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The map label for this gene is ymdB [C]

Identifier: 119714976

GI number: 119714976

Start: 777674

End: 778264

Strand: Direct

Name: ymdB [C]

Synonym: Noca_0729

Alternate gene names: 119714976

Gene position: 777674-778264 (Clockwise)

Preceding gene: 119714975

Following gene: 119714978

Centisome position: 15.6

GC content: 75.8

Gene sequence:

>591_bases
ATGCCTTCGCCCCGCCGCCTTGCGAGAGCACGCGCTGGACGACGCTCGCGACGGCCGAGACTTGAGAGGCACGCCCTGAT
GGACATCACCGTCGTGCAGGGCGACATCACCCGGCAGGAGGTCGACGCCGTGGTCAACGCCGCGAGCTCGCGGATGCGCG
GCGGTGGCGGGGTGGACGGTGCCATCCACCGGGCCGGCGGGCCGGCGGTGCTCGAGGACTGCGTCCGCCGGTTCCCCGAC
GGGCTGCCGACCGGCGAGGCCGGCTGGACCACCGCGGGCGACCTGCCCGCCCGCTGGGTCATCCACGTCGTCGGCCCGAA
CCACGCCGCCGGCCAGCGGGACCGCTCGCTGCTGCTGTCCTGCTACACCCGCGCGCTGGCCGTCGCCGACGAGCTCGGCG
CGGCCACCCTCGCCTTCCCCCTGGTCTCCGCGGGGATCTACGGCTGGCCCAAGGACGACGCGGTCGCCGCCGCCCTCGAG
GCCCTCCGCTCCGCCGACGCGGCCGGCACCGCCGTCACCGAGGCCCGGATCGTGGCGTTCGATGCGGCGACGTACGAGCT
GGTCCGCGCCGCCCTCCACGTCGAGTCGTGA

Upstream 100 bases:

>100_bases
TCAAGGAGGTATAGGGCGTGTCTCCCAAGTCCATGGCCTGCTGCGCGTCGCCCATCACGCGCTCTCGCTGCGTTGCCGTC
GCTCGACAGACAAGCCCGGT

Downstream 100 bases:

>100_bases
GTCCCGACTCAACGCGTCAGAGGTGGTCGACCACCCAGTCGATGGAGCGGGTGAGGGCCTCGACGTCGGCGGGGTCGACG
GCGGGGTACATCGCGATCCG

Product: appr-1-p processing domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 196; Mature: 195

Protein sequence:

>196_residues
MPSPRRLARARAGRRSRRPRLERHALMDITVVQGDITRQEVDAVVNAASSRMRGGGGVDGAIHRAGGPAVLEDCVRRFPD
GLPTGEAGWTTAGDLPARWVIHVVGPNHAAGQRDRSLLLSCYTRALAVADELGAATLAFPLVSAGIYGWPKDDAVAAALE
ALRSADAAGTAVTEARIVAFDAATYELVRAALHVES

Sequences:

>Translated_196_residues
MPSPRRLARARAGRRSRRPRLERHALMDITVVQGDITRQEVDAVVNAASSRMRGGGGVDGAIHRAGGPAVLEDCVRRFPD
GLPTGEAGWTTAGDLPARWVIHVVGPNHAAGQRDRSLLLSCYTRALAVADELGAATLAFPLVSAGIYGWPKDDAVAAALE
ALRSADAAGTAVTEARIVAFDAATYELVRAALHVES
>Mature_195_residues
PSPRRLARARAGRRSRRPRLERHALMDITVVQGDITRQEVDAVVNAASSRMRGGGGVDGAIHRAGGPAVLEDCVRRFPDG
LPTGEAGWTTAGDLPARWVIHVVGPNHAAGQRDRSLLLSCYTRALAVADELGAATLAFPLVSAGIYGWPKDDAVAAALEA
LRSADAAGTAVTEARIVAFDAATYELVRAALHVES

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain [H]

Homologues:

Organism=Homo sapiens, GI117968621, Length=139, Percent_Identity=44.6043165467626, Blast_Score=120, Evalue=5e-28,
Organism=Homo sapiens, GI13569840, Length=168, Percent_Identity=39.2857142857143, Blast_Score=107, Evalue=6e-24,
Organism=Homo sapiens, GI154813199, Length=140, Percent_Identity=34.2857142857143, Blast_Score=79, Evalue=2e-15,
Organism=Homo sapiens, GI207450721, Length=137, Percent_Identity=30.6569343065693, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI8923143, Length=137, Percent_Identity=30.6569343065693, Blast_Score=73, Evalue=1e-13,
Organism=Escherichia coli, GI1787283, Length=156, Percent_Identity=42.9487179487179, Blast_Score=116, Evalue=1e-27,
Organism=Caenorhabditis elegans, GI17538214, Length=167, Percent_Identity=36.5269461077844, Blast_Score=108, Evalue=1e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002589
- InterPro:   IPR022942 [H]

Pfam domain/function: PF01661 Macro [H]

EC number: NA

Molecular weight: Translated: 20652; Mature: 20520

Theoretical pI: Translated: 8.76; Mature: 8.76

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSPRRLARARAGRRSRRPRLERHALMDITVVQGDITRQEVDAVVNAASSRMRGGGGVDG
CCCHHHHHHHHHHHHHCCCHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCC
AIHRAGGPAVLEDCVRRFPDGLPTGEAGWTTAGDLPARWVIHVVGPNHAAGQRDRSLLLS
HHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHH
CYTRALAVADELGAATLAFPLVSAGIYGWPKDDAVAAALEALRSADAAGTAVTEARIVAF
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHEEEEE
DAATYELVRAALHVES
HHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PSPRRLARARAGRRSRRPRLERHALMDITVVQGDITRQEVDAVVNAASSRMRGGGGVDG
CCHHHHHHHHHHHHHCCCHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCC
AIHRAGGPAVLEDCVRRFPDGLPTGEAGWTTAGDLPARWVIHVVGPNHAAGQRDRSLLLS
HHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHH
CYTRALAVADELGAATLAFPLVSAGIYGWPKDDAVAAALEALRSADAAGTAVTEARIVAF
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHEEEEE
DAATYELVRAALHVES
HHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12000953 [H]