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The map label for this gene is ndoB [H]

Identifier: 119714930

GI number: 119714930

Start: 722695

End: 723969

Strand: Direct

Name: ndoB [H]

Synonym: Noca_0683

Alternate gene names: 119714930

Gene position: 722695-723969 (Clockwise)

Preceding gene: 119714924

Following gene: 119714931

Centisome position: 14.49

GC content: 68.24

Gene sequence:

>1275_bases
TTGACCACTGAGCGGTCGGTCAGCATCCCGCGTTCCTACTACCGCGACCAGGAGGTGCTGGAGCGCGAGCTCGCCACGAT
CTACGGCGAGAACTGGATCTTCATCGGGCACGAGTCCGAGGTCCCCGCCCCCGGCGACTACGTCACCCGCAGCATGGGTG
CGAACCCGGTGATCATGTCGCGGACCGAGGGTGGCGACATCCACGTGATGCTCAACTCGTGCACCCACCGCGGGACCGAG
GTGTGCAAGCTCGCCTACGGCAACACCACGACGTTCCGGTGCGGCTACCACGGCTGGGTCTTCGGCGGCGACGGCGACCT
CAAGGGCGTGCCCGGGCGCCGCTCGCTCTACGGCCCGGACTTCGACCCGTCCCGGCTCGGGCTGCGCAAGGCCCGGGTGG
AGATCTGCTGTGGCCTGGTCTTCGCGACCTGGTCCCCGGACGGCCCGGGCCTCCAGGAGAGCCTCGGCGACATGCTGTGG
TACCTCCAAGGGTTCTTCGAGCTGTTCCCAGGAGGGCTCGAGGTCCACGGCGGCGCCCACACGGTCGACGTCCGCGGGAA
CTGGAAGATCCACGTCGAGAACTTCGCGGGCGACGGCTACCACCTCAAGACCGCGCACAAGACGATGTTCGACCTCGGGG
TGATGGGGACCCAGGCGGGCGCCGTCGAGGGGTTCGTCGTGAACGACCCGCACGGACACTCGCTGCGAGCGCAGTACCTC
GTCGACGAGGGGGTGCCCGGCGTCGTGCTGGGCTACGAGGACGACCTCCTCGCCACGATCGACGCCGATGAGCAGCACCG
GAGGTTCCGGGAGCGGACCACCGTGATCCACGGGATGGTCTATCCGAACCTGCTCTTCATCACGACGGCCCCGCTCTACT
TCGGCACCGACGCCGACGGTGCGGTGGCTTTCACCCAGCTGCGCCAGATCACACCGCTCGACCCACACCGGCACCGCGTC
ACCTACTGGACGCTCGTGCCCAAGGATGCCAGCGCGGACTGGAAGCGCAGGTCCTACCTCTACTCGACCCGTCAGCACGG
TGCCGCCTCGTTCTTCGAGGCGGACGACCTCGAGAACTTCCGTCGGATCGACGCGGGGCTCGGCGACTCGGTCGCCGGCG
TCGTGCCGTTCAACTACGAGCTCGGCGTCGATGTCGGCGAGCGCGCGACGCCGCCGTGGACCGGACCCGGTCGCATCGTC
CGCCAGGACCTAACGGAGGCTAATCAGCGCAACCTGGTCAGGCGCTACCTCGAGCAGATGGAGGCTCGCCGATGA

Upstream 100 bases:

>100_bases
CGCTGCCATCCTCAGCTGCCCGGCGCGTGCGCTCAGCGCCTCGGAATGATCACTCTGGCATCGCCGCCACACCCGAGTCC
CCAGGGGAGAGGAGTTCGTC

Downstream 100 bases:

>100_bases
GCGGCATCTCCGTCGAGCTGCACCGCGAGATCGAGCAGTTCCTGGTCGACGAGGCCGACCTCCTCGACACTCACCGTCAG
GCCGAGTGGCTGGACCTGCT

Product: Rieske (2Fe-2S) domain-containing protein

Products: NA

Alternate protein names: Naphthalene 1,2-dioxygenase ISP alpha [H]

Number of amino acids: Translated: 424; Mature: 423

Protein sequence:

>424_residues
MTTERSVSIPRSYYRDQEVLERELATIYGENWIFIGHESEVPAPGDYVTRSMGANPVIMSRTEGGDIHVMLNSCTHRGTE
VCKLAYGNTTTFRCGYHGWVFGGDGDLKGVPGRRSLYGPDFDPSRLGLRKARVEICCGLVFATWSPDGPGLQESLGDMLW
YLQGFFELFPGGLEVHGGAHTVDVRGNWKIHVENFAGDGYHLKTAHKTMFDLGVMGTQAGAVEGFVVNDPHGHSLRAQYL
VDEGVPGVVLGYEDDLLATIDADEQHRRFRERTTVIHGMVYPNLLFITTAPLYFGTDADGAVAFTQLRQITPLDPHRHRV
TYWTLVPKDASADWKRRSYLYSTRQHGAASFFEADDLENFRRIDAGLGDSVAGVVPFNYELGVDVGERATPPWTGPGRIV
RQDLTEANQRNLVRRYLEQMEARR

Sequences:

>Translated_424_residues
MTTERSVSIPRSYYRDQEVLERELATIYGENWIFIGHESEVPAPGDYVTRSMGANPVIMSRTEGGDIHVMLNSCTHRGTE
VCKLAYGNTTTFRCGYHGWVFGGDGDLKGVPGRRSLYGPDFDPSRLGLRKARVEICCGLVFATWSPDGPGLQESLGDMLW
YLQGFFELFPGGLEVHGGAHTVDVRGNWKIHVENFAGDGYHLKTAHKTMFDLGVMGTQAGAVEGFVVNDPHGHSLRAQYL
VDEGVPGVVLGYEDDLLATIDADEQHRRFRERTTVIHGMVYPNLLFITTAPLYFGTDADGAVAFTQLRQITPLDPHRHRV
TYWTLVPKDASADWKRRSYLYSTRQHGAASFFEADDLENFRRIDAGLGDSVAGVVPFNYELGVDVGERATPPWTGPGRIV
RQDLTEANQRNLVRRYLEQMEARR
>Mature_423_residues
TTERSVSIPRSYYRDQEVLERELATIYGENWIFIGHESEVPAPGDYVTRSMGANPVIMSRTEGGDIHVMLNSCTHRGTEV
CKLAYGNTTTFRCGYHGWVFGGDGDLKGVPGRRSLYGPDFDPSRLGLRKARVEICCGLVFATWSPDGPGLQESLGDMLWY
LQGFFELFPGGLEVHGGAHTVDVRGNWKIHVENFAGDGYHLKTAHKTMFDLGVMGTQAGAVEGFVVNDPHGHSLRAQYLV
DEGVPGVVLGYEDDLLATIDADEQHRRFRERTTVIHGMVYPNLLFITTAPLYFGTDADGAVAFTQLRQITPLDPHRHRVT
YWTLVPKDASADWKRRSYLYSTRQHGAASFFEADDLENFRRIDAGLGDSVAGVVPFNYELGVDVGERATPPWTGPGRIVR
QDLTEANQRNLVRRYLEQMEARR

Specific function: Component of the naphthalene dioxygenase (NDO) multicomponent enzyme system which catalyzes the incorporation of both atoms of molecular oxygen into naphthalene to form cis- naphthalene dihydrodiol [H]

COG id: COG4638

COG function: function code PR; Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Rieske domain [H]

Homologues:

Organism=Escherichia coli, GI1788888, Length=444, Percent_Identity=28.6036036036036, Blast_Score=164, Evalue=1e-41,
Organism=Escherichia coli, GI1788103, Length=212, Percent_Identity=27.3584905660377, Blast_Score=90, Evalue=3e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017941
- InterPro:   IPR015881
- InterPro:   IPR015879
- InterPro:   IPR001663 [H]

Pfam domain/function: PF00355 Rieske; PF00848 Ring_hydroxyl_A [H]

EC number: =1.14.12.12 [H]

Molecular weight: Translated: 47421; Mature: 47290

Theoretical pI: Translated: 6.08; Mature: 6.08

Prosite motif: PS00570 RING_HYDROXYL_ALPHA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTERSVSIPRSYYRDQEVLERELATIYGENWIFIGHESEVPAPGDYVTRSMGANPVIMS
CCCCCCCCCCHHHHCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHCCCCCEEEE
RTEGGDIHVMLNSCTHRGTEVCKLAYGNTTTFRCGYHGWVFGGDGDLKGVPGRRSLYGPD
ECCCCEEEEEEECCCCCCCEEEEEEECCCEEEEECCCEEEEECCCCCCCCCCCCCCCCCC
FDPSRLGLRKARVEICCGLVFATWSPDGPGLQESLGDMLWYLQGFFELFPGGLEVHGGAH
CCHHHHHHHHHHHHHHEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCEE
TVDVRGNWKIHVENFAGDGYHLKTAHKTMFDLGVMGTQAGAVEGFVVNDPHGHSLRAQYL
EEEECCCEEEEEEEECCCCEEEEHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCEEEEEE
VDEGVPGVVLGYEDDLLATIDADEQHRRFRERTTVIHGMVYPNLLFITTAPLYFGTDADG
ECCCCCEEEEECCCCEEEEECCCHHHHHHHHHHHEEEEHHCCCEEEEEECCEEECCCCCC
AVAFTQLRQITPLDPHRHRVTYWTLVPKDASADWKRRSYLYSTRQHGAASFFEADDLENF
HHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHH
RRIDAGLGDSVAGVVPFNYELGVDVGERATPPWTGPGRIVRQDLTEANQRNLVRRYLEQM
HHHHCCCCCCCEEEEECCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
EARR
HHCC
>Mature Secondary Structure 
TTERSVSIPRSYYRDQEVLERELATIYGENWIFIGHESEVPAPGDYVTRSMGANPVIMS
CCCCCCCCCHHHHCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHCCCCCEEEE
RTEGGDIHVMLNSCTHRGTEVCKLAYGNTTTFRCGYHGWVFGGDGDLKGVPGRRSLYGPD
ECCCCEEEEEEECCCCCCCEEEEEEECCCEEEEECCCEEEEECCCCCCCCCCCCCCCCCC
FDPSRLGLRKARVEICCGLVFATWSPDGPGLQESLGDMLWYLQGFFELFPGGLEVHGGAH
CCHHHHHHHHHHHHHHEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCEE
TVDVRGNWKIHVENFAGDGYHLKTAHKTMFDLGVMGTQAGAVEGFVVNDPHGHSLRAQYL
EEEECCCEEEEEEEECCCCEEEEHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCEEEEEE
VDEGVPGVVLGYEDDLLATIDADEQHRRFRERTTVIHGMVYPNLLFITTAPLYFGTDADG
ECCCCCEEEEECCCCEEEEECCCHHHHHHHHHHHEEEEHHCCCEEEEEECCEEECCCCCC
AVAFTQLRQITPLDPHRHRVTYWTLVPKDASADWKRRSYLYSTRQHGAASFFEADDLENF
HHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHH
RRIDAGLGDSVAGVVPFNYELGVDVGERATPPWTGPGRIVRQDLTEANQRNLVRRYLEQM
HHHHCCCCCCCEEEEECCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
EARR
HHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA