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The map label for this gene is ribD [C]

Identifier: 119715918

GI number: 119715918

Start: 1790000

End: 1790695

Strand: Direct

Name: ribD [C]

Synonym: Noca_1683

Alternate gene names: 119715918

Gene position: 1790000-1790695 (Clockwise)

Preceding gene: 119715917

Following gene: 119715919

Centisome position: 35.9

GC content: 72.41

Gene sequence:

>696_bases
GTGCCTGACCGGCCCTACACGCTGCTGAGCTGCGGCATGTCGTTGGACGGCTACCTCGACAGCGCCTCGGACCAGCGGCT
GATCCTCTCCAACGACGCCGACCTCGACCGCGTGGACGCGGTCCGCGCCGAGTCCGACGCGATCATGGTCGGTGCCGCGA
CGGTGCGCAACGACAACCCAAGGCTGCTCGTGCGGGACCAGGAGCGCCGCGACGAGCGGGTGTCTCGAGGGTTGAAGCCC
TCACCGCTCAAGGTGACCGTCACCTGCGCGGGCCGGCTGGACCCGCGCGGCCGGTTCTTCACCACCGGCGAGTCCGAGAA
GCTCGTCTACTGCACCAGCGGGGGCGCGCCCGAGGCCCGGTCGCGGCTCGGCGCGGTCGCGACCGTCGTCGACGGCGGCC
CCCGGGTCACCATGCGCCGGATGAGCGAGGACCTGCACGAGCGGGGCGTGCGCCGGCTGATGGTCGAGGGCGGGGGGACC
ATCCACACGCAGTTCCTCACCGAGGACCTCGCCGACGAGCTGCACCTGGTCGTGGCGCCGTTCTTCGTCGGCGACTCCCG
CGCCCGCAGGTTCGTCGACGACGGCCCGTTCCCGTTCCGGTCAGACCGGCCGGCCCGCCTGGTCGACGTGCGCCGGATCG
GCGAGGTCGTGCTGCTGCGCTACGCGCTCTCCTCCAGGTTCGAGGACGCGTCGTGA

Upstream 100 bases:

>100_bases
GCCACCGTCGCGGTCGTGTACGGCGTCCTCGCGCTGGTCGCCACCCTCCCCGGCGCGGCACTGCTCGCCACAGGACTGCT
CACCAAGGGGGTGCTCGCCC

Downstream 100 bases:

>100_bases
CGGCCGCGGTCCGCACCGAGCTGATGGTCCCGCTGCGCCTCGCGGACGGCTGGTCCACGCTCGCGCGGCTCTACACCTTC
GACGGCCTCACCGACCCCGG

Product: deaminase-reductase domain-containing protein

Products: NA

Alternate protein names: HTP reductase [H]

Number of amino acids: Translated: 231; Mature: 230

Protein sequence:

>231_residues
MPDRPYTLLSCGMSLDGYLDSASDQRLILSNDADLDRVDAVRAESDAIMVGAATVRNDNPRLLVRDQERRDERVSRGLKP
SPLKVTVTCAGRLDPRGRFFTTGESEKLVYCTSGGAPEARSRLGAVATVVDGGPRVTMRRMSEDLHERGVRRLMVEGGGT
IHTQFLTEDLADELHLVVAPFFVGDSRARRFVDDGPFPFRSDRPARLVDVRRIGEVVLLRYALSSRFEDAS

Sequences:

>Translated_231_residues
MPDRPYTLLSCGMSLDGYLDSASDQRLILSNDADLDRVDAVRAESDAIMVGAATVRNDNPRLLVRDQERRDERVSRGLKP
SPLKVTVTCAGRLDPRGRFFTTGESEKLVYCTSGGAPEARSRLGAVATVVDGGPRVTMRRMSEDLHERGVRRLMVEGGGT
IHTQFLTEDLADELHLVVAPFFVGDSRARRFVDDGPFPFRSDRPARLVDVRRIGEVVLLRYALSSRFEDAS
>Mature_230_residues
PDRPYTLLSCGMSLDGYLDSASDQRLILSNDADLDRVDAVRAESDAIMVGAATVRNDNPRLLVRDQERRDERVSRGLKPS
PLKVTVTCAGRLDPRGRFFTTGESEKLVYCTSGGAPEARSRLGAVATVVDGGPRVTMRRMSEDLHERGVRRLMVEGGGTI
HTQFLTEDLADELHLVVAPFFVGDSRARRFVDDGPFPFRSDRPARLVDVRRIGEVVLLRYALSSRFEDAS

Specific function: Converts 2,5-Diamino-6-(Ribosylamino)-4(3h)-Pyrimidinone 5'-Phosphate Into 5-Amino-6-(Ribosylamino)-2,4(1h,3h)- Pyrimidinedione 5'-Phosphate. [C]

COG id: COG1985

COG function: function code H; Pyrimidine reductase, riboflavin biosynthesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the HTP reductase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006401
- InterPro:   IPR011549
- InterPro:   IPR002734 [H]

Pfam domain/function: PF01872 RibD_C [H]

EC number: =1.1.1.193 [H]

Molecular weight: Translated: 25609; Mature: 25478

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDRPYTLLSCGMSLDGYLDSASDQRLILSNDADLDRVDAVRAESDAIMVGAATVRNDNP
CCCCCEEEEECCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHCCCCEEEEEEEEEECCCC
RLLVRDQERRDERVSRGLKPSPLKVTVTCAGRLDPRGRFFTTGESEKLVYCTSGGAPEAR
EEEEECHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCEEECCCCCEEEEEECCCCHHHH
SRLGAVATVVDGGPRVTMRRMSEDLHERGVRRLMVEGGGTIHTQFLTEDLADELHLVVAP
HHHCEEEEEECCCCCHHHHHHHHHHHHHHHHEEEECCCCEEEHHHHHHHHHHHHEEEEEE
FFVGDSRARRFVDDGPFPFRSDRPARLVDVRRIGEVVLLRYALSSRFEDAS
EEECCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
PDRPYTLLSCGMSLDGYLDSASDQRLILSNDADLDRVDAVRAESDAIMVGAATVRNDNP
CCCCEEEEECCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHCCCCEEEEEEEEEECCCC
RLLVRDQERRDERVSRGLKPSPLKVTVTCAGRLDPRGRFFTTGESEKLVYCTSGGAPEAR
EEEEECHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCEEECCCCCEEEEEECCCCHHHH
SRLGAVATVVDGGPRVTMRRMSEDLHERGVRRLMVEGGGTIHTQFLTEDLADELHLVVAP
HHHCEEEEEECCCCCHHHHHHHHHHHHHHHHEEEECCCCEEEHHHHHHHHHHHHEEEEEE
FFVGDSRARRFVDDGPFPFRSDRPARLVDVRRIGEVVLLRYALSSRFEDAS
EEECCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]