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The map label for this gene is rbsC [H]

Identifier: 119715055

GI number: 119715055

Start: 852075

End: 853136

Strand: Direct

Name: rbsC [H]

Synonym: Noca_0808

Alternate gene names: 119715055

Gene position: 852075-853136 (Clockwise)

Preceding gene: 119715054

Following gene: 119715057

Centisome position: 17.09

GC content: 66.38

Gene sequence:

>1062_bases
ATGAACACGAAGCAGCGCCAGAACGCCGGAAGCATCGTTGAGTTCCTCAGCAAGTTCGCGCTGGTGGTCGTCCTGATCGC
ACTGGCGCTGACCTTCTCACTGATGCGACCGGAGTCGTTCGGCACGGTCGACAACTTCAAGGCAATCGCGGACAACTACG
CCGTGGTGCTCCTGCTCGCCTGCGCCGCGACGCTGCCACTGATCGTCGGTCAGTTCGACCTTTCGTTCGGCAGTCTGTTC
GCGTTCGTGCAGATGATCGTCGTCGGAAACGTCATCAACAAGGGGTGGAGCGTGCCGTCCGCCCTGCTCGTCGCGTTCAT
GGCGGCGACCTTGGTCGGCCTGATCAACGGCGTGGCCGTGGCCAAGTTCAAGATCTCGTCCTTCATCGCCACGCTCGCGT
CGGGCAGCATCCTCACCGGACTCTCGCTGGCGTACTCGAAGGGCGAGTCTGTCTTCGGCGCGGCGCCCGACTCGCTGACC
AGGATCGCACGCTCGGAGTTCCTCGGCATGCGGCTACCGATCTGGTACAGCGTCGTCGTCGTCATCGTCCTGGCCATCGT
CCTGCACCGCACCCCCGTGGGTCGGCGGATGTACGCCACCGGCTCCAATGAGCGCGCCGCCCTGCTGACCGGGATCCCTG
CGCGGCGCTACGTCATGGCCACCTTCGTGCTGGCTGCCTGGCTCGCTGCCGCCGCCGGCGTCGTGATCGGATCGCGGATC
GGAGCAGCCACTCCCGACAGCGGCAGCACGATGCTCATCCCGGCCTTCGCGGGTGCGTTCTTGGGGTCAACCGCATTCAC
CGGGGGCCGCTTCAACATTCCGGGCACCGTGGTCGCCGTGCTCGTGGTCGGGATCACCGTCACCGGTCTCCAGCAGCTCG
GTGCGGCGCTGTGGGTCGAGCCGGTCTTCAACGGCATCGTGTTGTTCGCGGCGGTGGGCCTGTCTGCCTGGATGTCGCGG
CTGCGTGCCGCACGGGCGCGCAAGGCTCGACTGCGCGAGCTCAGCGAGCACCGTCAGGCGGAGGAAGGCAGGGCCGAGGG
GTACGACGAGATCACGGTTTGA

Upstream 100 bases:

>100_bases
TCATCGTCCTGCGCTACGGGCAGGTCGTCGCGGAGCTGGAGTCCGAGGAAGCCACAGTCGAACGCCTTGCCGCACTTAGT
AGCTAGACGGAGCGAACGAG

Downstream 100 bases:

>100_bases
GCAACCGGTCCACGACGAGAGCGCTGTAGTGATCCGCCACTCGTTCGATGGTCGCCGAGCCGCCGGGTCGGAACCAGTCG
TTGATGGACAGGCACATGCC

Product: inner-membrane translocator

Products: ADP; phosphate; ribose [Cytoplasm]; D-allose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 353; Mature: 353

Protein sequence:

>353_residues
MNTKQRQNAGSIVEFLSKFALVVVLIALALTFSLMRPESFGTVDNFKAIADNYAVVLLLACAATLPLIVGQFDLSFGSLF
AFVQMIVVGNVINKGWSVPSALLVAFMAATLVGLINGVAVAKFKISSFIATLASGSILTGLSLAYSKGESVFGAAPDSLT
RIARSEFLGMRLPIWYSVVVVIVLAIVLHRTPVGRRMYATGSNERAALLTGIPARRYVMATFVLAAWLAAAAGVVIGSRI
GAATPDSGSTMLIPAFAGAFLGSTAFTGGRFNIPGTVVAVLVVGITVTGLQQLGAALWVEPVFNGIVLFAAVGLSAWMSR
LRAARARKARLRELSEHRQAEEGRAEGYDEITV

Sequences:

>Translated_353_residues
MNTKQRQNAGSIVEFLSKFALVVVLIALALTFSLMRPESFGTVDNFKAIADNYAVVLLLACAATLPLIVGQFDLSFGSLF
AFVQMIVVGNVINKGWSVPSALLVAFMAATLVGLINGVAVAKFKISSFIATLASGSILTGLSLAYSKGESVFGAAPDSLT
RIARSEFLGMRLPIWYSVVVVIVLAIVLHRTPVGRRMYATGSNERAALLTGIPARRYVMATFVLAAWLAAAAGVVIGSRI
GAATPDSGSTMLIPAFAGAFLGSTAFTGGRFNIPGTVVAVLVVGITVTGLQQLGAALWVEPVFNGIVLFAAVGLSAWMSR
LRAARARKARLRELSEHRQAEEGRAEGYDEITV
>Mature_353_residues
MNTKQRQNAGSIVEFLSKFALVVVLIALALTFSLMRPESFGTVDNFKAIADNYAVVLLLACAATLPLIVGQFDLSFGSLF
AFVQMIVVGNVINKGWSVPSALLVAFMAATLVGLINGVAVAKFKISSFIATLASGSILTGLSLAYSKGESVFGAAPDSLT
RIARSEFLGMRLPIWYSVVVVIVLAIVLHRTPVGRRMYATGSNERAALLTGIPARRYVMATFVLAAWLAAAAGVVIGSRI
GAATPDSGSTMLIPAFAGAFLGSTAFTGGRFNIPGTVVAVLVVGITVTGLQQLGAALWVEPVFNGIVLFAAVGLSAWMSR
LRAARARKARLRELSEHRQAEEGRAEGYDEITV

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790524, Length=306, Percent_Identity=28.7581699346405, Blast_Score=118, Evalue=6e-28,
Organism=Escherichia coli, GI145693152, Length=298, Percent_Identity=29.8657718120805, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI1790191, Length=304, Percent_Identity=29.6052631578947, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1788896, Length=319, Percent_Identity=28.8401253918495, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1787794, Length=288, Percent_Identity=29.1666666666667, Blast_Score=95, Evalue=9e-21,
Organism=Escherichia coli, GI1787793, Length=296, Percent_Identity=28.3783783783784, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1789992, Length=374, Percent_Identity=24.0641711229947, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI145693214, Length=243, Percent_Identity=32.0987654320988, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI87082395, Length=310, Percent_Identity=27.741935483871, Blast_Score=72, Evalue=7e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 37202; Mature: 37202

Theoretical pI: Translated: 10.75; Mature: 10.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTKQRQNAGSIVEFLSKFALVVVLIALALTFSLMRPESFGTVDNFKAIADNYAVVLLLA
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
CAATLPLIVGQFDLSFGSLFAFVQMIVVGNVINKGWSVPSALLVAFMAATLVGLINGVAV
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
AKFKISSFIATLASGSILTGLSLAYSKGESVFGAAPDSLTRIARSEFLGMRLPIWYSVVV
HHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHH
VIVLAIVLHRTPVGRRMYATGSNERAALLTGIPARRYVMATFVLAAWLAAAAGVVIGSRI
HHHHHHHHHCCCCCCEEEECCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
GAATPDSGSTMLIPAFAGAFLGSTAFTGGRFNIPGTVVAVLVVGITVTGLQQLGAALWVE
CCCCCCCCCEEEHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
PVFNGIVLFAAVGLSAWMSRLRAARARKARLRELSEHRQAEEGRAEGYDEITV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MNTKQRQNAGSIVEFLSKFALVVVLIALALTFSLMRPESFGTVDNFKAIADNYAVVLLLA
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
CAATLPLIVGQFDLSFGSLFAFVQMIVVGNVINKGWSVPSALLVAFMAATLVGLINGVAV
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
AKFKISSFIATLASGSILTGLSLAYSKGESVFGAAPDSLTRIARSEFLGMRLPIWYSVVV
HHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHH
VIVLAIVLHRTPVGRRMYATGSNERAALLTGIPARRYVMATFVLAAWLAAAAGVVIGSRI
HHHHHHHHHCCCCCCEEEECCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
GAATPDSGSTMLIPAFAGAFLGSTAFTGGRFNIPGTVVAVLVVGITVTGLQQLGAALWVE
CCCCCCCCCEEEHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
PVFNGIVLFAAVGLSAWMSRLRAARARKARLRELSEHRQAEEGRAEGYDEITV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: H2O; ribose [Periplasm]; D-allose [Periplasm]; ATP [C]

Specific reaction: ATP + H2O + ribose [Periplasm] = ADP + phosphate + ribose [Cytoplasm] D-allose [Periplasm] + ATP + H2O = D-allose [Cytoplasm] + ADP + phosphate [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]