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The map label for this gene is ybhR [H]

Identifier: 119714743

GI number: 119714743

Start: 509714

End: 510451

Strand: Direct

Name: ybhR [H]

Synonym: Noca_0479

Alternate gene names: 119714743

Gene position: 509714-510451 (Clockwise)

Preceding gene: 119714742

Following gene: 119714744

Centisome position: 10.22

GC content: 69.51

Gene sequence:

>738_bases
ATGAACGCCCGGATCACCCTCGCCGTCGCCGGACGCGTCCTGATCCAGCTGCGTCGCGACCACCGCACGCTCGCCATGCT
GCTGGTGCTGCCCTGCCTGCTCATCTCCTTGATGTGGTGGATGTACGACGAGGCGAACCCGCTGCTCTTCGACCGCATCG
GGCCCGCGTTGCTCGCGATGTTCCCCGTGATCGTGATGTTCCTGGTCACCAGCGTCACCACGCTCCGGGAGCGCTCCAGC
GGCACCCTCGAGCGGCTGCTCGCGATGCCGATGGGCAAGCTCGACTTCCTGGTGGGCTACGCGATCGCGTTCGGCCTGGT
CGCCGCCGTGCAGTCGGTACTCGCCGTCGCCGTCAGCATCGGGCTGCTCGACCTCGACCTCGAGGGCCCGGTCTGGCTGC
TGACCGTCGTCGCCGTGGTCGACGCCGTCCTGGGCAGCGCCCTGGGCCTGTTCGTCTCCGCGTTCGCGCAGACCGAGTTC
CAGGCCGTCCAGTTCATGCCCGCCATCGTGATCCCCCAGCTGCTGCTGTGCGGGCTCCTGGTGCCGCGTGAGCTGCTGCC
CGACGTGCTGCGTCAGCTCAGCGACGTGCTCCCGCTGTCGTACGCCGTCGATGCGATGCAGCACCTGACCACGAGCTCCG
CCACCGGCCAGGTCTGGCGAGACGTCGCGATCGTGGGCGCGTTCGCCGTCGCGGGACTGGCGTTCGGGGCGGCCACGCTG
CGTCGTCGTACTCCCTGA

Upstream 100 bases:

>100_bases
TTCCTCGCGCTGGTCAGGAGGGACGCGGCATGAACTCACCCCACGAACTCGCGCCTTCCCCCGCTGCGCTCCTCCGGTCA
CGACTTCCCGGGGGCCCCGA

Downstream 100 bases:

>100_bases
TCCTGGCTGACCCTTGGCTGACCCTGGCCCGAGGTGGCCCCGGGACGGCCCTAGGCCGGCCTCGTCGTAGCCTGAGGTCA
TGTCGCTCCTCCGTCAGCCG

Product: ABC transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 245; Mature: 245

Protein sequence:

>245_residues
MNARITLAVAGRVLIQLRRDHRTLAMLLVLPCLLISLMWWMYDEANPLLFDRIGPALLAMFPVIVMFLVTSVTTLRERSS
GTLERLLAMPMGKLDFLVGYAIAFGLVAAVQSVLAVAVSIGLLDLDLEGPVWLLTVVAVVDAVLGSALGLFVSAFAQTEF
QAVQFMPAIVIPQLLLCGLLVPRELLPDVLRQLSDVLPLSYAVDAMQHLTTSSATGQVWRDVAIVGAFAVAGLAFGAATL
RRRTP

Sequences:

>Translated_245_residues
MNARITLAVAGRVLIQLRRDHRTLAMLLVLPCLLISLMWWMYDEANPLLFDRIGPALLAMFPVIVMFLVTSVTTLRERSS
GTLERLLAMPMGKLDFLVGYAIAFGLVAAVQSVLAVAVSIGLLDLDLEGPVWLLTVVAVVDAVLGSALGLFVSAFAQTEF
QAVQFMPAIVIPQLLLCGLLVPRELLPDVLRQLSDVLPLSYAVDAMQHLTTSSATGQVWRDVAIVGAFAVAGLAFGAATL
RRRTP
>Mature_245_residues
MNARITLAVAGRVLIQLRRDHRTLAMLLVLPCLLISLMWWMYDEANPLLFDRIGPALLAMFPVIVMFLVTSVTTLRERSS
GTLERLLAMPMGKLDFLVGYAIAFGLVAAVQSVLAVAVSIGLLDLDLEGPVWLLTVVAVVDAVLGSALGLFVSAFAQTEF
QAVQFMPAIVIPQLLLCGLLVPRELLPDVLRQLSDVLPLSYAVDAMQHLTTSSATGQVWRDVAIVGAFAVAGLAFGAATL
RRRTP

Specific function: Unknown

COG id: COG0842

COG function: function code V; ABC-type multidrug transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

Organism=Escherichia coli, GI1787010, Length=161, Percent_Identity=27.9503105590062, Blast_Score=71, Evalue=7e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013526
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 26452; Mature: 26452

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HCCCC
>Mature Secondary Structure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HCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]