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The map label for this gene is ydeP [C]

Identifier: 119714910

GI number: 119714910

Start: 701441

End: 703822

Strand: Direct

Name: ydeP [C]

Synonym: Noca_0662

Alternate gene names: 119714910

Gene position: 701441-703822 (Clockwise)

Preceding gene: 119714908

Following gene: 119714911

Centisome position: 14.07

GC content: 72.04

Gene sequence:

>2382_bases
ATGGGCAGGAGACCTCCGCACCGAGACATCGACGAGCGCGAGCTGGACGTAGACCCGCCCAAGCGCACGGCCGCAGGGGT
GCCGGCGGTCGCGGTCGCGATGAAGCGGGCGGTCGAGCAGATGGGGGTCCGGCGTACGGCGCAGACGCTGCTCAAGCTCA
ACCAGGCGGACGGCTTCGACTGCCAGGGCTGCGCGTGGCCCGACCCGGACCCGAGTCATCGGGCGACGGCGGAGTTCTGC
GAGAACGGCGCCAAGGCCGTGACCGAGGAGGCGACCAGGCGACACCTGCACCGCGGCTTCTTCGCCGCCCACCCGCTCAC
CGAGCTGCGGGAGCGGTCCGACTACTGGCTGGGCCAGCAGGGCCGGATCACCGAGCCGATGGTGCTGCGCGAGGGCGGCA
CCCACTACGAGCCGATCGGCTGGGACGAGGCGTTCGCGACCATCGCCCGGCACCTGCAGGCGCTGGAATCCCCGGACCAG
GCGATCTTCTACACCTCCGGCAAGACCTCCAACGAGGCGGCGTTCGCCTACCAGCTCTTCGTCCGCGCCTTCGGCACCAA
CAACCTGCCCGACTGCTCGAACATGTGCCACGAGTCGACCTCGGTCGCGCTCGCGGAGGTGATCGGCATCGGCAAGGCGT
CGGTCACCATCCGCGACGTGCTCGAGGCCGACCTGATCGTGATCGCCGGGCAGAACCCGGGCACCAACCACCCGCGGATG
CTCACCGCCCTCGAGGGCGCGAAGCGCAACGGCGCCCGGATCATCGCGGTCAACCCGCTCAAGGAGGCGGGCCTGGTCCG
GTTCAAGAACCCGCAGCGACCGCGCGGCATCGTCGGCCACGGCACCGAGCTCGCCGACCTGCACCTGCCGCTGCGGATCA
ACGGCGACCTCGCGCTGTTCCAGGCGATCGGCGCGCTGCTGCTGGAGTGGGGCTGCGTCGACCACGAGTTCGTCGACCGC
CACACCTGGGGCTTCGAGGCCTGGGCCGAGCACCTGCGCACGCTGGACTGGGACGTTGTCCGCCGGTCCACCGGGCTGAC
GCGCGAGCAGATCGAAGAAGCCGCGCGGATGTTCCGCGACTCGCGCGCGACGGTGATCTGCTGGGCGATGGGGATCACGC
AGCACCGCAACGCGGTCGCGACCGTCAAGGAGTTCGCGAACGTCGCGTTCCTCCAGGGCAACATCGGCAGGCCCGGCGCC
GGGCTGTTCCCGGTGCGCGGCCACTCCAACGTCCAGGGCGACCGCACCATGGGGATCTGGGAGCGCCCGCCCGGCCACTT
CCTCGACAAGCTGCGCGACGAGTTCGGGTTCGAGCCGCCGCGCGAGCACGGGTTCGACAGCGTGGCCGCGATCAAGGCCC
TGCGCGACGGCGACGCCAAGGTGTTCTTCGGCCTCGGCGGCAACTTCGTCTCGGCCGCGCCGGACACCGAGGTCACCGAG
GAGGCGTTCCGCCGCGCCGCGCTGACCGTGCACGTGTCGACCAAGCTGAACCGGTCGCACGTCGTGCACGGCCGGGAGGC
GCTGATCCTGCCGGCGCTCGGGCGCAGCGAGAAGGACCTCACCGGCGGCCGGGTGCAGCGGGTCACCGTCGAGGACAGCA
CCTGTTCGGTGCACGCCTCGCAGGGTCCGCTCGAGCCGGCCTCGCCGTACCTGCGCTCGGAGGTCGACATCGTCTGCTCC
CTGGCGCAGGCCGTGCTGGGCGACCGCTACGGCCTGCCCTGGCAGGAGTTCCGCGCCGACTACACCGAGATCCGGCGCCG
GATCGCGCGGGTGGTGCCGGGCTGCGCGGCGTACGACGAGAAGGTGGACCGCCCCGGTGGCTTCGTGCTGCCGCACCCGC
CGCGGGACAGCCGGACCTTCCCCACCGAGAAGGACCGCGCGATCTTCACGGTCAGCCCCACGACGGTCCTCGAGGTGCCG
GAAGGCCGGCTGCTGCTGCAGACCCTGCGCTCCCACGACCAGTTCAACACCACGATCTACGGCCTCGACGACCGCTACCG
CGGCATCTCCGGCGGCCGGCGGGTGGTGTTCGTGCACGCCGACGACATCGCCGCCCTCGGGCTCGAGGAGGGCGAGCACG
TCGACCTGGTCAGCGAGTGGGAGGACGGCTCGCAGCGCCGGGCGCCGTCGTTCCGCGTGGTCGCCTACGACACCCCGCGC
GGCTGCGCGGCGGCGTACTACCCCGAGACGAACCCGCTGGTCCCGCTCGACTCGACGGCCGAGGGCAGCAACTGCCCGAC
CTCGAAGTCCGTGGTCGTGCGGCTGGACCGGGCCGACGGCGGGCCGCAGGGCGTCACCGCCGGCAGCGACGTCGGCACGA
TCACCCCGGCCGGACGGGGCGACGAGGGCAAGCGGCACGTGGAGCCGGAGCACCTGAGCTGA

Upstream 100 bases:

>100_bases
CAGGCTCAACCGGACTATTGGCAACGGCCCGAACAGGCATCCGAGCCACGGGTCCGGGTACCGCTTCCCCGGCGGCGACC
GCGGCGACAGGATGGGGCAC

Downstream 100 bases:

>100_bases
GACGCTTTCTATGGGGTTGACACCCCCTAGAAGCGTCTCAGGCGCGGCACAATGGGGCGATGAGCAACCTCGAGGACCGG
CCCGACGAGGTCGACGGCGC

Product: oxidoreductase alpha (molybdopterin) subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 793; Mature: 792

Protein sequence:

>793_residues
MGRRPPHRDIDERELDVDPPKRTAAGVPAVAVAMKRAVEQMGVRRTAQTLLKLNQADGFDCQGCAWPDPDPSHRATAEFC
ENGAKAVTEEATRRHLHRGFFAAHPLTELRERSDYWLGQQGRITEPMVLREGGTHYEPIGWDEAFATIARHLQALESPDQ
AIFYTSGKTSNEAAFAYQLFVRAFGTNNLPDCSNMCHESTSVALAEVIGIGKASVTIRDVLEADLIVIAGQNPGTNHPRM
LTALEGAKRNGARIIAVNPLKEAGLVRFKNPQRPRGIVGHGTELADLHLPLRINGDLALFQAIGALLLEWGCVDHEFVDR
HTWGFEAWAEHLRTLDWDVVRRSTGLTREQIEEAARMFRDSRATVICWAMGITQHRNAVATVKEFANVAFLQGNIGRPGA
GLFPVRGHSNVQGDRTMGIWERPPGHFLDKLRDEFGFEPPREHGFDSVAAIKALRDGDAKVFFGLGGNFVSAAPDTEVTE
EAFRRAALTVHVSTKLNRSHVVHGREALILPALGRSEKDLTGGRVQRVTVEDSTCSVHASQGPLEPASPYLRSEVDIVCS
LAQAVLGDRYGLPWQEFRADYTEIRRRIARVVPGCAAYDEKVDRPGGFVLPHPPRDSRTFPTEKDRAIFTVSPTTVLEVP
EGRLLLQTLRSHDQFNTTIYGLDDRYRGISGGRRVVFVHADDIAALGLEEGEHVDLVSEWEDGSQRRAPSFRVVAYDTPR
GCAAAYYPETNPLVPLDSTAEGSNCPTSKSVVVRLDRADGGPQGVTAGSDVGTITPAGRGDEGKRHVEPEHLS

Sequences:

>Translated_793_residues
MGRRPPHRDIDERELDVDPPKRTAAGVPAVAVAMKRAVEQMGVRRTAQTLLKLNQADGFDCQGCAWPDPDPSHRATAEFC
ENGAKAVTEEATRRHLHRGFFAAHPLTELRERSDYWLGQQGRITEPMVLREGGTHYEPIGWDEAFATIARHLQALESPDQ
AIFYTSGKTSNEAAFAYQLFVRAFGTNNLPDCSNMCHESTSVALAEVIGIGKASVTIRDVLEADLIVIAGQNPGTNHPRM
LTALEGAKRNGARIIAVNPLKEAGLVRFKNPQRPRGIVGHGTELADLHLPLRINGDLALFQAIGALLLEWGCVDHEFVDR
HTWGFEAWAEHLRTLDWDVVRRSTGLTREQIEEAARMFRDSRATVICWAMGITQHRNAVATVKEFANVAFLQGNIGRPGA
GLFPVRGHSNVQGDRTMGIWERPPGHFLDKLRDEFGFEPPREHGFDSVAAIKALRDGDAKVFFGLGGNFVSAAPDTEVTE
EAFRRAALTVHVSTKLNRSHVVHGREALILPALGRSEKDLTGGRVQRVTVEDSTCSVHASQGPLEPASPYLRSEVDIVCS
LAQAVLGDRYGLPWQEFRADYTEIRRRIARVVPGCAAYDEKVDRPGGFVLPHPPRDSRTFPTEKDRAIFTVSPTTVLEVP
EGRLLLQTLRSHDQFNTTIYGLDDRYRGISGGRRVVFVHADDIAALGLEEGEHVDLVSEWEDGSQRRAPSFRVVAYDTPR
GCAAAYYPETNPLVPLDSTAEGSNCPTSKSVVVRLDRADGGPQGVTAGSDVGTITPAGRGDEGKRHVEPEHLS
>Mature_792_residues
GRRPPHRDIDERELDVDPPKRTAAGVPAVAVAMKRAVEQMGVRRTAQTLLKLNQADGFDCQGCAWPDPDPSHRATAEFCE
NGAKAVTEEATRRHLHRGFFAAHPLTELRERSDYWLGQQGRITEPMVLREGGTHYEPIGWDEAFATIARHLQALESPDQA
IFYTSGKTSNEAAFAYQLFVRAFGTNNLPDCSNMCHESTSVALAEVIGIGKASVTIRDVLEADLIVIAGQNPGTNHPRML
TALEGAKRNGARIIAVNPLKEAGLVRFKNPQRPRGIVGHGTELADLHLPLRINGDLALFQAIGALLLEWGCVDHEFVDRH
TWGFEAWAEHLRTLDWDVVRRSTGLTREQIEEAARMFRDSRATVICWAMGITQHRNAVATVKEFANVAFLQGNIGRPGAG
LFPVRGHSNVQGDRTMGIWERPPGHFLDKLRDEFGFEPPREHGFDSVAAIKALRDGDAKVFFGLGGNFVSAAPDTEVTEE
AFRRAALTVHVSTKLNRSHVVHGREALILPALGRSEKDLTGGRVQRVTVEDSTCSVHASQGPLEPASPYLRSEVDIVCSL
AQAVLGDRYGLPWQEFRADYTEIRRRIARVVPGCAAYDEKVDRPGGFVLPHPPRDSRTFPTEKDRAIFTVSPTTVLEVPE
GRLLLQTLRSHDQFNTTIYGLDDRYRGISGGRRVVFVHADDIAALGLEEGEHVDLVSEWEDGSQRRAPSFRVVAYDTPRG
CAAAYYPETNPLVPLDSTAEGSNCPTSKSVVVRLDRADGGPQGVTAGSDVGTITPAGRGDEGKRHVEPEHLS

Specific function: Unknown

COG id: COG0243

COG function: function code C; Anaerobic dehydrogenases, typically selenocysteine-containing

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the prokaryotic molybdopterin-containing oxidoreductase family [H]

Homologues:

Organism=Escherichia coli, GI1787778, Length=748, Percent_Identity=42.2459893048128, Blast_Score=601, Evalue=1e-173,
Organism=Escherichia coli, GI3868721, Length=302, Percent_Identity=34.1059602649007, Blast_Score=180, Evalue=4e-46,
Organism=Escherichia coli, GI3868719, Length=527, Percent_Identity=18.9753320683112, Blast_Score=93, Evalue=8e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009010
- InterPro:   IPR006657
- InterPro:   IPR006656
- InterPro:   IPR010046 [H]

Pfam domain/function: PF00384 Molybdopterin; PF01568 Molydop_binding [H]

EC number: NA

Molecular weight: Translated: 87191; Mature: 87060

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS00075 DHFR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGRRPPHRDIDERELDVDPPKRTAAGVPAVAVAMKRAVEQMGVRRTAQTLLKLNQADGFD
CCCCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
CQGCAWPDPDPSHRATAEFCENGAKAVTEEATRRHLHRGFFAAHPLTELRERSDYWLGQQ
CCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCC
GRITEPMVLREGGTHYEPIGWDEAFATIARHLQALESPDQAIFYTSGKTSNEAAFAYQLF
CCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHH
VRAFGTNNLPDCSNMCHESTSVALAEVIGIGKASVTIRDVLEADLIVIAGQNPGTNHPRM
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCEEEEECCCCCCCCCEE
LTALEGAKRNGARIIAVNPLKEAGLVRFKNPQRPRGIVGHGTELADLHLPLRINGDLALF
EEEHHCCCCCCCEEEEECCCCCCCEEEECCCCCCCCEECCCCEEEEEEEEEEECCCHHHH
QAIGALLLEWGCVDHEFVDRHTWGFEAWAEHLRTLDWDVVRRSTGLTREQIEEAARMFRD
HHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHC
SRATVICWAMGITQHRNAVATVKEFANVAFLQGNIGRPGAGLFPVRGHSNVQGDRTMGIW
CCCEEEEEEECCHHCCHHHHHHHHHHCEEEEECCCCCCCCCEEEECCCCCCCCCCEECCC
ERPPGHFLDKLRDEFGFEPPREHGFDSVAAIKALRDGDAKVFFGLGGNFVSAAPDTEVTE
CCCCHHHHHHHHHHHCCCCCHHCCCHHHHHHHHHCCCCCEEEEECCCCEECCCCCCHHHH
EAFRRAALTVHVSTKLNRSHVVHGREALILPALGRSEKDLTGGRVQRVTVEDSTCSVHAS
HHHHHEEEEEEEECCCCCHHEECCCCEEEEECCCCCCCCCCCCEEEEEEEECCCEEEECC
QGPLEPASPYLRSEVDIVCSLAQAVLGDRYGLPWQEFRADYTEIRRRIARVVPGCAAYDE
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHCCCHHHHHH
KVDRPGGFVLPHPPRDSRTFPTEKDRAIFTVSPTTVLEVPEGRLLLQTLRSHDQFNTTIY
HCCCCCCEECCCCCCCCCCCCCCCCCEEEEECCCEEEECCCCHHHHHHHHCCCCCCCEEE
GLDDRYRGISGGRRVVFVHADDIAALGLEEGEHVDLVSEWEDGSQRRAPSFRVVAYDTPR
ECCHHHCCCCCCCEEEEEECCCEEEECCCCCCCEEEHHHCCCCCCCCCCCEEEEEEECCC
GCAAAYYPETNPLVPLDSTAEGSNCPTSKSVVVRLDRADGGPQGVTAGSDVGTITPAGRG
CCEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCC
DEGKRHVEPEHLS
CCCCCCCCCCCCC
>Mature Secondary Structure 
GRRPPHRDIDERELDVDPPKRTAAGVPAVAVAMKRAVEQMGVRRTAQTLLKLNQADGFD
CCCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
CQGCAWPDPDPSHRATAEFCENGAKAVTEEATRRHLHRGFFAAHPLTELRERSDYWLGQQ
CCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCC
GRITEPMVLREGGTHYEPIGWDEAFATIARHLQALESPDQAIFYTSGKTSNEAAFAYQLF
CCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHH
VRAFGTNNLPDCSNMCHESTSVALAEVIGIGKASVTIRDVLEADLIVIAGQNPGTNHPRM
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCEEEEECCCCCCCCCEE
LTALEGAKRNGARIIAVNPLKEAGLVRFKNPQRPRGIVGHGTELADLHLPLRINGDLALF
EEEHHCCCCCCCEEEEECCCCCCCEEEECCCCCCCCEECCCCEEEEEEEEEEECCCHHHH
QAIGALLLEWGCVDHEFVDRHTWGFEAWAEHLRTLDWDVVRRSTGLTREQIEEAARMFRD
HHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHC
SRATVICWAMGITQHRNAVATVKEFANVAFLQGNIGRPGAGLFPVRGHSNVQGDRTMGIW
CCCEEEEEEECCHHCCHHHHHHHHHHCEEEEECCCCCCCCCEEEECCCCCCCCCCEECCC
ERPPGHFLDKLRDEFGFEPPREHGFDSVAAIKALRDGDAKVFFGLGGNFVSAAPDTEVTE
CCCCHHHHHHHHHHHCCCCCHHCCCHHHHHHHHHCCCCCEEEEECCCCEECCCCCCHHHH
EAFRRAALTVHVSTKLNRSHVVHGREALILPALGRSEKDLTGGRVQRVTVEDSTCSVHAS
HHHHHEEEEEEEECCCCCHHEECCCCEEEEECCCCCCCCCCCCEEEEEEEECCCEEEECC
QGPLEPASPYLRSEVDIVCSLAQAVLGDRYGLPWQEFRADYTEIRRRIARVVPGCAAYDE
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHCCCHHHHHH
KVDRPGGFVLPHPPRDSRTFPTEKDRAIFTVSPTTVLEVPEGRLLLQTLRSHDQFNTTIY
HCCCCCCEECCCCCCCCCCCCCCCCCEEEEECCCEEEECCCCHHHHHHHHCCCCCCCEEE
GLDDRYRGISGGRRVVFVHADDIAALGLEEGEHVDLVSEWEDGSQRRAPSFRVVAYDTPR
ECCHHHCCCCCCCEEEEEECCCEEEECCCCCCCEEEHHHCCCCCCCCCCCEEEEEEECCC
GCAAAYYPETNPLVPLDSTAEGSNCPTSKSVVVRLDRADGGPQGVTAGSDVGTITPAGRG
CCEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCC
DEGKRHVEPEHLS
CCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]