACGAGATGCACCTCGGGTCCTGGAAGAAGCACCCCGACGGCCGGTACTGGTCCTGGGCCGAGCTCG
CCGAGGAGCTGCCGGCGTACGTCGCGGGCCTGGGCTTCACCCACGTCGAGCTGATGCCGGTGATGCAGCACCCGTTCGGC
GGCTCGTGGGGCTACCACGTGACGTCGTACTTCGCCCCGGACGCGCGGTTCGGCGACCCCGACGGCTTCCGGCTGCTCGT
CGACCGGCTGCACCAGGCCGGCGTCGGCGTGATCCTGGACTGGGTGCCCGGGCACTTCGCCACCGACGAGTGGGCGCTGG
CCCGCTTCGACGGCACGCCGCTCTACGAGGATCCCAACCCCCAGCGCGGCTGGCACAAGGAGTGGGGCTCGCACATCTTC
AACTTCGGGCGCCGCGAGGTCCGCAACTTCCTCTACGCGAACGCGCTGTACTGGCTCGAGGAGTTCCACGCCGACGGCCT
GCGGGTCGACGGCGTCGCGTCGATGCTCTACCTGGACTACGCCCGCGAGCCCGGGGAGTGGACGCCCAACATCCACGGCG
GCCACGAGAACCTCGAGGCGGTGCAGTTCCTCCAGGAGATGAACGCCACCGTCTACAAGCGGGTCCCGGGCATCACCACG
ATCGCCGAGGAGTCGACGTCCTGGCCCGGCGTGACCAGGCCGACCTCGGCCGACGGGCTGGGGTTCGGCTTCAAGTGGAA
CATGGGCTGGATGCACGACACGCTGGACTACCTCGCCCGCGAGCCGGTGCACCGGGCCTACCACCACGGGGAGATGACGT
TCTCGCTCGTCTACGCCTGGTCGGAGAACTACGTGCTGCCGATCAGCCACGACGAGGTCGTCCACGGCAAGGGCTCGCTG
CTGCGCAAGATGCCCGGCGACCGCTGGCAGCAGCTGGCCAACCTGCGCGCCTACCTCGGCTTCATGTGGGCCCACCCCGG
CAAGCAGCTGCTGTTCATGGGCGCCGAGCTCGGCCAGGAGTCGGAGTGGGCGGAGTCGCGCGAGCTGGACTGGTGGCTGC
TCGACCACCCCGAGCACCGCGGCGTGCAGGCCCTGGTGCGCGACCTGAACGCGACGTACGTCGACTCCCCGGCGTTGTGG
GCCCGCGACCACGAGCCCGAGGGCTTCACCTGGATCGACGCCAACGACGCCGGCCGCAACGTCTTCTCGTTCGTCCGGCG
CGGCGGCGACGCCGACCTGGTGTGCGTGTCGAACTTCGCGGCCGTCCCCCACGACGACTACCGGCTGGGGCTGCCCGCCG
CCGGCGTGTGGGACGAGGTGCTCAACACCGACGCGGAGACCTACAGCGGCTCCGGGGTCGGCAACCTCGGCTCGGTCACC
GCGGTCGAGGGCGAGTGGTCGGGCCAGCCCGCCCACGCCACCCTCGTGGTGCCGCCGCTGGCGACGGTGTGGTTGCGCCG
ACGACACTAG

Upstream 100 bases:

>100_bases
ATGTCGTGGACAAGGCGGTGTACGAGACCGTGTACGAGACACGAAACCGTCCGACCTGGGTGGCCATCCCGCTCGAGGCC
GTGGCGAGGATCGGAGCGGC

Downstream 100 bases:

>100_bases
AGTCTCCCCGTGACCGAGCCGACGACAGCCGTGACCACCGTCGCGGAGGGGATCGCCCGGATCTCCTGGGCGCCCGACCA
GCCGGTCGACGTCGTCCGGC

Product: glycogen branching enzyme

Products: NA

Alternate protein names: 1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase; Glycogen-branching enzyme; BE [H]

Number of amino acids: Translated: 749; Mature: 748

Protein sequence:

>749_residues
MSDKSTPRTTSEPAPASGPALHPVSTAELHQVAHGEHGNPHGVLGPHPHDGGVTVRVLRPLASRVVVRWSDGSGTSGEAE
LAHEHEGIWAGVIALPDVPDYRVAVSYGPDEHVVDDPYRFLPTLGEMDLHLINEGRHELLWTVLGARVHRYPGALGPVTG
TSFAVWAPSARAIRIKADFNSWDGREHPMRQLGTSGVWELFVPDVGAGTSYKYTILGPDGQWREKADPMARWAEKPADTA
SRVFESGYTWNDDVWLEARARRAPVASPMSIYEMHLGSWKKHPDGRYWSWAELAEELPAYVAGLGFTHVELMPVMQHPFG
GSWGYHVTSYFAPDARFGDPDGFRLLVDRLHQAGVGVILDWVPGHFATDEWALARFDGTPLYEDPNPQRGWHKEWGSHIF
NFGRREVRNFLYANALYWLEEFHADGLRVDGVASMLYLDYAREPGEWTPNIHGGHENLEAVQFLQEMNATVYKRVPGITT
IAEESTSWPGVTRPTSADGLGFGFKWNMGWMHDTLDYLAREPVHRAYHHGEMTFSLVYAWSENYVLPISHDEVVHGKGSL
LRKMPGDRWQQLANLRAYLGFMWAHPGKQLLFMGAELGQESEWAESRELDWWLLDHPEHRGVQALVRDLNATYVDSPALW
ARDHEPEGFTWIDANDAGRNVFSFVRRGGDADLVCVSNFAAVPHDDYRLGLPAAGVWDEVLNTDAETYSGSGVGNLGSVT
AVEGEWSGQPAHATLVVPPLATVWLRRRH

Sequences:

>Translated_749_residues
MSDKSTPRTTSEPAPASGPALHPVSTAELHQVAHGEHGNPHGVLGPHPHDGGVTVRVLRPLASRVVVRWSDGSGTSGEAE
LAHEHEGIWAGVIALPDVPDYRVAVSYGPDEHVVDDPYRFLPTLGEMDLHLINEGRHELLWTVLGARVHRYPGALGPVTG
TSFAVWAPSARAIRIKADFNSWDGREHPMRQLGTSGVWELFVPDVGAGTSYKYTILGPDGQWREKADPMARWAEKPADTA
SRVFESGYTWNDDVWLEARARRAPVASPMSIYEMHLGSWKKHPDGRYWSWAELAEELPAYVAGLGFTHVELMPVMQHPFG
GSWGYHVTSYFAPDARFGDPDGFRLLVDRLHQAGVGVILDWVPGHFATDEWALARFDGTPLYEDPNPQRGWHKEWGSHIF
NFGRREVRNFLYANALYWLEEFHADGLRVDGVASMLYLDYAREPGEWTPNIHGGHENLEAVQFLQEMNATVYKRVPGITT
IAEESTSWPGVTRPTSADGLGFGFKWNMGWMHDTLDYLAREPVHRAYHHGEMTFSLVYAWSENYVLPISHDEVVHGKGSL
LRKMPGDRWQQLANLRAYLGFMWAHPGKQLLFMGAELGQESEWAESRELDWWLLDHPEHRGVQALVRDLNATYVDSPALW
ARDHEPEGFTWIDANDAGRNVFSFVRRGGDADLVCVSNFAAVPHDDYRLGLPAAGVWDEVLNTDAETYSGSGVGNLGSVT
AVEGEWSGQPAHATLVVPPLATVWLRRRH
>Mature_748_residues
SDKSTPRTTSEPAPASGPALHPVSTAELHQVAHGEHGNPHGVLGPHPHDGGVTVRVLRPLASRVVVRWSDGSGTSGEAEL
AHEHEGIWAGVIALPDVPDYRVAVSYGPDEHVVDDPYRFLPTLGEMDLHLINEGRHELLWTVLGARVHRYPGALGPVTGT
SFAVWAPSARAIRIKADFNSWDGREHPMRQLGTSGVWELFVPDVGAGTSYKYTILGPDGQWREKADPMARWAEKPADTAS
RVFESGYTWNDDVWLEARARRAPVASPMSIYEMHLGSWKKHPDGRYWSWAELAEELPAYVAGLGFTHVELMPVMQHPFGG
SWGYHVTSYFAPDARFGDPDGFRLLVDRLHQAGVGVILDWVPGHFATDEWALARFDGTPLYEDPNPQRGWHKEWGSHIFN
FGRREVRNFLYANALYWLEEFHADGLRVDGVASMLYLDYAREPGEWTPNIHGGHENLEAVQFLQEMNATVYKRVPGITTI
AEESTSWPGVTRPTSADGLGFGFKWNMGWMHDTLDYLAREPVHRAYHHGEMTFSLVYAWSENYVLPISHDEVVHGKGSLL
RKMPGDRWQQLANLRAYLGFMWAHPGKQLLFMGAELGQESEWAESRELDWWLLDHPEHRGVQALVRDLNATYVDSPALWA
RDHEPEGFTWIDANDAGRNVFSFVRRGGDADLVCVSNFAAVPHDDYRLGLPAAGVWDEVLNTDAETYSGSGVGNLGSVTA
VEGEWSGQPAHATLVVPPLATVWLRRRH

Specific function: Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position [H]

COG id: COG0296

COG function: function code G; 1,4-alpha-glucan branching enzyme

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 13 family [H]

Homologues:

Organism=Homo sapiens, GI189458812, Length=637, Percent_Identity=25.9026687598116, Blast_Score=178, Evalue=2e-44,
Organism=Escherichia coli, GI1789839, Length=724, Percent_Identity=48.3425414364641, Blast_Score=673, Evalue=0.0,
Organism=Caenorhabditis elegans, GI17554896, Length=353, Percent_Identity=28.328611898017, Blast_Score=162, Evalue=5e-40,
Organism=Caenorhabditis elegans, GI32564391, Length=288, Percent_Identity=29.1666666666667, Blast_Score=146, Evalue=3e-35,
Organism=Saccharomyces cerevisiae, GI6320826, Length=656, Percent_Identity=25.4573170731707, Blast_Score=175, Evalue=2e-44,
Organism=Drosophila melanogaster, GI28573410, Length=595, Percent_Identity=27.3949579831933, Blast_Score=179, Evalue=7e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006407
- InterPro:   IPR006048
- InterPro:   IPR013780
- InterPro:   IPR006047
- InterPro:   IPR004193
- InterPro:   IPR017853
- InterPro:   IPR013781
- InterPro:   IPR013783
- InterPro:   IPR014756 [H]

Pfam domain/function: PF00128 Alpha-amylase; PF02806 Alpha-amylase_C; PF02922 CBM_48 [H]

EC number: =2.4.1.18 [H]

Molecular weight: Translated: 83733; Mature: 83602

Theoretical pI: Translated: 5.68; Mature: 5.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDKSTPRTTSEPAPASGPALHPVSTAELHQVAHGEHGNPHGVLGPHPHDGGVTVRVLRP
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEHHHHH
LASRVVVRWSDGSGTSGEAELAHEHEGIWAGVIALPDVPDYRVAVSYGPDEHVVDDPYRF
HHCCEEEEECCCCCCCCCCHHHHHCCCEEEEEEECCCCCCEEEEEEECCCCCCCCCCHHH
LPTLGEMDLHLINEGRHELLWTVLGARVHRYPGALGPVTGTSFAVWAPSARAIRIKADFN
HCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCEEEEEEECCC
SWDGREHPMRQLGTSGVWELFVPDVGAGTSYKYTILGPDGQWREKADPMARWAEKPADTA
CCCCCCCHHHHHCCCCEEEEECCCCCCCCCEEEEEECCCCCCHHHCCHHHHHHCCCCHHH
SRVFESGYTWNDDVWLEARARRAPVASPMSIYEMHLGSWKKHPDGRYWSWAELAEELPAY
HHHHHCCCCCCCCEEEEEHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
VAGLGFTHVELMPVMQHPFGGSWGYHVTSYFAPDARFGDPDGFRLLVDRLHQAGVGVILD
HHHCCCHHEEEEHHHCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCEEEEE
WVPGHFATDEWALARFDGTPLYEDPNPQRGWHKEWGSHIFNFGRREVRNFLYANALYWLE
CCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EFHADGLRVDGVASMLYLDYAREPGEWTPNIHGGHENLEAVQFLQEMNATVYKRVPGITT
HHCCCCEEEHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHCCCCEE
IAEESTSWPGVTRPTSADGLGFGFKWNMGWMHDTLDYLAREPVHRAYHHGEMTFSLVYAW
ECCCCCCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEE
SENYVLPISHDEVVHGKGSLLRKMPGDRWQQLANLRAYLGFMWAHPGKQLLFMGAELGQE
CCCEEEECCCCCEECCCHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHCCCC
SEWAESRELDWWLLDHPEHRGVQALVRDLNATYVDSPALWARDHEPEGFTWIDANDAGRN
CHHHHHCCCCEEEECCCCCCCHHHHHHHCCCCEECCCCCCCCCCCCCCEEEEECCCCCHH
VFSFVRRGGDADLVCVSNFAAVPHDDYRLGLPAAGVWDEVLNTDAETYSGSGVGNLGSVT
HHHHHHCCCCCCEEEEECCCCCCCCCCEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCEE
AVEGEWSGQPAHATLVVPPLATVWLRRRH
EECCCCCCCCCEEEEEECCHHHHHHHCCC
>Mature Secondary Structure 
SDKSTPRTTSEPAPASGPALHPVSTAELHQVAHGEHGNPHGVLGPHPHDGGVTVRVLRP
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEHHHHH
LASRVVVRWSDGSGTSGEAELAHEHEGIWAGVIALPDVPDYRVAVSYGPDEHVVDDPYRF
HHCCEEEEECCCCCCCCCCHHHHHCCCEEEEEEECCCCCCEEEEEEECCCCCCCCCCHHH
LPTLGEMDLHLINEGRHELLWTVLGARVHRYPGALGPVTGTSFAVWAPSARAIRIKADFN
HCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCEEEEEEECCC
SWDGREHPMRQLGTSGVWELFVPDVGAGTSYKYTILGPDGQWREKADPMARWAEKPADTA
CCCCCCCHHHHHCCCCEEEEECCCCCCCCCEEEEEECCCCCCHHHCCHHHHHHCCCCHHH
SRVFESGYTWNDDVWLEARARRAPVASPMSIYEMHLGSWKKHPDGRYWSWAELAEELPAY
HHHHHCCCCCCCCEEEEEHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
VAGLGFTHVELMPVMQHPFGGSWGYHVTSYFAPDARFGDPDGFRLLVDRLHQAGVGVILD
HHHCCCHHEEEEHHHCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCEEEEE
WVPGHFATDEWALARFDGTPLYEDPNPQRGWHKEWGSHIFNFGRREVRNFLYANALYWLE
CCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EFHADGLRVDGVASMLYLDYAREPGEWTPNIHGGHENLEAVQFLQEMNATVYKRVPGITT
HHCCCCEEEHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHCCCCEE
IAEESTSWPGVTRPTSADGLGFGFKWNMGWMHDTLDYLAREPVHRAYHHGEMTFSLVYAW
ECCCCCCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEE
SENYVLPISHDEVVHGKGSLLRKMPGDRWQQLANLRAYLGFMWAHPGKQLLFMGAELGQE
CCCEEEECCCCCEECCCHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHCCCC
SEWAESRELDWWLLDHPEHRGVQALVRDLNATYVDSPALWARDHEPEGFTWIDANDAGRN
CHHHHHCCCCEEEECCCCCCCHHHHHHHCCCCEECCCCCCCCCCCCCCEEEEECCCCCHH
VFSFVRRGGDADLVCVSNFAAVPHDDYRLGLPAAGVWDEVLNTDAETYSGSGVGNLGSVT
HHHHHHCCCCCCEEEEECCCCCCCCCCEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCEE
AVEGEWSGQPAHATLVVPPLATVWLRRRH
EECCCCCCCCCEEEEEECCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA