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The map label for this gene is ocd2 [H]

Identifier: 119715650

GI number: 119715650

Start: 1497511

End: 1498464

Strand: Reverse

Name: ocd2 [H]

Synonym: Noca_1414

Alternate gene names: 119715650

Gene position: 1498464-1497511 (Counterclockwise)

Preceding gene: 119715651

Following gene: 119715646

Centisome position: 30.05

GC content: 74.0

Gene sequence:

>954_bases
ATGTCCGACGCCCAGCCGATCCTCCTCCTCAACCGCTCCGACGTACGTCGACTGCTCACCTGGCGCGAGCTCATCGATGC
CACCCGCTCCGCCCTGATCGCCGTCTCCGCCGGCGACCCGGTCACGACCTTGGCCGGCCAGCTCGTGGTGCCGGGAGCCG
CATTGCACCTCAAGGCCGGGGCGCTGCAGCAGCCCCCGCTCCTGTCGGTCAAGGCGAACCTCCGCCCGGACGCAGGCAAC
ACCTCCGGCGCGATCCTCGCGTTCGACCTGGCGCGGCAGCGGCTGCACGCGGTGATGGCCAGCGGCGACCTCACCTCCAT
GCGGACAGCAGCGATCGCCGCCGTCGCCGCCCAGGCGCTGCGCGGCGCGGCACCCGCCACGGTGGCACTGCTCGGGGCCG
GTCCCGTTGCGCGACGCGTCGACGAGGCGCTCACCCATCTCGGCCTGGCCGGCGAGGTGCGCGTCTGGAGCCGCCACCTC
CCCCGCGCGGCCGAGCTGGCGGACGCCTACCCCGACGTCGACCACCGGGCGCACGCGCGCGTGGACGACGCGCTGGAGGG
CGCCGACCTCGTCGTCACCTGCACGCCATCGCGAGCACCGCTGTTCGAGGCCGACCGGCTGCACGCCGGGGCCGTCGTCC
TGGGCATGGGAGCCGACTCCCCCGGCAAGCGCGAGCTGCCTTCTGCGCTGCTCGGAGCCGCTGTCGTCTACGCGGACGTC
CGGGCCGACGCGCTCCGCGTCGGTGACTCGGCGTACCTCGACGAGTCGGCTGCGGCGAAGGTCCTGGAGCTCGGCACCCT
GTTGAGCAGGAACGAACCGCCGCCGGTGGCGCCCGGACGGCACGTGGTCTTCGACTCGGTCGGTTCGTCGGCGGTGGACG
CCGCCGCGGTGGCCCTCGTCGCGGCGAAGGCGACCGAGCAAGGTCTCGGCCAGGCGTTCAGTCTCGACGTCTGA

Upstream 100 bases:

>100_bases
CTGCAACCCGAGGTGTACGGCACCCGCGGCGGGCAGGTCGTCCAGCGAATCCGCGTCGACGCCATGCGTCGCAGCCTCTG
ATCCGCACCCAGGGAGACCC

Downstream 100 bases:

>100_bases
GCGCAGGGACCTCGGGGCCGTCGGCGGCTAGGGCGTGTCTCTCAAGTCTCGGCCGTCGCGAGCGTCGTCCAGCGCGTGCT
CTCGCAAGGCGGCGGAGCGA

Product: ornithine cyclodeaminase

Products: NA

Alternate protein names: OCD 2 [H]

Number of amino acids: Translated: 317; Mature: 316

Protein sequence:

>317_residues
MSDAQPILLLNRSDVRRLLTWRELIDATRSALIAVSAGDPVTTLAGQLVVPGAALHLKAGALQQPPLLSVKANLRPDAGN
TSGAILAFDLARQRLHAVMASGDLTSMRTAAIAAVAAQALRGAAPATVALLGAGPVARRVDEALTHLGLAGEVRVWSRHL
PRAAELADAYPDVDHRAHARVDDALEGADLVVTCTPSRAPLFEADRLHAGAVVLGMGADSPGKRELPSALLGAAVVYADV
RADALRVGDSAYLDESAAAKVLELGTLLSRNEPPPVAPGRHVVFDSVGSSAVDAAAVALVAAKATEQGLGQAFSLDV

Sequences:

>Translated_317_residues
MSDAQPILLLNRSDVRRLLTWRELIDATRSALIAVSAGDPVTTLAGQLVVPGAALHLKAGALQQPPLLSVKANLRPDAGN
TSGAILAFDLARQRLHAVMASGDLTSMRTAAIAAVAAQALRGAAPATVALLGAGPVARRVDEALTHLGLAGEVRVWSRHL
PRAAELADAYPDVDHRAHARVDDALEGADLVVTCTPSRAPLFEADRLHAGAVVLGMGADSPGKRELPSALLGAAVVYADV
RADALRVGDSAYLDESAAAKVLELGTLLSRNEPPPVAPGRHVVFDSVGSSAVDAAAVALVAAKATEQGLGQAFSLDV
>Mature_316_residues
SDAQPILLLNRSDVRRLLTWRELIDATRSALIAVSAGDPVTTLAGQLVVPGAALHLKAGALQQPPLLSVKANLRPDAGNT
SGAILAFDLARQRLHAVMASGDLTSMRTAAIAAVAAQALRGAAPATVALLGAGPVARRVDEALTHLGLAGEVRVWSRHLP
RAAELADAYPDVDHRAHARVDDALEGADLVVTCTPSRAPLFEADRLHAGAVVLGMGADSPGKRELPSALLGAAVVYADVR
ADALRVGDSAYLDESAAAKVLELGTLLSRNEPPPVAPGRHVVFDSVGSSAVDAAAVALVAAKATEQGLGQAFSLDV

Specific function: Unknown

COG id: COG2423

COG function: function code E; Predicted ornithine cyclodeaminase, mu-crystallin homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ornithine cyclodeaminase family [H]

Homologues:

Organism=Homo sapiens, GI62241008, Length=216, Percent_Identity=31.0185185185185, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI4503065, Length=216, Percent_Identity=31.0185185185185, Blast_Score=91, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR003462 [H]

Pfam domain/function: PF02423 OCD_Mu_crystall [H]

EC number: =4.3.1.12 [H]

Molecular weight: Translated: 32555; Mature: 32424

Theoretical pI: Translated: 6.31; Mature: 6.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDAQPILLLNRSDVRRLLTWRELIDATRSALIAVSAGDPVTTLAGQLVVPGAALHLKAG
CCCCCCEEEECHHHHHHHHHHHHHHHHHHHEEEEEECCCCHHHHHCCCCCCCCEEEEECC
ALQQPPLLSVKANLRPDAGNTSGAILAFDLARQRLHAVMASGDLTSMRTAAIAAVAAQAL
CCCCCCCEEEEECCCCCCCCCCCEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
RGAAPATVALLGAGPVARRVDEALTHLGLAGEVRVWSRHLPRAAELADAYPDVDHRAHAR
CCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCHHHHHHCCHHHHHHHCCCCCCCHHHHC
VDDALEGADLVVTCTPSRAPLFEADRLHAGAVVLGMGADSPGKRELPSALLGAAVVYADV
HHHHCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHH
RADALRVGDSAYLDESAAAKVLELGTLLSRNEPPPVAPGRHVVFDSVGSSAVDAAAVALV
HHHHHHCCCHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHH
AAKATEQGLGQAFSLDV
HHHHHHHHCCCEEECCC
>Mature Secondary Structure 
SDAQPILLLNRSDVRRLLTWRELIDATRSALIAVSAGDPVTTLAGQLVVPGAALHLKAG
CCCCCEEEECHHHHHHHHHHHHHHHHHHHEEEEEECCCCHHHHHCCCCCCCCEEEEECC
ALQQPPLLSVKANLRPDAGNTSGAILAFDLARQRLHAVMASGDLTSMRTAAIAAVAAQAL
CCCCCCCEEEEECCCCCCCCCCCEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
RGAAPATVALLGAGPVARRVDEALTHLGLAGEVRVWSRHLPRAAELADAYPDVDHRAHAR
CCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCHHHHHHCCHHHHHHHCCCCCCCHHHHC
VDDALEGADLVVTCTPSRAPLFEADRLHAGAVVLGMGADSPGKRELPSALLGAAVVYADV
HHHHCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHH
RADALRVGDSAYLDESAAAKVLELGTLLSRNEPPPVAPGRHVVFDSVGSSAVDAAAVALV
HHHHHHCCCHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHH
AAKATEQGLGQAFSLDV
HHHHHHHHCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481432 [H]