| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
Click here to switch to the map view.
The map label for this gene is 119715312
Identifier: 119715312
GI number: 119715312
Start: 1130387
End: 1132564
Strand: Reverse
Name: 119715312
Synonym: Noca_1072
Alternate gene names: NA
Gene position: 1132564-1130387 (Counterclockwise)
Preceding gene: 119715313
Following gene: 119715310
Centisome position: 22.72
GC content: 68.46
Gene sequence:
>2178_bases ATGCGACGCATGTCCAGCAAGCTGCGAATGGGGGGACTAGCGGCGGTGGTCGGTGCGACCACGCTGGTGTTCCCGCTCCT CGCCATCGGGCCGGCCCAAGCGGCGCCCGCGGCCGACCTGTCGATCGAGAAGACCGTGGCGAGCGTCGCGCCGCCGATCA CCTTCGACCCGGCGTTGCGTGACGTGCGGGCGACCGGCCACGAGGACTGGACCCGAGACGGCCTACACATCTGGACGGAA GACTGGAACTCGACCGACAAGGTCGGCGAGTACGTCGCGACGTCCAAGCCACTGGCGACGATCGGCGAGCCGAGCCTTGC GTACACCACGATCCTGGGGACGATCCCGCCGGGCTTCGTGCTCAAGGTCGATGTCACGGGCGACGGGGTCAGCGACGGCG AGCTGATCGGCGAGTCGACCTTCTACGGCAACGACTGGTGGCTGAACGAGCCGCTGGGCAACCCTGGCGACTTCGGCGCG TTCGTGGCGGGCGCGCCCGTCGTCGGTGGCGGCTCCGGGTCGACCTGGCACGGCACCTTAGACCAGTGGCGGACCGCATT CCCCACGGCGACCGTCACAGCTTTCGGCTTCGGACTTGGATCGGGCGTCTTCGGCGAGGGCTACGTCACCGCGCTGGACT TCGCGGGCACGCACTACGACCTGACTCGCGACTACGAGTCTTCGATCCAGGCGGCGCCCGGTGACACCGTCGAGTACAAG ATCGCGATCGCCAACAACGGCGACGCGGGTGCCAGCAACATCACGATCAGCGACCTGCTGCCGAGCGACCTGACCTACGT GCCCGGCTCCCTGAGCCGACCCGACTGGTGCTCGGTCACCGGGCGGACCCTGAGCTGCACCGGCGGGGTCCTCCCGCCCG GCACGAGCTCCAACGTGTACCTCCAGGCCACGATCAGCGACACGGTGAGCAGCGCCGGCCTGCCGGCGACGGCCGGCCAC ATCGTCGACGTGCAGAAGCAGGAGGTCTTCGCCGACCTCCCGGCCGGCGCGACCAAGACCTACAGCGTCTTGTGCCCCAC CGGGTACGTGCCGACCGACGGCGGGCTGCTGCTCGACGCGGTGGATCAGGGTGGTGACTACGCCGACATCGTCGTCGCGA AGAGCAAGCCCACGGTCCAGTCCGGGATCAAGGGCTGGACGGTGACCGCGAGCAACCTCGGCGAGCAGCGCGGCCAGGGC AAGGTCAAGGTGACCTGCCTGGACGAGACGATCGGTTCCAGCAACGGTCACACGCACACGATCGACCTGACCGACTCGAC CGCCCAGGGCACGATCTCCGCCTCATCGCCCGACACCAACGGCGAGCTGGTGACCGTGTCCTGCTCGACCGGGTACACCC CGATCGCTCCCGAGCACACCGTGACCAGTGGGATCGCCGTGATCCGCTCGTCGTACGCCGACGCCAACGTGTGGCGCTGG GTGGTCGACCACGAGGTCGGCACCGCCGCGACGTTCGACGTCGACTGCCTGGCGCCCGAGACGGCGTCGAGCAACGGCCA CACCGCGACCCTGCCCCTCACCACCCAGCAGGACACCATCTCGGTGGGTCCGGAGAGCCGGGACGAGGGCATCGAGCAGT GCGGGTCGAGCGCCAACGCGATCACCGGCGGCTACGCCGGCCAGGACGCGAGCGTCCTCTCGCTCGGCAAGGAGCAGCGC GGCAACAACTACATGTTCCGCTTCTACAACGAGGACTGGTCGCAGGCGTGGAACGCCGACATCCAGGTCACCTGCGTGGG CGTGCGCACGGCCGACGAGCCGCAGTACTACCACATCACGAACACCGCGACGGTGAGCTCGCCCGACGACCCGACCAACA GCTCGTCGTCGGCCGACATCGCCATCGTCGGCGACGCGGTGCAGCCGGCGGCCGGCGTCTTGGTCGGCCCGAACGGCAAC CGCTCCGGAGACCCCGGGAGCATCAAGAAGGTCGGCCTGCGCTTCACCTGCACGTCGGCCTGCGCATTCACCGTCAAGGT GATCAAGGGCGGGAATGTCGTCGCGAAGGCGACCAAGTCGCTGGCGGCATCCCCCAACGTTCGGTGGGTGTACGTGCCGA CGACCAGTGCCGGCAAGAACCTCGCTCACAACGACGTCGTTACCGTCAGGGTGAGGACCTCGACCGCTACGACCAACACA TCGGTGACTCTGGACTGA
Upstream 100 bases:
>100_bases TTTCGGTGTGATCTGAGCCGCACCCGGCCCTAACGTTCGGCTGTTAGTAACGGCTGTGGTGCGTGCTCGGGTGCGTGACC CCTGGGGGAAGGGAACGAGC
Downstream 100 bases:
>100_bases CCGGGGGGTCGCTCGAGTCCCCCGTCCCGCGATCCACGCGGGGCGGGGGACTTCGCTGCTACGGCGCCAGCTTGTCCGTG GTGAGCGACTCGACCAGGTC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 725; Mature: 725
Protein sequence:
>725_residues MRRMSSKLRMGGLAAVVGATTLVFPLLAIGPAQAAPAADLSIEKTVASVAPPITFDPALRDVRATGHEDWTRDGLHIWTE DWNSTDKVGEYVATSKPLATIGEPSLAYTTILGTIPPGFVLKVDVTGDGVSDGELIGESTFYGNDWWLNEPLGNPGDFGA FVAGAPVVGGGSGSTWHGTLDQWRTAFPTATVTAFGFGLGSGVFGEGYVTALDFAGTHYDLTRDYESSIQAAPGDTVEYK IAIANNGDAGASNITISDLLPSDLTYVPGSLSRPDWCSVTGRTLSCTGGVLPPGTSSNVYLQATISDTVSSAGLPATAGH IVDVQKQEVFADLPAGATKTYSVLCPTGYVPTDGGLLLDAVDQGGDYADIVVAKSKPTVQSGIKGWTVTASNLGEQRGQG KVKVTCLDETIGSSNGHTHTIDLTDSTAQGTISASSPDTNGELVTVSCSTGYTPIAPEHTVTSGIAVIRSSYADANVWRW VVDHEVGTAATFDVDCLAPETASSNGHTATLPLTTQQDTISVGPESRDEGIEQCGSSANAITGGYAGQDASVLSLGKEQR GNNYMFRFYNEDWSQAWNADIQVTCVGVRTADEPQYYHITNTATVSSPDDPTNSSSSADIAIVGDAVQPAAGVLVGPNGN RSGDPGSIKKVGLRFTCTSACAFTVKVIKGGNVVAKATKSLAASPNVRWVYVPTTSAGKNLAHNDVVTVRVRTSTATTNT SVTLD
Sequences:
>Translated_725_residues MRRMSSKLRMGGLAAVVGATTLVFPLLAIGPAQAAPAADLSIEKTVASVAPPITFDPALRDVRATGHEDWTRDGLHIWTE DWNSTDKVGEYVATSKPLATIGEPSLAYTTILGTIPPGFVLKVDVTGDGVSDGELIGESTFYGNDWWLNEPLGNPGDFGA FVAGAPVVGGGSGSTWHGTLDQWRTAFPTATVTAFGFGLGSGVFGEGYVTALDFAGTHYDLTRDYESSIQAAPGDTVEYK IAIANNGDAGASNITISDLLPSDLTYVPGSLSRPDWCSVTGRTLSCTGGVLPPGTSSNVYLQATISDTVSSAGLPATAGH IVDVQKQEVFADLPAGATKTYSVLCPTGYVPTDGGLLLDAVDQGGDYADIVVAKSKPTVQSGIKGWTVTASNLGEQRGQG KVKVTCLDETIGSSNGHTHTIDLTDSTAQGTISASSPDTNGELVTVSCSTGYTPIAPEHTVTSGIAVIRSSYADANVWRW VVDHEVGTAATFDVDCLAPETASSNGHTATLPLTTQQDTISVGPESRDEGIEQCGSSANAITGGYAGQDASVLSLGKEQR GNNYMFRFYNEDWSQAWNADIQVTCVGVRTADEPQYYHITNTATVSSPDDPTNSSSSADIAIVGDAVQPAAGVLVGPNGN RSGDPGSIKKVGLRFTCTSACAFTVKVIKGGNVVAKATKSLAASPNVRWVYVPTTSAGKNLAHNDVVTVRVRTSTATTNT SVTLD >Mature_725_residues MRRMSSKLRMGGLAAVVGATTLVFPLLAIGPAQAAPAADLSIEKTVASVAPPITFDPALRDVRATGHEDWTRDGLHIWTE DWNSTDKVGEYVATSKPLATIGEPSLAYTTILGTIPPGFVLKVDVTGDGVSDGELIGESTFYGNDWWLNEPLGNPGDFGA FVAGAPVVGGGSGSTWHGTLDQWRTAFPTATVTAFGFGLGSGVFGEGYVTALDFAGTHYDLTRDYESSIQAAPGDTVEYK IAIANNGDAGASNITISDLLPSDLTYVPGSLSRPDWCSVTGRTLSCTGGVLPPGTSSNVYLQATISDTVSSAGLPATAGH IVDVQKQEVFADLPAGATKTYSVLCPTGYVPTDGGLLLDAVDQGGDYADIVVAKSKPTVQSGIKGWTVTASNLGEQRGQG KVKVTCLDETIGSSNGHTHTIDLTDSTAQGTISASSPDTNGELVTVSCSTGYTPIAPEHTVTSGIAVIRSSYADANVWRW VVDHEVGTAATFDVDCLAPETASSNGHTATLPLTTQQDTISVGPESRDEGIEQCGSSANAITGGYAGQDASVLSLGKEQR GNNYMFRFYNEDWSQAWNADIQVTCVGVRTADEPQYYHITNTATVSSPDDPTNSSSSADIAIVGDAVQPAAGVLVGPNGN RSGDPGSIKKVGLRFTCTSACAFTVKVIKGGNVVAKATKSLAASPNVRWVYVPTTSAGKNLAHNDVVTVRVRTSTATTNT SVTLD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 75203; Mature: 75203
Theoretical pI: Translated: 4.43; Mature: 4.43
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRRMSSKLRMGGLAAVVGATTLVFPLLAIGPAQAAPAADLSIEKTVASVAPPITFDPALR CCCCHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCEECHHHH DVRATGHEDWTRDGLHIWTEDWNSTDKVGEYVATSKPLATIGEPSLAYTTILGTIPPGFV HHHCCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCEECCCCCEEEEEEEECCCCCEE LKVDVTGDGVSDGELIGESTFYGNDWWLNEPLGNPGDFGAFVAGAPVVGGGSGSTWHGTL EEEEECCCCCCCCCEEECCEEECCCEEECCCCCCCCCCCHHHCCCCEEECCCCCCCCCCH DQWRTAFPTATVTAFGFGLGSGVFGEGYVTALDFAGTHYDLTRDYESSIQAAPGDTVEYK HHHHHHCCCCEEEEEECCCCCCCCCCCEEEEEEECCCEEEECCCHHHHCCCCCCCCEEEE IAIANNGDAGASNITISDLLPSDLTYVPGSLSRPDWCSVTGRTLSCTGGVLPPGTSSNVY EEEECCCCCCCCCEEEHHCCCCCCEECCCCCCCCCEEEECCCEEEECCCCCCCCCCCCEE LQATISDTVSSAGLPATAGHIVDVQKQEVFADLPAGATKTYSVLCPTGYVPTDGGLLLDA EEEEECHHHHHCCCCCCCCEEEECCHHHHHCCCCCCCCCEEEEEECCCCCCCCCCEEEEE VDQGGDYADIVVAKSKPTVQSGIKGWTVTASNLGEQRGQGKVKVTCLDETIGSSNGHTHT ECCCCCEEEEEEECCCCHHHHCCCCEEEEHHHHHHHCCCCCEEEEEECCCCCCCCCCEEE IDLTDSTAQGTISASSPDTNGELVTVSCSTGYTPIAPEHTVTSGIAVIRSSYADANVWRW EEECCCCCCCEEECCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEE VVDHEVGTAATFDVDCLAPETASSNGHTATLPLTTQQDTISVGPESRDEGIEQCGSSANA EEECCCCCEEEEEEEECCCCCCCCCCCEEEEEEECCCCEEECCCCCHHHHHHHHCCCCCE ITGGYAGQDASVLSLGKEQRGNNYMFRFYNEDWSQAWNADIQVTCVGVRTADEPQYYHIT EECCCCCCCCHHHHCCHHHCCCCEEEEEECCCHHHHCCCCEEEEEEEEEECCCCCEEEEE NTATVSSPDDPTNSSSSADIAIVGDAVQPAAGVLVGPNGNRSGDPGSIKKVGLRFTCTSA CCEEECCCCCCCCCCCCCEEEEEECCCCCCCCEEECCCCCCCCCCCCEEEEEEEEEECCC CAFTVKVIKGGNVVAKATKSLAASPNVRWVYVPTTSAGKNLAHNDVVTVRVRTSTATTNT EEEEEEEEECCCEEEHHHHHHCCCCCEEEEEEECCCCCCCCCCCCEEEEEEEECCCCCCE SVTLD EEEEC >Mature Secondary Structure MRRMSSKLRMGGLAAVVGATTLVFPLLAIGPAQAAPAADLSIEKTVASVAPPITFDPALR CCCCHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCEECHHHH DVRATGHEDWTRDGLHIWTEDWNSTDKVGEYVATSKPLATIGEPSLAYTTILGTIPPGFV HHHCCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCEECCCCCEEEEEEEECCCCCEE LKVDVTGDGVSDGELIGESTFYGNDWWLNEPLGNPGDFGAFVAGAPVVGGGSGSTWHGTL EEEEECCCCCCCCCEEECCEEECCCEEECCCCCCCCCCCHHHCCCCEEECCCCCCCCCCH DQWRTAFPTATVTAFGFGLGSGVFGEGYVTALDFAGTHYDLTRDYESSIQAAPGDTVEYK HHHHHHCCCCEEEEEECCCCCCCCCCCEEEEEEECCCEEEECCCHHHHCCCCCCCCEEEE IAIANNGDAGASNITISDLLPSDLTYVPGSLSRPDWCSVTGRTLSCTGGVLPPGTSSNVY EEEECCCCCCCCCEEEHHCCCCCCEECCCCCCCCCEEEECCCEEEECCCCCCCCCCCCEE LQATISDTVSSAGLPATAGHIVDVQKQEVFADLPAGATKTYSVLCPTGYVPTDGGLLLDA EEEEECHHHHHCCCCCCCCEEEECCHHHHHCCCCCCCCCEEEEEECCCCCCCCCCEEEEE VDQGGDYADIVVAKSKPTVQSGIKGWTVTASNLGEQRGQGKVKVTCLDETIGSSNGHTHT ECCCCCEEEEEEECCCCHHHHCCCCEEEEHHHHHHHCCCCCEEEEEECCCCCCCCCCEEE IDLTDSTAQGTISASSPDTNGELVTVSCSTGYTPIAPEHTVTSGIAVIRSSYADANVWRW EEECCCCCCCEEECCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEE VVDHEVGTAATFDVDCLAPETASSNGHTATLPLTTQQDTISVGPESRDEGIEQCGSSANA EEECCCCCEEEEEEEECCCCCCCCCCCEEEEEEECCCCEEECCCCCHHHHHHHHCCCCCE ITGGYAGQDASVLSLGKEQRGNNYMFRFYNEDWSQAWNADIQVTCVGVRTADEPQYYHIT EECCCCCCCCHHHHCCHHHCCCCEEEEEECCCHHHHCCCCEEEEEEEEEECCCCCEEEEE NTATVSSPDDPTNSSSSADIAIVGDAVQPAAGVLVGPNGNRSGDPGSIKKVGLRFTCTSA CCEEECCCCCCCCCCCCCEEEEEECCCCCCCCEEECCCCCCCCCCCCEEEEEEEEEECCC CAFTVKVIKGGNVVAKATKSLAASPNVRWVYVPTTSAGKNLAHNDVVTVRVRTSTATTNT EEEEEEEEECCCEEEHHHHHHCCCCCEEEEEEECCCCCCCCCCCCEEEEEEEECCCCCCE SVTLD EEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA