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The map label for this gene is yebA [H]

Identifier: 119715357

GI number: 119715357

Start: 1185426

End: 1187435

Strand: Reverse

Name: yebA [H]

Synonym: Noca_1119

Alternate gene names: 119715357

Gene position: 1187435-1185426 (Counterclockwise)

Preceding gene: 119715358

Following gene: 119715356

Centisome position: 23.82

GC content: 79.05

Gene sequence:

>2010_bases
ATGACCTCACGCCCCCTGCTGCGGATCGCGGCCTGCGTCGTGACGGTCGGGACCCTCGGGTCCACGCTCCTGGCGAGCCC
CGCCCCCGCGGCGGCCGCGACGCCCACGAGCAGCACGGCCCAGCAGTCGGTCGACGACGCCCGGGCCACCTACGAGCAGC
TCCGCGCCGAGGTCGCGGCGCTCAGCGCCCAGCACGACCGGCTGGCTGAATCGGCCGCCGGCGCCGAGGCCGAGGCCGCG
CGGCTGCGCGCCGAGGTGGCCGACGACGACCACGGCTTCCTGCAGGCCGTCGGCGACCTGGTCCGGCCCGGCCCCTCCGA
CCTGGACCGCGCCACCGAGGCCGCCGACGACGCGGCGTTCGCGCGCGACCTGGTCGACCTGGTCGACACCGCGCTCGCCG
AGCGGATCGCCGACACCGAGCGCGCCCGGGTCGCCTGGGAGCGCGCCGAGCGCCGCCAGGCGCGGGTCGAGGCGGCCTGG
ACCGCGGGCCAGGCCGCGGAGGCCGCGATCCGGCGGGCCCAGTTCCAGCCGGCGTACGAGGTCACCGACCCCGCCCAGGA
CCGGCGCAACCAGCGGGCCCTGCGCGCCTGGGAGCGCTACCTCCGGCTGCTGGCCGCCAACGCCGTCGTCCCGCCCCGCC
TCGCGGACCTCGCCCGCGGGCCGATCGAGCCGCTCGAGCCGCTGCGCGACTCGCGCAACGACGTCTCGCCCGGTGTCGCG
GTCCTCGACCCGCCGGGCTCCCCGGCGATCACCGTGCTGTCCGCCGAGGCGATCCGCGCCGTCTCGGACGCGTTCCACCG
GGTCGGGCTCCCGGACGTGCCCGGCGCGATCGAGCCCACGGCGTACGCCTGCGGCGGCCTGGTCGCGAACGCCTGGGGGG
CGTCCGCGACCGTGGCGCCGCTGCCCGCCGACGTCCCCGGCCAGTGGGACGCCCTGCGCACCGTGCCCGGCGCGTCCGTG
CAGGTGGGCGACGTCGTCGTCCTCGGCAGCCGCCGCGACGGCCTCGGCACCAGCGGTGTGTACGTCGGCCGCGACCAGGT
CGTCGCCGCCGACCCCACCACCGGCGTCGCGGCGGTGCGGCCGCTCACCGAGCCCGTGCTGGGCGTGCGCCGCGCCGGCC
TCGAGAGCGGCGGCCACCACGCCGCGCCCCCGGCCGGCGGCAGCTGCGGAGCGACCAGCCTGGCGCCGGACACCGTCACG
GGCGGGCCGCTCGGCCTGCCGGTCGCGCCGGGCAGCTACCAGCTGACCGCCGGGTTCGGCACCGCCGGACCGCTCTGGTC
CGACGGCGTCCACACCGGCCTGGACTTCGCCGCGCCGGTCGGCACCCCGGTGGTCGCCGCCGGCGCCGGCACCGTCACCG
TGCAACACCCGGCCTGGGCCGGGAGCCTGGTCCGGATCGACCACGGCGGCGGGGTCGAGACGTGGTACGCCCACCTCTCG
CGCGTCGACGTGACCTCCGGCCAGCTGGTCCGCGCCGGCGACCCGGTCGGCCTGGTCGGCGCCCGCGGCAACGCCAGCGG
CCCGCACCTGCACTTCGAGGTGCGGCTCGACGGCGCCGCCTACGACCCGGCGCTCGTCCTCGACCTGCCCGAGCGGCCGC
GCCCGTCGTACCCCAACGGCGAGATGCCGGCCGACGCGCTCTGCCCCGCGACCGCCGACGGCGCGCAGCTGCTGCGCTGC
GACGCGGCGGTCGCGTTCCGGCTGCTCGCGGCGGCGTACGCCGACGACCTCGGCGCCTCGCTGTGCATCACCGACTCCTA
CCGCTCGCGCGCCGGGCAGGAGCGGGTGTCCGCGACGAAGCCCGGCCTGGCGGCCTCCCCCGGCACCTCCGTGCACGGGC
TCGGGCTCGCGGTCGACCTGTGCGGCGGCGTCGAGCGGTTCGGCAGCACCGAGAACGACTGGCTGCTCGGGCACGGCCCC
GGCTACGGCTGGGTGCACCCGGGCTGGGCCGCCGCCGGCGGCAGCCGCCCGGAGCCGTGGCACTTCGAGTACGCCGGCGG
GGTGGCCTGA

Upstream 100 bases:

>100_bases
CCCGTTCCCTCCCCCGCCAGCCTCTCGGCCGACCCCGAGGAGCGCCGCTCGCTCGCCGCGCTCCAGGAGATCGCCTTCCT
CGACGAATAGACCCAGGACC

Downstream 100 bases:

>100_bases
GCCGAGATCGGCGGGGCAGCCGATAGCCTGTCCAGCACGACCACCGGAGGTGCGCGTGCAGACCGACAACACCGTCGACG
GCCTGTGGGAACGGTTCAAG

Product: peptidase M23B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 669; Mature: 668

Protein sequence:

>669_residues
MTSRPLLRIAACVVTVGTLGSTLLASPAPAAAATPTSSTAQQSVDDARATYEQLRAEVAALSAQHDRLAESAAGAEAEAA
RLRAEVADDDHGFLQAVGDLVRPGPSDLDRATEAADDAAFARDLVDLVDTALAERIADTERARVAWERAERRQARVEAAW
TAGQAAEAAIRRAQFQPAYEVTDPAQDRRNQRALRAWERYLRLLAANAVVPPRLADLARGPIEPLEPLRDSRNDVSPGVA
VLDPPGSPAITVLSAEAIRAVSDAFHRVGLPDVPGAIEPTAYACGGLVANAWGASATVAPLPADVPGQWDALRTVPGASV
QVGDVVVLGSRRDGLGTSGVYVGRDQVVAADPTTGVAAVRPLTEPVLGVRRAGLESGGHHAAPPAGGSCGATSLAPDTVT
GGPLGLPVAPGSYQLTAGFGTAGPLWSDGVHTGLDFAAPVGTPVVAAGAGTVTVQHPAWAGSLVRIDHGGGVETWYAHLS
RVDVTSGQLVRAGDPVGLVGARGNASGPHLHFEVRLDGAAYDPALVLDLPERPRPSYPNGEMPADALCPATADGAQLLRC
DAAVAFRLLAAAYADDLGASLCITDSYRSRAGQERVSATKPGLAASPGTSVHGLGLAVDLCGGVERFGSTENDWLLGHGP
GYGWVHPGWAAAGGSRPEPWHFEYAGGVA

Sequences:

>Translated_669_residues
MTSRPLLRIAACVVTVGTLGSTLLASPAPAAAATPTSSTAQQSVDDARATYEQLRAEVAALSAQHDRLAESAAGAEAEAA
RLRAEVADDDHGFLQAVGDLVRPGPSDLDRATEAADDAAFARDLVDLVDTALAERIADTERARVAWERAERRQARVEAAW
TAGQAAEAAIRRAQFQPAYEVTDPAQDRRNQRALRAWERYLRLLAANAVVPPRLADLARGPIEPLEPLRDSRNDVSPGVA
VLDPPGSPAITVLSAEAIRAVSDAFHRVGLPDVPGAIEPTAYACGGLVANAWGASATVAPLPADVPGQWDALRTVPGASV
QVGDVVVLGSRRDGLGTSGVYVGRDQVVAADPTTGVAAVRPLTEPVLGVRRAGLESGGHHAAPPAGGSCGATSLAPDTVT
GGPLGLPVAPGSYQLTAGFGTAGPLWSDGVHTGLDFAAPVGTPVVAAGAGTVTVQHPAWAGSLVRIDHGGGVETWYAHLS
RVDVTSGQLVRAGDPVGLVGARGNASGPHLHFEVRLDGAAYDPALVLDLPERPRPSYPNGEMPADALCPATADGAQLLRC
DAAVAFRLLAAAYADDLGASLCITDSYRSRAGQERVSATKPGLAASPGTSVHGLGLAVDLCGGVERFGSTENDWLLGHGP
GYGWVHPGWAAAGGSRPEPWHFEYAGGVA
>Mature_668_residues
TSRPLLRIAACVVTVGTLGSTLLASPAPAAAATPTSSTAQQSVDDARATYEQLRAEVAALSAQHDRLAESAAGAEAEAAR
LRAEVADDDHGFLQAVGDLVRPGPSDLDRATEAADDAAFARDLVDLVDTALAERIADTERARVAWERAERRQARVEAAWT
AGQAAEAAIRRAQFQPAYEVTDPAQDRRNQRALRAWERYLRLLAANAVVPPRLADLARGPIEPLEPLRDSRNDVSPGVAV
LDPPGSPAITVLSAEAIRAVSDAFHRVGLPDVPGAIEPTAYACGGLVANAWGASATVAPLPADVPGQWDALRTVPGASVQ
VGDVVVLGSRRDGLGTSGVYVGRDQVVAADPTTGVAAVRPLTEPVLGVRRAGLESGGHHAAPPAGGSCGATSLAPDTVTG
GPLGLPVAPGSYQLTAGFGTAGPLWSDGVHTGLDFAAPVGTPVVAAGAGTVTVQHPAWAGSLVRIDHGGGVETWYAHLSR
VDVTSGQLVRAGDPVGLVGARGNASGPHLHFEVRLDGAAYDPALVLDLPERPRPSYPNGEMPADALCPATADGAQLLRCD
AAVAFRLLAAAYADDLGASLCITDSYRSRAGQERVSATKPGLAASPGTSVHGLGLAVDLCGGVERFGSTENDWLLGHGPG
YGWVHPGWAAAGGSRPEPWHFEYAGGVA

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=101, Percent_Identity=44.5544554455446, Blast_Score=83, Evalue=6e-17,
Organism=Escherichia coli, GI87082174, Length=110, Percent_Identity=37.2727272727273, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 68637; Mature: 68506

Theoretical pI: Translated: 4.90; Mature: 4.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
0.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
0.1 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSRPLLRIAACVVTVGTLGSTLLASPAPAAAATPTSSTAQQSVDDARATYEQLRAEVAA
CCCCHHHHHHHHHHHHHHHCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
LSAQHDRLAESAAGAEAEAARLRAEVADDDHGFLQAVGDLVRPGPSDLDRATEAADDAAF
HHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
ARDLVDLVDTALAERIADTERARVAWERAERRQARVEAAWTAGQAAEAAIRRAQFQPAYE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCC
VTDPAQDRRNQRALRAWERYLRLLAANAVVPPRLADLARGPIEPLEPLRDSRNDVSPGVA
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHCCCCCCCCCEE
VLDPPGSPAITVLSAEAIRAVSDAFHRVGLPDVPGAIEPTAYACGGLVANAWGASATVAP
EECCCCCCEEEEEEHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCHHHHCCCCCCEECC
LPADVPGQWDALRTVPGASVQVGDVVVLGSRRDGLGTSGVYVGRDQVVAADPTTGVAAVR
CCCCCCCCCHHHHCCCCCCEEECCEEEECCCCCCCCCCCEEECCCCEEEECCCCCHHHHH
PLTEPVLGVRRAGLESGGHHAAPPAGGSCGATSLAPDTVTGGPLGLPVAPGSYQLTAGFG
HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCC
TAGPLWSDGVHTGLDFAAPVGTPVVAAGAGTVTVQHPAWAGSLVRIDHGGGVETWYAHLS
CCCCCCCCCCCCCCCCCCCCCCCEEECCCCEEEEECCCCCCCEEEEECCCCHHHHHHHHH
RVDVTSGQLVRAGDPVGLVGARGNASGPHLHFEVRLDGAAYDPALVLDLPERPRPSYPNG
HEECCCCCEEECCCCEEEEECCCCCCCCEEEEEEEECCCCCCCEEEEECCCCCCCCCCCC
EMPADALCPATADGAQLLRCDAAVAFRLLAAAYADDLGASLCITDSYRSRAGQERVSATK
CCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHCC
PGLAASPGTSVHGLGLAVDLCGGVERFGSTENDWLLGHGPGYGWVHPGWAAAGGSRPEPW
CCCCCCCCCCCCCCHHHHHHHHCHHHHCCCCCCEEEECCCCCCCCCCCHHCCCCCCCCCE
HFEYAGGVA
EECCCCCCC
>Mature Secondary Structure 
TSRPLLRIAACVVTVGTLGSTLLASPAPAAAATPTSSTAQQSVDDARATYEQLRAEVAA
CCCHHHHHHHHHHHHHHHCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
LSAQHDRLAESAAGAEAEAARLRAEVADDDHGFLQAVGDLVRPGPSDLDRATEAADDAAF
HHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
ARDLVDLVDTALAERIADTERARVAWERAERRQARVEAAWTAGQAAEAAIRRAQFQPAYE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCC
VTDPAQDRRNQRALRAWERYLRLLAANAVVPPRLADLARGPIEPLEPLRDSRNDVSPGVA
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHCCCCCCCCCEE
VLDPPGSPAITVLSAEAIRAVSDAFHRVGLPDVPGAIEPTAYACGGLVANAWGASATVAP
EECCCCCCEEEEEEHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCHHHHCCCCCCEECC
LPADVPGQWDALRTVPGASVQVGDVVVLGSRRDGLGTSGVYVGRDQVVAADPTTGVAAVR
CCCCCCCCCHHHHCCCCCCEEECCEEEECCCCCCCCCCCEEECCCCEEEECCCCCHHHHH
PLTEPVLGVRRAGLESGGHHAAPPAGGSCGATSLAPDTVTGGPLGLPVAPGSYQLTAGFG
HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCC
TAGPLWSDGVHTGLDFAAPVGTPVVAAGAGTVTVQHPAWAGSLVRIDHGGGVETWYAHLS
CCCCCCCCCCCCCCCCCCCCCCCEEECCCCEEEEECCCCCCCEEEEECCCCHHHHHHHHH
RVDVTSGQLVRAGDPVGLVGARGNASGPHLHFEVRLDGAAYDPALVLDLPERPRPSYPNG
HEECCCCCEEECCCCEEEEECCCCCCCCEEEEEEEECCCCCCCEEEEECCCCCCCCCCCC
EMPADALCPATADGAQLLRCDAAVAFRLLAAAYADDLGASLCITDSYRSRAGQERVSATK
CCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHCC
PGLAASPGTSVHGLGLAVDLCGGVERFGSTENDWLLGHGPGYGWVHPGWAAAGGSRPEPW
CCCCCCCCCCCCCCHHHHHHHHCHHHHCCCCCCEEEECCCCCCCCCCCHHCCCCCCCCCE
HFEYAGGVA
EECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]