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The map label for this gene is whiG [H]

Identifier: 119715356

GI number: 119715356

Start: 1184642

End: 1185376

Strand: Reverse

Name: whiG [H]

Synonym: Noca_1118

Alternate gene names: 119715356

Gene position: 1185376-1184642 (Counterclockwise)

Preceding gene: 119715357

Following gene: 119715355

Centisome position: 23.77

GC content: 72.52

Gene sequence:

>735_bases
GTGCGCGTGCAGACCGACAACACCGTCGACGGCCTGTGGGAACGGTTCAAGCAGGACGGCGACCGCGAGGCCCGCGACCG
CCTGGTCGTGCACTACTCACCGCTGGTCAAGTTCGTCGCCGGCCGCGTCCGCTCGGGCCTCCCGCCCGCGGTCGAGCACG
CCGACCTGGTCTCCGACGGGGTGATCGGCCTGCTGGACGCGCTGGACAAGTTCGACCCCGAGCGCGGCCTGCAGTTCCAG
ACCTACGCCGTCTCCCGGATCCGCGGCGCGATGGTCGACGGGCTCCGCGCCGCGGACTGGGTGCCGCGCTCGGTGCGCGA
GAAGATCCGCGACATCAACACCGCCCAGACCGAGCTCGAGCGGCGCCTGGGACGCGCACCCAAGGACGCCGAGGTGGCCG
ACCGGCTCGGCATCAGTGTCGGGGACCTCCGCAAGATCTACAGCCAGACGGCGCACACCAGCGTCGTCAGCTTCGAGACG
GTGCTCGACGAGGAGGACACGCCGCGGGCCACCACCGACCTGCCCGGCGCCGACGACGACATCCCGCCGGGCTTCCTGGC
CGCGGTCCGGGAGCTGCCCGAGCGCGACCAGGTGGTCGTGGCGCTGTACTACTGGGAGCGGCTCACCCTCGCGGAGATCG
GCCAGGTGCTCGGGGTGAGCGAGTCGCGGGTCAGCCAGCTGCACAGCCGGGCGACGCTCGCGCTGCGGCGCAAGCTGCTC
CAGGTCGCCGGCTGA

Upstream 100 bases:

>100_bases
GGCAGCCGCCCGGAGCCGTGGCACTTCGAGTACGCCGGCGGGGTGGCCTGAGCCGAGATCGGCGGGGCAGCCGATAGCCT
GTCCAGCACGACCACCGGAG

Downstream 100 bases:

>100_bases
TCCGGGGCGACGTGTCCGACTCGCAGTTCCGCGATCTCGGGTCCGCATATCCCAGGGCTCGACCGGTTGCCGGCCGATAG
GCTCCCCCGAGAGGGGGAAC

Product: FliA/WhiG family RNA polymerase sigma factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 244; Mature: 244

Protein sequence:

>244_residues
MRVQTDNTVDGLWERFKQDGDREARDRLVVHYSPLVKFVAGRVRSGLPPAVEHADLVSDGVIGLLDALDKFDPERGLQFQ
TYAVSRIRGAMVDGLRAADWVPRSVREKIRDINTAQTELERRLGRAPKDAEVADRLGISVGDLRKIYSQTAHTSVVSFET
VLDEEDTPRATTDLPGADDDIPPGFLAAVRELPERDQVVVALYYWERLTLAEIGQVLGVSESRVSQLHSRATLALRRKLL
QVAG

Sequences:

>Translated_244_residues
MRVQTDNTVDGLWERFKQDGDREARDRLVVHYSPLVKFVAGRVRSGLPPAVEHADLVSDGVIGLLDALDKFDPERGLQFQ
TYAVSRIRGAMVDGLRAADWVPRSVREKIRDINTAQTELERRLGRAPKDAEVADRLGISVGDLRKIYSQTAHTSVVSFET
VLDEEDTPRATTDLPGADDDIPPGFLAAVRELPERDQVVVALYYWERLTLAEIGQVLGVSESRVSQLHSRATLALRRKLL
QVAG
>Mature_244_residues
MRVQTDNTVDGLWERFKQDGDREARDRLVVHYSPLVKFVAGRVRSGLPPAVEHADLVSDGVIGLLDALDKFDPERGLQFQ
TYAVSRIRGAMVDGLRAADWVPRSVREKIRDINTAQTELERRLGRAPKDAEVADRLGISVGDLRKIYSQTAHTSVVSFET
VLDEEDTPRATTDLPGADDDIPPGFLAAVRELPERDQVVVALYYWERLTLAEIGQVLGVSESRVSQLHSRATLALRRKLL
QVAG

Specific function: The level of this sigma factor may be crucial in determining the developmental fate of hyphae [H]

COG id: COG1191

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family [H]

Homologues:

Organism=Escherichia coli, GI1788231, Length=217, Percent_Identity=44.2396313364055, Blast_Score=169, Evalue=1e-43,
Organism=Escherichia coli, GI1789098, Length=246, Percent_Identity=29.6747967479675, Blast_Score=68, Evalue=4e-13,
Organism=Escherichia coli, GI1789448, Length=206, Percent_Identity=28.1553398058252, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000943
- InterPro:   IPR007627
- InterPro:   IPR007624
- InterPro:   IPR007630
- InterPro:   IPR012845
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF04539 Sigma70_r3; PF04545 Sigma70_r4 [H]

EC number: NA

Molecular weight: Translated: 27180; Mature: 27180

Theoretical pI: Translated: 5.45; Mature: 5.45

Prosite motif: PS00715 SIGMA70_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVQTDNTVDGLWERFKQDGDREARDRLVVHYSPLVKFVAGRVRSGLPPAVEHADLVSDG
CCCCCCCCHHHHHHHHHHCCCHHHHHCEEHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
VIGLLDALDKFDPERGLQFQTYAVSRIRGAMVDGLRAADWVPRSVREKIRDINTAQTELE
HHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHH
RRLGRAPKDAEVADRLGISVGDLRKIYSQTAHTSVVSFETVLDEEDTPRATTDLPGADDD
HHHCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
IPPGFLAAVRELPERDQVVVALYYWERLTLAEIGQVLGVSESRVSQLHSRATLALRRKLL
CCHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
QVAG
HHCC
>Mature Secondary Structure
MRVQTDNTVDGLWERFKQDGDREARDRLVVHYSPLVKFVAGRVRSGLPPAVEHADLVSDG
CCCCCCCCHHHHHHHHHHCCCHHHHHCEEHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
VIGLLDALDKFDPERGLQFQTYAVSRIRGAMVDGLRAADWVPRSVREKIRDINTAQTELE
HHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHH
RRLGRAPKDAEVADRLGISVGDLRKIYSQTAHTSVVSFETVLDEEDTPRATTDLPGADDD
HHHCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
IPPGFLAAVRELPERDQVVVALYYWERLTLAEIGQVLGVSESRVSQLHSRATLALRRKLL
CCHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
QVAG
HHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2507166; 12000953 [H]