| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
Click here to switch to the map view.
The map label for this gene is ybjG [C]
Identifier: 119715789
GI number: 119715789
Start: 1646203
End: 1646826
Strand: Direct
Name: ybjG [C]
Synonym: Noca_1553
Alternate gene names: 119715789
Gene position: 1646203-1646826 (Clockwise)
Preceding gene: 119715784
Following gene: 119715790
Centisome position: 33.02
GC content: 71.96
Gene sequence:
>624_bases GTGAGCACGAGCGCTGGATCCGTGGTGTGGGGTTCGGCTCAGGAGGCCTGGTTCGATGCGGTCAATCACCTGGCACGGGT CACGCCGTGGTTGCACACGCCGGCGCGGCTGTATGCCGAGTACGGTGTCGAGCTGTTCGCTGGCCTGCTGCTGGTGTCGT GGTGGCTGGCCCGCCGCGACGGCGACCTGCGCCGCGTCGCGGCGACGCTGTGGGCGCCCGTGGGTGCTCTGGTCGCCTTG GGGGTCAACCAGCCGCTGGCCTCGGCGGTCGCCGAGCCTCGGCCCTACATGGTGCTCCCGCACGCGATGATCCTGGTTTC GCGGAGCAGCGACTACTCCTTCCCGAGCGACCACGCCGTGATGGCCGGAGCCGTGGCAGCCGGAGTGCTGCTCGCGCACC GCAGGCTCGGACTCGTCACCGCCGCGCTCGCGGTCCTGATGGCCTTCACCCGCGTGTACGTGGGCGCGCACTTCCCCCTC GACGTCGCCGCCGGCCTGGTCGTCGGGGCCGTCGTGGCGGTGGTGTCGTTCCTCCTTGCCCGGTCGCTGATCGTGCGGCT GGTCGAGCTCCTGGCGCGAACCCCCGCGCGTGCCTTGCTGACCACCGGCTCGCGGGCGACGTGA
Upstream 100 bases:
>100_bases GAAGGTCCGGATCGATCGCTTCATGGCTGCTTCATGCGGGCGTGTCTACCTTCGTCCGGACGCGGGTCGCCGGTCGGGCT GCGGGATGGAGGACGACGTC
Downstream 100 bases:
>100_bases TGACCGGCCTGATCGAGCACCTGCTAGCGACCCCGGCATGGGTGGCGCTGCTGGTGGTGTTCGCACTGCCCGCCCTGGAG TCCTCGGCCTTCCTCGGGTT
Product: undecaprenyl-diphosphatase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 207; Mature: 206
Protein sequence:
>207_residues MSTSAGSVVWGSAQEAWFDAVNHLARVTPWLHTPARLYAEYGVELFAGLLLVSWWLARRDGDLRRVAATLWAPVGALVAL GVNQPLASAVAEPRPYMVLPHAMILVSRSSDYSFPSDHAVMAGAVAAGVLLAHRRLGLVTAALAVLMAFTRVYVGAHFPL DVAAGLVVGAVVAVVSFLLARSLIVRLVELLARTPARALLTTGSRAT
Sequences:
>Translated_207_residues MSTSAGSVVWGSAQEAWFDAVNHLARVTPWLHTPARLYAEYGVELFAGLLLVSWWLARRDGDLRRVAATLWAPVGALVAL GVNQPLASAVAEPRPYMVLPHAMILVSRSSDYSFPSDHAVMAGAVAAGVLLAHRRLGLVTAALAVLMAFTRVYVGAHFPL DVAAGLVVGAVVAVVSFLLARSLIVRLVELLARTPARALLTTGSRAT >Mature_206_residues STSAGSVVWGSAQEAWFDAVNHLARVTPWLHTPARLYAEYGVELFAGLLLVSWWLARRDGDLRRVAATLWAPVGALVALG VNQPLASAVAEPRPYMVLPHAMILVSRSSDYSFPSDHAVMAGAVAAGVLLAHRRLGLVTAALAVLMAFTRVYVGAHFPLD VAAGLVVGAVVAVVSFLLARSLIVRLVELLARTPARALLTTGSRAT
Specific function: Unknown
COG id: COG0671
COG function: function code I; Membrane-associated phospholipid phosphatase
Gene ontology:
Cell location: Integral Membrane Protein [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016118 - InterPro: IPR000326 - InterPro: IPR015414 [H]
Pfam domain/function: PF01569 PAP2; PF09335 SNARE_assoc [H]
EC number: NA
Molecular weight: Translated: 21943; Mature: 21812
Theoretical pI: Translated: 10.60; Mature: 10.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTSAGSVVWGSAQEAWFDAVNHLARVTPWLHTPARLYAEYGVELFAGLLLVSWWLARRD CCCCCCCEEECCHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCC GDLRRVAATLWAPVGALVALGVNQPLASAVAEPRPYMVLPHAMILVSRSSDYSFPSDHAV CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCEEECHHHEEEECCCCCCCCCCHHH MAGAVAAGVLLAHRRLGLVTAALAVLMAFTRVYVGAHFPLDVAAGLVVGAVVAVVSFLLA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH RSLIVRLVELLARTPARALLTTGSRAT HHHHHHHHHHHHHCCHHHHHCCCCCCC >Mature Secondary Structure STSAGSVVWGSAQEAWFDAVNHLARVTPWLHTPARLYAEYGVELFAGLLLVSWWLARRD CCCCCCEEECCHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCC GDLRRVAATLWAPVGALVALGVNQPLASAVAEPRPYMVLPHAMILVSRSSDYSFPSDHAV CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCEEECHHHEEEECCCCCCCCCCHHH MAGAVAAGVLLAHRRLGLVTAALAVLMAFTRVYVGAHFPLDVAAGLVVGAVVAVVSFLLA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH RSLIVRLVELLARTPARALLTTGSRAT HHHHHHHHHHHHHCCHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]