Click here to switch to the map view.

The map label for this gene is sodN [H]

Identifier: 119715960

GI number: 119715960

Start: 1834591

End: 1834992

Strand: Reverse

Name: sodN [H]

Synonym: Noca_1725

Alternate gene names: 119715960

Gene position: 1834992-1834591 (Counterclockwise)

Preceding gene: 119715965

Following gene: 119715957

Centisome position: 36.8

GC content: 65.17

Gene sequence:

>402_bases
ATGTTTGTGCGACTGTTCGCCCCCACCCTCGAGGTTTCCGCCCACTGCGATCTTCCCTGCGGCGTGTACGACCCCGCGCA
GGCGCGCATCGAGGCGGAGTCCATCAAGGCCATCATCGCCAAGGTCGCCGACAACGACGACCCGGACTTCCGCACCCGAG
CGATCCTCATCAAGGAGCAGCGCTCCGAGCTGGTCAAGCACCACCTCTGGGTGCTGTGGACCGACTACTTCAAGCCGCCG
CACTTCGAGAAGTACCCCCAGCTGCACACGCTCGTGAACGAGGCCACCAAGCTGGCCGGCGCCGCCGGCACGAAGGGTGA
GCTCGACGCCGGCAAGGCCGACGAGCTGCTCGCGAAGATCGACCAGATCGCCGAGATCTTCTGGGAGACCAAGAAGGCCT
GA

Upstream 100 bases:

>100_bases
GCCCGCGTTCCACGGCGGAAGACGCTCCTCGTCCTGCTCCTCGCACGCGGAGTAGTGTCGCAGTCGAACCCCACGGACAA
CCGAAGACGAGAGGATCCGC

Downstream 100 bases:

>100_bases
TTTCGCGCGCAGGCGACTGACCTGCGCGTTTACCCCTCCGGCGCCACCTCGGTCCGCACGGAGTCCGCACGGGCTCCGAG
CGGTCCGAGAGCGGCGTCGA

Product: superoxide dismutase

Products: NA

Alternate protein names: NiSOD; Nickel-containing superoxide dismutase [H]

Number of amino acids: Translated: 133; Mature: 133

Protein sequence:

>133_residues
MFVRLFAPTLEVSAHCDLPCGVYDPAQARIEAESIKAIIAKVADNDDPDFRTRAILIKEQRSELVKHHLWVLWTDYFKPP
HFEKYPQLHTLVNEATKLAGAAGTKGELDAGKADELLAKIDQIAEIFWETKKA

Sequences:

>Translated_133_residues
MFVRLFAPTLEVSAHCDLPCGVYDPAQARIEAESIKAIIAKVADNDDPDFRTRAILIKEQRSELVKHHLWVLWTDYFKPP
HFEKYPQLHTLVNEATKLAGAAGTKGELDAGKADELLAKIDQIAEIFWETKKA
>Mature_133_residues
MFVRLFAPTLEVSAHCDLPCGVYDPAQARIEAESIKAIIAKVADNDDPDFRTRAILIKEQRSELVKHHLWVLWTDYFKPP
HFEKYPQLHTLVNEATKLAGAAGTKGELDAGKADELLAKIDQIAEIFWETKKA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nickel superoxide dismutase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014123 [H]

Pfam domain/function: PF09055 Sod_Ni [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 15000; Mature: 15000

Theoretical pI: Translated: 6.01; Mature: 6.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFVRLFAPTLEVSAHCDLPCGVYDPAQARIEAESIKAIIAKVADNDDPDFRTRAILIKEQ
CEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
RSELVKHHLWVLWTDYFKPPHFEKYPQLHTLVNEATKLAGAAGTKGELDAGKADELLAKI
HHHHHHHHHHHEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
DQIAEIFWETKKA
HHHHHHHHHHCCC
>Mature Secondary Structure
MFVRLFAPTLEVSAHCDLPCGVYDPAQARIEAESIKAIIAKVADNDDPDFRTRAILIKEQ
CEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
RSELVKHHLWVLWTDYFKPPHFEKYPQLHTLVNEATKLAGAAGTKGELDAGKADELLAKI
HHHHHHHHHHHEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
DQIAEIFWETKKA
HHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9466266; 12000953; 8836134; 8898904 [H]