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The map label for this gene is cisA [H]

Identifier: 119715329

GI number: 119715329

Start: 1150783

End: 1152180

Strand: Reverse

Name: cisA [H]

Synonym: Noca_1090

Alternate gene names: 119715329

Gene position: 1152180-1150783 (Counterclockwise)

Preceding gene: 119715330

Following gene: 119715328

Centisome position: 23.11

GC content: 69.31

Gene sequence:

>1398_bases
ATGACAACCCGCTGCGCCCTCTACCTGCGCGTGAGCCTCGACCGCACCGGTGACCACCTCGCCGTCGACCGCCAGCGCGA
GGACTGTCTCGAAATTGCCCGCCTGCGGGGGTGGACCGTGGTCGGCGAGTACGTCGACAACAGCATCAGCGCGAGCAACG
CGGCCAAGGTACGGCCCGGCTACGAGCGCCTCGTGAGCGACTTCGATGCTGGCGCCTTCGACGCTCTTGTGTGCTGGGAC
CTCGACCGCCTAACGCGCCAGCCTCGCCAGTTGGAAGATTGGATCGACGCCGCGGAGGAGCGCGGGCTGCGACTCGTCAC
GGCCAATGGCGAAGCTGACCTCGGCACCGACGGAGGCCGCATGTTTGCGCGGGTCAAGGCAGCCGTGGCCAGATCGGAGG
TCGAGCGCAAGTCGGCCCGCCAGACACGAGCGCTGCGTCAGCGCGCCGAGCGAGGACGCCTGCCCGCGGGCGTTCGGCTC
ACCGGTTACGCGACCGACGGCACCGTTGATGAGGTCGAGGCGAGCGTCGTGCGCGAGATGTTCGAGCGCTTCCTCGTGGG
CGACTCATTGAAGGCCATCGCAGCCGATCTTGAGCGCCGCGGGATCGTGACCCGGTCGGGGCGCCCGTGGAACCCGAGCA
GCGTCCGCACGGTGCTGCTCAACCCTCGATACGCGGGTCTGTCGGTGTACAAGGGCGCGCCGGTCGTGAAGGACGGCGAG
CGCGTTCCCGGCGCGTGGGAGCCGATCGTCACCGAGGCGACGTATGACGCCGTGCGCGCGCGACTCGCCGACCCTGCACG
TAAGTCAAACCGCAAGGGCACCCATCGTCGCCACCTCGGGTCGGGCCTGTTTCTCTGCGGCGAGTGCGACAAGCCAATGC
GCACCCACAACTCCCGGTACCGCTGCCCCGACGCCCACCTGATGCGCTCCCGCGGGCAGGTCGATGACTTCGTGCTGCGA
GTAGTCCGTGCTCGGCTTGCCCGCCCTGACTTGCGTGACCTGCTCGCCTCATCCAACGACGACGAGAGTGCGTCTCTCAC
TGCCGAGATCGAGGACCAGCGCCGCCGTCTCGCAGCGATTGAGCACGACTACGACGAGGGCCACATCGACGGGCGCCGCT
ACGCCGAGGCGTCGGGCAAGGCCCGCGCCCGACTCGACGCCGCGCAGGCCCGCCGGACGGCCCTGACGGCAGGCTCTGCC
GCCTCTGGCATCCTCGATGCCCCTGACCCGGTCGCCGCCTTCGACAGTGCCTCGTTAGGGGCACGGCGCACCGTCATCGA
CGCCCTACTCTCGGTCCGCCTCATGCGTGCCCCCGTCGGAAGTAGGACGTTCAACCCAGACTCCGTCCACATCGAGTGGC
GAGCGCCGAGCGCACCCAGCACTTCGACGCCCGCGTGA

Upstream 100 bases:

>100_bases
GGACTGGGAGGTGTCACACCCCGTCTGACCTGCGCAAACGCGCCGATTCACACGTTGAAGCGGAACTCCACCCGATGCCG
CGATTATGTAACCTCTAGAC

Downstream 100 bases:

>100_bases
CCATCAGTTGGCCCCGACGACACCCGCGAAGGGCCGACACGTAGGCGCCGCTGCATACACGCTTAGCGTGTATGCGCAGG
TCAGGCCAATGTTCATCTCT

Product: recombinase

Products: NA

Alternate protein names: Stage IV sporulation protein CA [H]

Number of amino acids: Translated: 465; Mature: 464

Protein sequence:

>465_residues
MTTRCALYLRVSLDRTGDHLAVDRQREDCLEIARLRGWTVVGEYVDNSISASNAAKVRPGYERLVSDFDAGAFDALVCWD
LDRLTRQPRQLEDWIDAAEERGLRLVTANGEADLGTDGGRMFARVKAAVARSEVERKSARQTRALRQRAERGRLPAGVRL
TGYATDGTVDEVEASVVREMFERFLVGDSLKAIAADLERRGIVTRSGRPWNPSSVRTVLLNPRYAGLSVYKGAPVVKDGE
RVPGAWEPIVTEATYDAVRARLADPARKSNRKGTHRRHLGSGLFLCGECDKPMRTHNSRYRCPDAHLMRSRGQVDDFVLR
VVRARLARPDLRDLLASSNDDESASLTAEIEDQRRRLAAIEHDYDEGHIDGRRYAEASGKARARLDAAQARRTALTAGSA
ASGILDAPDPVAAFDSASLGARRTVIDALLSVRLMRAPVGSRTFNPDSVHIEWRAPSAPSTSTPA

Sequences:

>Translated_465_residues
MTTRCALYLRVSLDRTGDHLAVDRQREDCLEIARLRGWTVVGEYVDNSISASNAAKVRPGYERLVSDFDAGAFDALVCWD
LDRLTRQPRQLEDWIDAAEERGLRLVTANGEADLGTDGGRMFARVKAAVARSEVERKSARQTRALRQRAERGRLPAGVRL
TGYATDGTVDEVEASVVREMFERFLVGDSLKAIAADLERRGIVTRSGRPWNPSSVRTVLLNPRYAGLSVYKGAPVVKDGE
RVPGAWEPIVTEATYDAVRARLADPARKSNRKGTHRRHLGSGLFLCGECDKPMRTHNSRYRCPDAHLMRSRGQVDDFVLR
VVRARLARPDLRDLLASSNDDESASLTAEIEDQRRRLAAIEHDYDEGHIDGRRYAEASGKARARLDAAQARRTALTAGSA
ASGILDAPDPVAAFDSASLGARRTVIDALLSVRLMRAPVGSRTFNPDSVHIEWRAPSAPSTSTPA
>Mature_464_residues
TTRCALYLRVSLDRTGDHLAVDRQREDCLEIARLRGWTVVGEYVDNSISASNAAKVRPGYERLVSDFDAGAFDALVCWDL
DRLTRQPRQLEDWIDAAEERGLRLVTANGEADLGTDGGRMFARVKAAVARSEVERKSARQTRALRQRAERGRLPAGVRLT
GYATDGTVDEVEASVVREMFERFLVGDSLKAIAADLERRGIVTRSGRPWNPSSVRTVLLNPRYAGLSVYKGAPVVKDGER
VPGAWEPIVTEATYDAVRARLADPARKSNRKGTHRRHLGSGLFLCGECDKPMRTHNSRYRCPDAHLMRSRGQVDDFVLRV
VRARLARPDLRDLLASSNDDESASLTAEIEDQRRRLAAIEHDYDEGHIDGRRYAEASGKARARLDAAQARRTALTAGSAA
SGILDAPDPVAAFDSASLGARRTVIDALLSVRLMRAPVGSRTFNPDSVHIEWRAPSAPSTSTPA

Specific function: Putative site-specific recombinase having a very important role in sporulation. It probably plays a role in the recombination of spoIIIC and spoIVCB to form sigma K factor [H]

COG id: COG1961

COG function: function code L; Site-specific recombinases, DNA invertase Pin homologs

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 recombinase domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011109
- InterPro:   IPR006118
- InterPro:   IPR006119 [H]

Pfam domain/function: PF07508 Recombinase; PF00239 Resolvase [H]

EC number: NA

Molecular weight: Translated: 51251; Mature: 51120

Theoretical pI: Translated: 9.52; Mature: 9.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTRCALYLRVSLDRTGDHLAVDRQREDCLEIARLRGWTVVGEYVDNSISASNAAKVRPG
CCCEEEEEEEEEECCCCCCEEECCCHHHHHHHHHHCCCEEEHHHHCCCCCCCCCCCCCCC
YERLVSDFDAGAFDALVCWDLDRLTRQPRQLEDWIDAAEERGLRLVTANGEADLGTDGGR
HHHHHHHCCCCCHHHHHEECHHHHHCCHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCHH
MFARVKAAVARSEVERKSARQTRALRQRAERGRLPAGVRLTGYATDGTVDEVEASVVREM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHH
FERFLVGDSLKAIAADLERRGIVTRSGRPWNPSSVRTVLLNPRYAGLSVYKGAPVVKDGE
HHHHHCCCHHHHHHHHHHHCCCEECCCCCCCCCCCEEEEECCCCCCEEEECCCCCCCCCC
RVPGAWEPIVTEATYDAVRARLADPARKSNRKGTHRRHLGSGLFLCGECDKPMRTHNSRY
CCCCCCCCHHHHHHHHHHHHHHCCHHHHCCCCCCHHHHCCCCEEEECCCCCCHHHCCCCC
RCPDAHLMRSRGQVDDFVLRVVRARLARPDLRDLLASSNDDESASLTAEIEDQRRRLAAI
CCCHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCEEEEHHHHHHHHHHHH
EHDYDEGHIDGRRYAEASGKARARLDAAQARRTALTAGSAASGILDAPDPVAAFDSASLG
HCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCCCCCC
ARRTVIDALLSVRLMRAPVGSRTFNPDSVHIEWRAPSAPSTSTPA
HHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCCCC
>Mature Secondary Structure 
TTRCALYLRVSLDRTGDHLAVDRQREDCLEIARLRGWTVVGEYVDNSISASNAAKVRPG
CCEEEEEEEEEECCCCCCEEECCCHHHHHHHHHHCCCEEEHHHHCCCCCCCCCCCCCCC
YERLVSDFDAGAFDALVCWDLDRLTRQPRQLEDWIDAAEERGLRLVTANGEADLGTDGGR
HHHHHHHCCCCCHHHHHEECHHHHHCCHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCHH
MFARVKAAVARSEVERKSARQTRALRQRAERGRLPAGVRLTGYATDGTVDEVEASVVREM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHH
FERFLVGDSLKAIAADLERRGIVTRSGRPWNPSSVRTVLLNPRYAGLSVYKGAPVVKDGE
HHHHHCCCHHHHHHHHHHHCCCEECCCCCCCCCCCEEEEECCCCCCEEEECCCCCCCCCC
RVPGAWEPIVTEATYDAVRARLADPARKSNRKGTHRRHLGSGLFLCGECDKPMRTHNSRY
CCCCCCCCHHHHHHHHHHHHHHCCHHHHCCCCCCHHHHCCCCEEEECCCCCCHHHCCCCC
RCPDAHLMRSRGQVDDFVLRVVRARLARPDLRDLLASSNDDESASLTAEIEDQRRRLAAI
CCCHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCEEEEHHHHHHHHHHHH
EHDYDEGHIDGRRYAEASGKARARLDAAQARRTALTAGSAASGILDAPDPVAAFDSASLG
HCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCCCCCC
ARRTVIDALLSVRLMRAPVGSRTFNPDSVHIEWRAPSAPSTSTPA
HHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2105293; 7704261; 8969508; 9384377 [H]