| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
Click here to switch to the map view.
The map label for this gene is pucR [H]
Identifier: 119715723
GI number: 119715723
Start: 1573278
End: 1574594
Strand: Direct
Name: pucR [H]
Synonym: Noca_1487
Alternate gene names: 119715723
Gene position: 1573278-1574594 (Clockwise)
Preceding gene: 119715719
Following gene: 119715724
Centisome position: 31.55
GC content: 74.64
Gene sequence:
>1317_bases GTGTTGATAAGTGGAGACCGCGAGGAGCTGGCCAGTGCCGCGCTGGCCAAGGTGGACGCCCTGCACACCGGGCTGACCCA GATCGTGCTCGAGGGCGGCAACCTGGACGGCATCGCGGCCGAGGTCGCGCGGGTGCTGGAGGTCGGCGTGGCGTTCACGA GCACCGACGGCCGCGAGCGCGCCTCGGCGCTCCCGGAGGACCTGCGCTCGGCCCTCGACTCCCACGACCTGGTCGACCCG ACCGGACGGTTGCGGGTCGAGCGGATGGCGGGCGACGGGGCCCCGGTCGAGACCGGCGAGGCGCGCAGCCTCCGGGTGGC GGCGGGCGGCGTGGACCTGGCCCGACTGGTCTGCCTGCGCCCGGACGAGCCGCTCAGCTCCGACGACGTGCACGCCCTGG AGCGGGCGGCCGCGGTCGCGGCGCTGCTGATCACCCGCGAGGAGGCCGTCACCGCGGTCGAGAACAAGTACCAGGGCGAC TTCCTGCGCGACCTGCTGATGCGCCGCGGCGGCCTGGCCAACGACCAGGCGTACGTCACCGAGCACGCCGCGACCTTCGG CTGGGACCTGGCCCGCCCGGTGGTCGTCGTCTCGGCCGAGATCGACCCGGTGCCGGGGGAGGAGCCCGTCGGGGGCGTGC AGCGCCGCCAGTGGCAGGAGCGCTTCTCGGCCGCGTGGCGCCAGGTCAGCAACGGCCTCGGGACCGGGATCCCGTGCGTG GACTTCTCCTCGGAGGTGGTCACGCTGCTGCCGTTGGCCGGCTACGGGCCGGAGGACGACCCCGGCGACCGGCGCGAGGA CGAGCCGGTCGCGGGCCACGACGTCGTACGCCGGGCGGTGACCGCCGTCGCCGGCGACAAGGGCGGCGGCCGCCGCTCGT TCTCGGTCGGCGTCAGCCGGGTCGCCCGCACCCTCGACGAGCTGCCCGGCGCCTACGCGCAGGCGCGCCGAGCCGTCGAG GTCGGCCGGCGGGTGAGCGGCTGGGGGTCCACGACGTTCTTCGACCAGCTCGGCCTGCACCGGCTGATCGCGCTCATCCC CCCGGAGGAGAACGGCGAGCTGCGCTCGTTCGTCCGCGACGTGCTCGGCCCGCTGGCCGAGCCGACCAGCGAGGCCGCCG ACCTGCGCGAGACGCTCCAGGTGCTGCTGGACACGAACTTCAACGTCGCCGAGGCCGCGCGGCTGCAGTTCTTCCACTAC AACACGATGCGCTACCGGGTCTCGAAGCTGGAGCGGCTGCTCGGGCCGCTCTCCACCGATCCGCACCTGCGCCTCGACGT CGCCGTGGCCCTGCGAGTGCTGGAGCTCGCCGGCTGA
Upstream 100 bases:
>100_bases GAGCCGGCGCGCTGACGGGGATCACCTTCCCGACGCTATCGGGGCCGATTACCGTTTGCCGATGTGAGGTTGTGCCAACG GGGCACGCAGAGGAGCGCAA
Downstream 100 bases:
>100_bases CCCCCGCGGCGTCCGCCCTCAGCCCTCCCCGGGCCGGCAGCGGGTGCCCGGCCGGTTTCCCCGGTGAACCGGGGAAACCG GAACTGTTGGGCCGAAACTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 438; Mature: 438
Protein sequence:
>438_residues MLISGDREELASAALAKVDALHTGLTQIVLEGGNLDGIAAEVARVLEVGVAFTSTDGRERASALPEDLRSALDSHDLVDP TGRLRVERMAGDGAPVETGEARSLRVAAGGVDLARLVCLRPDEPLSSDDVHALERAAAVAALLITREEAVTAVENKYQGD FLRDLLMRRGGLANDQAYVTEHAATFGWDLARPVVVVSAEIDPVPGEEPVGGVQRRQWQERFSAAWRQVSNGLGTGIPCV DFSSEVVTLLPLAGYGPEDDPGDRREDEPVAGHDVVRRAVTAVAGDKGGGRRSFSVGVSRVARTLDELPGAYAQARRAVE VGRRVSGWGSTTFFDQLGLHRLIALIPPEENGELRSFVRDVLGPLAEPTSEAADLRETLQVLLDTNFNVAEAARLQFFHY NTMRYRVSKLERLLGPLSTDPHLRLDVAVALRVLELAG
Sequences:
>Translated_438_residues MLISGDREELASAALAKVDALHTGLTQIVLEGGNLDGIAAEVARVLEVGVAFTSTDGRERASALPEDLRSALDSHDLVDP TGRLRVERMAGDGAPVETGEARSLRVAAGGVDLARLVCLRPDEPLSSDDVHALERAAAVAALLITREEAVTAVENKYQGD FLRDLLMRRGGLANDQAYVTEHAATFGWDLARPVVVVSAEIDPVPGEEPVGGVQRRQWQERFSAAWRQVSNGLGTGIPCV DFSSEVVTLLPLAGYGPEDDPGDRREDEPVAGHDVVRRAVTAVAGDKGGGRRSFSVGVSRVARTLDELPGAYAQARRAVE VGRRVSGWGSTTFFDQLGLHRLIALIPPEENGELRSFVRDVLGPLAEPTSEAADLRETLQVLLDTNFNVAEAARLQFFHY NTMRYRVSKLERLLGPLSTDPHLRLDVAVALRVLELAG >Mature_438_residues MLISGDREELASAALAKVDALHTGLTQIVLEGGNLDGIAAEVARVLEVGVAFTSTDGRERASALPEDLRSALDSHDLVDP TGRLRVERMAGDGAPVETGEARSLRVAAGGVDLARLVCLRPDEPLSSDDVHALERAAAVAALLITREEAVTAVENKYQGD FLRDLLMRRGGLANDQAYVTEHAATFGWDLARPVVVVSAEIDPVPGEEPVGGVQRRQWQERFSAAWRQVSNGLGTGIPCV DFSSEVVTLLPLAGYGPEDDPGDRREDEPVAGHDVVRRAVTAVAGDKGGGRRSFSVGVSRVARTLDELPGAYAQARRAVE VGRRVSGWGSTTFFDQLGLHRLIALIPPEENGELRSFVRDVLGPLAEPTSEAADLRETLQVLLDTNFNVAEAARLQFFHY NTMRYRVSKLERLLGPLSTDPHLRLDVAVALRVLELAG
Specific function: Activates the expression of pucFG, pucH, pucI, pucJKLM and guaD, while it represses pucABCDE and its own expression [H]
COG id: COG2508
COG function: function code TQ; Regulator of polyketide synthase expression
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the CdaR family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012914 [H]
Pfam domain/function: PF07905 PucR [H]
EC number: NA
Molecular weight: Translated: 47151; Mature: 47151
Theoretical pI: Translated: 4.72; Mature: 4.72
Prosite motif: PS00094 C5_MTASE_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLISGDREELASAALAKVDALHTGLTQIVLEGGNLDGIAAEVARVLEVGVAFTSTDGRER CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHEECCCCHHH ASALPEDLRSALDSHDLVDPTGRLRVERMAGDGAPVETGEARSLRVAAGGVDLARLVCLR HHCCHHHHHHHHCCCCCCCCCHHEEEEECCCCCCCCCCCCCCEEEEEECCCCHHHHEEEC PDEPLSSDDVHALERAAAVAALLITREEAVTAVENKYQGDFLRDLLMRRGGLANDQAYVT CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCHHHH EHAATFGWDLARPVVVVSAEIDPVPGEEPVGGVQRRQWQERFSAAWRQVSNGLGTGIPCV HHHHHHCHHHCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC DFSSEVVTLLPLAGYGPEDDPGDRREDEPVAGHDVVRRAVTAVAGDKGGGRRSFSVGVSR CCCCHHHHHHEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHH VARTLDELPGAYAQARRAVEVGRRVSGWGSTTFFDQLGLHRLIALIPPEENGELRSFVRD HHHHHHHCCCHHHHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHEECCCCCCCHHHHHHHH VLGPLAEPTSEAADLRETLQVLLDTNFNVAEAARLQFFHYNTMRYRVSKLERLLGPLSTD HHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC PHLRLDVAVALRVLELAG CCEEHHHHHHHHHHHHCC >Mature Secondary Structure MLISGDREELASAALAKVDALHTGLTQIVLEGGNLDGIAAEVARVLEVGVAFTSTDGRER CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHEECCCCHHH ASALPEDLRSALDSHDLVDPTGRLRVERMAGDGAPVETGEARSLRVAAGGVDLARLVCLR HHCCHHHHHHHHCCCCCCCCCHHEEEEECCCCCCCCCCCCCCEEEEEECCCCHHHHEEEC PDEPLSSDDVHALERAAAVAALLITREEAVTAVENKYQGDFLRDLLMRRGGLANDQAYVT CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCHHHH EHAATFGWDLARPVVVVSAEIDPVPGEEPVGGVQRRQWQERFSAAWRQVSNGLGTGIPCV HHHHHHCHHHCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC DFSSEVVTLLPLAGYGPEDDPGDRREDEPVAGHDVVRRAVTAVAGDKGGGRRSFSVGVSR CCCCHHHHHHEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHH VARTLDELPGAYAQARRAVEVGRRVSGWGSTTFFDQLGLHRLIALIPPEENGELRSFVRD HHHHHHHCCCHHHHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHEECCCCCCCHHHHHHHH VLGPLAEPTSEAADLRETLQVLLDTNFNVAEAARLQFFHYNTMRYRVSKLERLLGPLSTD HHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC PHLRLDVAVALRVLELAG CCEEHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377; 11344136; 12029039 [H]