Definition Nocardioides sp. JS614 chromosome, complete genome.
Accession NC_008699
Length 4,985,871

Click here to switch to the map view.

The map label for this gene is 119715433

Identifier: 119715433

GI number: 119715433

Start: 1270657

End: 1271232

Strand: Direct

Name: 119715433

Synonym: Noca_1197

Alternate gene names: NA

Gene position: 1270657-1271232 (Clockwise)

Preceding gene: 119715429

Following gene: 119715434

Centisome position: 25.49

GC content: 68.75

Gene sequence:

>576_bases
GTGTCGAGCCGTCGAGGAGTGGCCGTGTCGGTCCAGCGCGAAGAGCCGCTGCGCCGAGTCCGCATGTCCTGGGAGGAGTT
CCTGGAGCTGCCCGAGTGGCCGCGGGCGGAGTGGGTCGACGGCGAGGCGGTCATCATGAACTCGCCGCCACTGTTCAGAC
ATGGTCGAGCGGTCATGCAGTTCGGTGCGCTCCTGGTGCCGCTCTTCCCCGAGCACCATGTGGTGACTGAGGTCTATCTC
AGGTTGCCCCGCAACCGGGTGCGTCTCCCCGACGTCATGCTCACCGACACCGAGCCGAAGGACGGCTGCGTGTCCGATCC
ACCGCTGATGGTGGCCGAGGTGCTGTCGCTCGCGACCCGGTCCGAGGACACGATCCGCAAGCCGATGGAGTACGCGAAGG
GCGGCATCGGGCAGTACTGGGTGGTCGACCCATGGCTGCGGGCCATCGACCTGTGGCGCAACGCCGACGGCGAGTGGGAG
CTGCTCGCCCGGGTGGACGACGATCATCCGACCGCCGAGGTCGAGCTCGCCGGGGTGACGGTGCCGATCGACCTGCGCCG
GCTCCTGGGCGACTGA

Upstream 100 bases:

>100_bases
ACTCGACCAGCCGGGTGTGGAGAACGCAATCGGGTTGTCGGTCGGCGGTGACACGCTTCCGTCGTCCTGCTCTCGGGTCC
AGAATGGAAGGAGTCCGGAT

Downstream 100 bases:

>100_bases
ATGCGATTGGCGGACCGGCGCGCGCACGCCGTACCCTGTGGCCACAGGCGTTCGAGCCGTCATCAGCGGCGAGCCTCCGG
AAGAACGGTCCACGAGACCC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 191; Mature: 190

Protein sequence:

>191_residues
MSSRRGVAVSVQREEPLRRVRMSWEEFLELPEWPRAEWVDGEAVIMNSPPLFRHGRAVMQFGALLVPLFPEHHVVTEVYL
RLPRNRVRLPDVMLTDTEPKDGCVSDPPLMVAEVLSLATRSEDTIRKPMEYAKGGIGQYWVVDPWLRAIDLWRNADGEWE
LLARVDDDHPTAEVELAGVTVPIDLRRLLGD

Sequences:

>Translated_191_residues
MSSRRGVAVSVQREEPLRRVRMSWEEFLELPEWPRAEWVDGEAVIMNSPPLFRHGRAVMQFGALLVPLFPEHHVVTEVYL
RLPRNRVRLPDVMLTDTEPKDGCVSDPPLMVAEVLSLATRSEDTIRKPMEYAKGGIGQYWVVDPWLRAIDLWRNADGEWE
LLARVDDDHPTAEVELAGVTVPIDLRRLLGD
>Mature_190_residues
SSRRGVAVSVQREEPLRRVRMSWEEFLELPEWPRAEWVDGEAVIMNSPPLFRHGRAVMQFGALLVPLFPEHHVVTEVYLR
LPRNRVRLPDVMLTDTEPKDGCVSDPPLMVAEVLSLATRSEDTIRKPMEYAKGGIGQYWVVDPWLRAIDLWRNADGEWEL
LARVDDDHPTAEVELAGVTVPIDLRRLLGD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21886; Mature: 21755

Theoretical pI: Translated: 4.75; Mature: 4.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSRRGVAVSVQREEPLRRVRMSWEEFLELPEWPRAEWVDGEAVIMNSPPLFRHGRAVMQ
CCCCCCEEEEECCHHHHHHHHHCHHHHHCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHH
FGALLVPLFPEHHVVTEVYLRLPRNRVRLPDVMLTDTEPKDGCVSDPPLMVAEVLSLATR
HHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHC
SEDTIRKPMEYAKGGIGQYWVVDPWLRAIDLWRNADGEWELLARVDDDHPTAEVELAGVT
CHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHCCCCCEEEEEEECCCCCCCEEEEEEEE
VPIDLRRLLGD
CCHHHHHHHCC
>Mature Secondary Structure 
SSRRGVAVSVQREEPLRRVRMSWEEFLELPEWPRAEWVDGEAVIMNSPPLFRHGRAVMQ
CCCCCEEEEECCHHHHHHHHHCHHHHHCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHH
FGALLVPLFPEHHVVTEVYLRLPRNRVRLPDVMLTDTEPKDGCVSDPPLMVAEVLSLATR
HHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHC
SEDTIRKPMEYAKGGIGQYWVVDPWLRAIDLWRNADGEWELLARVDDDHPTAEVELAGVT
CHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHCCCCCEEEEEEECCCCCCCEEEEEEEE
VPIDLRRLLGD
CCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA