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The map label for this gene is ybcJ [C]

Identifier: 119715928

GI number: 119715928

Start: 1800947

End: 1801201

Strand: Direct

Name: ybcJ [C]

Synonym: Noca_1693

Alternate gene names: 119715928

Gene position: 1800947-1801201 (Clockwise)

Preceding gene: 119715927

Following gene: 119715930

Centisome position: 36.12

GC content: 72.55

Gene sequence:

>255_bases
ATGGCCGAGCCGACACCCTTCGACGTACCGATCCGCGACGAGTCGATCCGGCTCGGCCAGTTCCTCAAGCTCGCGAACCT
GGTGGAGTCCGGCGCGGACGCCAAGCCGGTGATCGCCGACGGGCTGGTGCGGGTCAACGGCGAGGTCGAGACCCGCCGCG
GCCGCCAGCTCGTGGTGGGCGACGTGGTCACCCTCGGGCCCGCGGCCGCCCGCGTCTGTGACGCCGCCTCGTTCGAGGAC
CACCTGCCCTGGTGA

Upstream 100 bases:

>100_bases
GTGGGCCGCGACCTGCAGTTCATCCGGATCAACGGCACCATCGTCGGCGGCCTGGTGGGCGTGCTGATCCACGCCGTCAG
CGTGCTGGTTCACTGATCCC

Downstream 100 bases:

>100_bases
CCGTCGAGCCGGGACTTCTGCGCGTTGATTCGGGACCTGGGTGGTCGGATCTCCCGACTCGACCGACGGAAGTCCCGAAT
CGACGTCAGCTGACGGCGAG

Product: RNA-binding S4 domain-containing protein

Products: NA

Alternate protein names: S4 Domain Protein; Pseudouridylate Synthase

Number of amino acids: Translated: 84; Mature: 83

Protein sequence:

>84_residues
MAEPTPFDVPIRDESIRLGQFLKLANLVESGADAKPVIADGLVRVNGEVETRRGRQLVVGDVVTLGPAAARVCDAASFED
HLPW

Sequences:

>Translated_84_residues
MAEPTPFDVPIRDESIRLGQFLKLANLVESGADAKPVIADGLVRVNGEVETRRGRQLVVGDVVTLGPAAARVCDAASFED
HLPW
>Mature_83_residues
AEPTPFDVPIRDESIRLGQFLKLANLVESGADAKPVIADGLVRVNGEVETRRGRQLVVGDVVTLGPAAARVCDAASFEDH
LPW

Specific function: Unknown

COG id: COG2501

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 9024; Mature: 8893

Theoretical pI: Translated: 4.54; Mature: 4.54

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEPTPFDVPIRDESIRLGQFLKLANLVESGADAKPVIADGLVRVNGEVETRRGRQLVVG
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCEECCCCCEEEEC
DVVTLGPAAARVCDAASFEDHLPW
CEECCCHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
AEPTPFDVPIRDESIRLGQFLKLANLVESGADAKPVIADGLVRVNGEVETRRGRQLVVG
CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCEECCCCCEEEEC
DVVTLGPAAARVCDAASFEDHLPW
CEECCCHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA