Click here to switch to the map view.

The map label for this gene is ydiS [C]

Identifier: 119714961

GI number: 119714961

Start: 758037

End: 759284

Strand: Direct

Name: ydiS [C]

Synonym: Noca_0714

Alternate gene names: 119714961

Gene position: 758037-759284 (Clockwise)

Preceding gene: 119714960

Following gene: 119714962

Centisome position: 15.2

GC content: 74.44

Gene sequence:

>1248_bases
GTGACCATCCCGACCTCCACCGACGTCCTCGTCGTGGGCGCCGGCCCCGCGGGGTCGGCCGCGGCGGCGTGGGCGGCCCG
CGCCGGGCTGGACGTCGTGCTCGCCGACGCGGCGGTCTTCCCCCGCGACAAGACGTGCGGTGACGGGCTCACGCCGCGGG
CGATCGGCGAGCTGCAGCGACTCGGCCTCGAGGACTGGCTCCGCGCCCACACGGTCAACCAGGGCCTGCGCGCCCACGGC
TTCGGCCAGACCCTCCTGTTGCCCTGGCCGGGTGGCTCCCTGCCCGACTGGGGCTCGGCCGTGGCCCGCACCGAGCTCGA
CGACCACCTGCGGACCGCCGCCATCAAGGCCGGTGCCGTCGCGGTCGACGGGGTCCGCGCGGTGGACGTCCGCCGCGACG
GTGGACAGGTCACCGGTGTCGTCTTCCGGACCGCGACCGGCAACGTCGAGATCGGGTGCCGGCGGCTGGTGGTCGCCGAC
GGGGTCCGTTCCCCACTCGGCAAGGTGCTCGGCCGCGAGTGGCACCGCGAGACCGTGTACGGCGTCGCCGGACGCTCCTA
CGTCGCCTCGGAGCTGTCCGACGACCCGTGGATCAGCTCCCACCTGGAGCTGCGTGGGCAGGACGGCACGGTGCTGTCCG
GCTACGGCTGGATCTTCCCGCTCGGCACCGGCGAGGTGAACCTCGGGGTCGGCACGCTCGCCACCGCGAAGCGGCCGGCG
GACGTGGCGATCAAGCCGCTGATGGCGCACTACGCCGAAGAGCGACGCACCGACTTCAAGCTGTCCGGCGAGCTGCGGAT
GCCGACCTCCGCGCTGCTGCCGATGGGCGGGGCGGTGTCGAACGTCGCCGGTCCGAACTGGGCGCTGATCGGCGACGCAG
CGGCCTGCGTGAACCCGCTCAACGGTGAGGGCATCGACTACGGCCTCGAGACCGGTCGCCTGGTCGCCGAGCTGCTCGCC
GAGCGTCCCGTCGACGCACCGGGCCTTGACGTCGTGTGGCCGGCGCTGCTGCGCGAGCACTACGGCGAGTCGTTCTCGAT
CGCGCGCCGGCTGGCCGGGCTGGTGACGCTCCCGCGGCTGCTACCGACCCTGGGCCCGGCGGGCATGCGCTCGGACTGGC
TGATGACGCTGGCCCTGCGCTGGATGGGCAACCTGGTGACCGACGAGGACCGCGACCGGGCCGCGCGCGTGTGGCGGTGG
GCGGGGCGCCGCTCGATCGCGCTGGACCATCGCCCGCCGTTCGGCTGA

Upstream 100 bases:

>100_bases
GACCGGGTTCACCTGATCACCCACAAGGCCTACCGCCGGCCCTGACTCCGGGCGGGCCGCCGCTTGGGAGGATCGGGTCC
GGGCCTGAGACAATCGCTGG

Downstream 100 bases:

>100_bases
GACGCTGATGGTCGGGCTTCCGAAGCGGCAGCGGGTGGCGGCGTACGCCGTGATCATCCGCGAGGGCCGGATCCTGCTGA
GCCGGCTGTCGCCGAGCATC

Product: geranylgeranyl reductase

Products: NA

Alternate protein names: DGGGPL reductase 1; 2,3-di-O-geranylgeranylglyceryl phosphate reductase 1; Geranylgeranyl reductase 1; GGR 1 [H]

Number of amino acids: Translated: 415; Mature: 414

Protein sequence:

>415_residues
MTIPTSTDVLVVGAGPAGSAAAAWAARAGLDVVLADAAVFPRDKTCGDGLTPRAIGELQRLGLEDWLRAHTVNQGLRAHG
FGQTLLLPWPGGSLPDWGSAVARTELDDHLRTAAIKAGAVAVDGVRAVDVRRDGGQVTGVVFRTATGNVEIGCRRLVVAD
GVRSPLGKVLGREWHRETVYGVAGRSYVASELSDDPWISSHLELRGQDGTVLSGYGWIFPLGTGEVNLGVGTLATAKRPA
DVAIKPLMAHYAEERRTDFKLSGELRMPTSALLPMGGAVSNVAGPNWALIGDAAACVNPLNGEGIDYGLETGRLVAELLA
ERPVDAPGLDVVWPALLREHYGESFSIARRLAGLVTLPRLLPTLGPAGMRSDWLMTLALRWMGNLVTDEDRDRAARVWRW
AGRRSIALDHRPPFG

Sequences:

>Translated_415_residues
MTIPTSTDVLVVGAGPAGSAAAAWAARAGLDVVLADAAVFPRDKTCGDGLTPRAIGELQRLGLEDWLRAHTVNQGLRAHG
FGQTLLLPWPGGSLPDWGSAVARTELDDHLRTAAIKAGAVAVDGVRAVDVRRDGGQVTGVVFRTATGNVEIGCRRLVVAD
GVRSPLGKVLGREWHRETVYGVAGRSYVASELSDDPWISSHLELRGQDGTVLSGYGWIFPLGTGEVNLGVGTLATAKRPA
DVAIKPLMAHYAEERRTDFKLSGELRMPTSALLPMGGAVSNVAGPNWALIGDAAACVNPLNGEGIDYGLETGRLVAELLA
ERPVDAPGLDVVWPALLREHYGESFSIARRLAGLVTLPRLLPTLGPAGMRSDWLMTLALRWMGNLVTDEDRDRAARVWRW
AGRRSIALDHRPPFG
>Mature_414_residues
TIPTSTDVLVVGAGPAGSAAAAWAARAGLDVVLADAAVFPRDKTCGDGLTPRAIGELQRLGLEDWLRAHTVNQGLRAHGF
GQTLLLPWPGGSLPDWGSAVARTELDDHLRTAAIKAGAVAVDGVRAVDVRRDGGQVTGVVFRTATGNVEIGCRRLVVADG
VRSPLGKVLGREWHRETVYGVAGRSYVASELSDDPWISSHLELRGQDGTVLSGYGWIFPLGTGEVNLGVGTLATAKRPAD
VAIKPLMAHYAEERRTDFKLSGELRMPTSALLPMGGAVSNVAGPNWALIGDAAACVNPLNGEGIDYGLETGRLVAELLAE
RPVDAPGLDVVWPALLREHYGESFSIARRLAGLVTLPRLLPTLGPAGMRSDWLMTLALRWMGNLVTDEDRDRAARVWRWA
GRRSIALDHRPPFG

Specific function: Is involved in the reduction of 2,3- digeranylgeranylglycerophospholipids (unsaturated archaeols) into 2,3-diphytanylglycerophospholipids (saturated archaeols) in the biosynthesis of archaeal membrane lipids. Catalyzes the formation of archaetidic acid (2

COG id: COG0644

COG function: function code C; Dehydrogenases (flavoproteins)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the geranylgeranyl reductase family. DGGGPL reductase subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013027
- InterPro:   IPR011777
- InterPro:   IPR003042 [H]

Pfam domain/function: PF07992 Pyr_redox_2 [H]

EC number: 1.5.5.- [C]

Molecular weight: Translated: 44192; Mature: 44061

Theoretical pI: Translated: 6.96; Mature: 6.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIPTSTDVLVVGAGPAGSAAAAWAARAGLDVVLADAAVFPRDKTCGDGLTPRAIGELQR
CCCCCCCCEEEEECCCCCCHHHHHHHHCCCEEEEECCEECCCCCCCCCCCCHHHHHHHHH
LGLEDWLRAHTVNQGLRAHGFGQTLLLPWPGGSLPDWGSAVARTELDDHLRTAAIKAGAV
CCHHHHHHHHHHHCCCHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCE
AVDGVRAVDVRRDGGQVTGVVFRTATGNVEIGCRRLVVADGVRSPLGKVLGREWHRETVY
EECCEEEEEEECCCCCEEEEEEEEECCCEEECEEEEEECCCHHHHHHHHHHHHHHHHHHH
GVAGRSYVASELSDDPWISSHLELRGQDGTVLSGYGWIFPLGTGEVNLGVGTLATAKRPA
HCCCCHHHHHHCCCCCCCCCCEEEECCCCCEEECCCEEEECCCCCEECCCCCHHCCCCCC
DVAIKPLMAHYAEERRTDFKLSGELRMPTSALLPMGGAVSNVAGPNWALIGDAAACVNPL
CHHHHHHHHHHHHHHCCCEEECCCEECCHHHHCCCCCCHHHCCCCCEEEEECHHHHCCCC
NGEGIDYGLETGRLVAELLAERPVDAPGLDVVWPALLREHYGESFSIARRLAGLVTLPRL
CCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
LPTLGPAGMRSDWLMTLALRWMGNLVTDEDRDRAARVWRWAGRRSIALDHRPPFG
HHHCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCC
>Mature Secondary Structure 
TIPTSTDVLVVGAGPAGSAAAAWAARAGLDVVLADAAVFPRDKTCGDGLTPRAIGELQR
CCCCCCCEEEEECCCCCCHHHHHHHHCCCEEEEECCEECCCCCCCCCCCCHHHHHHHHH
LGLEDWLRAHTVNQGLRAHGFGQTLLLPWPGGSLPDWGSAVARTELDDHLRTAAIKAGAV
CCHHHHHHHHHHHCCCHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCE
AVDGVRAVDVRRDGGQVTGVVFRTATGNVEIGCRRLVVADGVRSPLGKVLGREWHRETVY
EECCEEEEEEECCCCCEEEEEEEEECCCEEECEEEEEECCCHHHHHHHHHHHHHHHHHHH
GVAGRSYVASELSDDPWISSHLELRGQDGTVLSGYGWIFPLGTGEVNLGVGTLATAKRPA
HCCCCHHHHHHCCCCCCCCCCEEEECCCCCEEECCCEEEECCCCCEECCCCCHHCCCCCC
DVAIKPLMAHYAEERRTDFKLSGELRMPTSALLPMGGAVSNVAGPNWALIGDAAACVNPL
CHHHHHHHHHHHHHHCCCEEECCCEECCHHHHCCCCCCHHHCCCCCEEEEECHHHHCCCC
NGEGIDYGLETGRLVAELLAERPVDAPGLDVVWPALLREHYGESFSIARRLAGLVTLPRL
CCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
LPTLGPAGMRSDWLMTLALRWMGNLVTDEDRDRAARVWRWAGRRSIALDHRPPFG
HHHCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA