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The map label for this gene is csrA

Identifier: 119715019

GI number: 119715019

Start: 815723

End: 815974

Strand: Direct

Name: csrA

Synonym: Noca_0772

Alternate gene names: 119715019

Gene position: 815723-815974 (Clockwise)

Preceding gene: 119715018

Following gene: 119715020

Centisome position: 16.36

GC content: 72.62

Gene sequence:

>252_bases
ATGCTGGTCTTGAGCCGTCGTGCCGGAGAGAGCGTGGTGCTCGGCGAGGACGTCGTCGTGACGATCCTCGAGGTCCGCGG
CGACGTCGTCCGGGTCGGCATCGACGCGCCCCGCTCGGTCAGGGTGCACCGCGCCGAGCTGCTCGCCCAGCTCGAGGAGA
CCAACCGCCAGGCCGCGTCCCCCAGCGAGGACGTGATCGCCAACCTGGCCCGCGCCCTCGACCACGGCACCGGCACCGAC
CCCTCCTCCTGA

Upstream 100 bases:

>100_bases
ATCGTGCTGGACGACACCGACCTGCCGCTCGCCGCGCCACTGGTCTCGTGACCCTCGGGTCGGGCCCCATCGCCCGGCCA
CTGCAGGTAGCGTGACCGCC

Downstream 100 bases:

>100_bases
ACTCTCTGGACGATAGTCCCTGACGTTTGTGGGGTATGGGAGCGCTCCCATGCCTCGGGATCGTCAGGGACTACCGTTCG
AAGTCAAAGTTGAAAAGGTC

Product: carbon storage regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 83; Mature: 83

Protein sequence:

>83_residues
MLVLSRRAGESVVLGEDVVVTILEVRGDVVRVGIDAPRSVRVHRAELLAQLEETNRQAASPSEDVIANLARALDHGTGTD
PSS

Sequences:

>Translated_83_residues
MLVLSRRAGESVVLGEDVVVTILEVRGDVVRVGIDAPRSVRVHRAELLAQLEETNRQAASPSEDVIANLARALDHGTGTD
PSS
>Mature_83_residues
MLVLSRRAGESVVLGEDVVVTILEVRGDVVRVGIDAPRSVRVHRAELLAQLEETNRQAASPSEDVIANLARALDHGTGTD
PSS

Specific function: Could accelerate the degradation of some genes transcripts potentially through selective RNA binding

COG id: COG1551

COG function: function code T; Carbon storage regulator (could also regulate swarming and quorum sensing)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CsrA family

Homologues:

Organism=Escherichia coli, GI1789047, Length=60, Percent_Identity=43.3333333333333, Blast_Score=63, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CSRA_NOCSJ (A1SER2)

Other databases:

- EMBL:   CP000509
- RefSeq:   YP_921984.1
- ProteinModelPortal:   A1SER2
- SMR:   A1SER2
- STRING:   A1SER2
- GeneID:   4598852
- GenomeReviews:   CP000509_GR
- KEGG:   nca:Noca_0772
- eggNOG:   COG1551
- HOGENOM:   HBG724655
- OMA:   RIANEQA
- PhylomeDB:   A1SER2
- BioCyc:   NSP35761:NOCA_0772-MONOMER
- HAMAP:   MF_00167
- InterPro:   IPR003751
- ProDom:   PD009007
- TIGRFAMs:   TIGR00202

Pfam domain/function: PF02599 CsrA

EC number: NA

Molecular weight: Translated: 8842; Mature: 8842

Theoretical pI: Translated: 4.76; Mature: 4.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVLSRRAGESVVLGEDVVVTILEVRGDVVRVGIDAPRSVRVHRAELLAQLEETNRQAAS
CEEECCCCCCEEEECCHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCC
PSEDVIANLARALDHGTGTDPSS
CHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MLVLSRRAGESVVLGEDVVVTILEVRGDVVRVGIDAPRSVRVHRAELLAQLEETNRQAAS
CEEECCCCCCEEEECCHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCC
PSEDVIANLARALDHGTGTDPSS
CHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA