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The map label for this gene is radA [H]

Identifier: 119714734

GI number: 119714734

Start: 501369

End: 502787

Strand: Reverse

Name: radA [H]

Synonym: Noca_0470

Alternate gene names: 119714734

Gene position: 502787-501369 (Counterclockwise)

Preceding gene: 119714736

Following gene: 119714733

Centisome position: 10.08

GC content: 74.63

Gene sequence:

>1419_bases
ATGGCGAAGTCCCCCCACCCCGCGTTCCGCTGCTCCGAGTGCGGCTGGGAGACCGCGAAGTGGGTGGGCCGGTGCGGGGA
GTGCCAGGCCTGGGGCTCGGTCGCGGAGGCGGCGGCGGTGCCCGTCGGCCGTACGCCGGCGACGCCGGTGTCGCGCCCGG
CGGTCCCGATCGCGCAGGTGTCCGTGGAGGACTCCCGGTTCCGGACCAGTGGCGTGCCCGAGCTCGACCGGGTCCTCGGC
GGCGGCCTGGTGCCCGGGGCGGCGATCCTGCTCGCGGGCGAGCCCGGCGTCGGCAAGAGCACGCTGCTGCTGGAGGTGGC
CGCCCAGACCGCGCGCTACCAGCGCCGCACCCTCTACGTCACCGGCGAGGAGTCGGCCTCCCAGGTGCGACTGCGAGCCG
ACCGGACGGGCGGGGTCCACGACGAGCTCTACCTCGCCGCCGAGACCGACCTGGGCGCGGTGCTGACGCACATCGAGGAG
GTGCGGCCGACGCTGCTGGTGGTCGACTCGATCCAGACCATCGGCGCCGCGGGGGTCGACGGCGTCCCGGGCGGCGTCAC
CCAGGTGAAGGAGGTGGCCGCCGCGCTGGTCCGGGTCGCCAAGACCCGCAACATCACCACCGTGATCGTGGGGCACGTGA
CCAAGGACGGCTCGATCGCGGGTCCTCGGGTGCTCGAGCACGTCGTCGACGTCGTCCTGCACTTCGAGGGCGACCGCGAG
TCGCGGTTCCGGATGGTCCGTGCGATGAAGAACCGGTTCGGGCCGGTCGACGAGGTCGGCTGCTTCGACCTGGGCCCCGA
GGGCATCACCGCGGTCACCGACCCGACCGGGGTGTTCGTCGAGAGCCACCACTCCCGGGTGCCGGGGACCTGCGTCGCGG
TGACCATGGAGGGCCGGCGCCCGCTCCTGGCCGAGGTGCAGGCACTCGTGACGCACACCTCCGCCGAGCGGCCGCGCCGG
ACCACGTCGGGCCTGGACTCCAGCCGGGTCGCGATGGTGATGGCGGTCCTCCAACAGCACTGCGGGGTCCACCTCCACAC
CCGGGACGTGTTCGCCTCGACCGTCGGGGGCGCCCGGATCACCGAGCCCGCCAGCGACCTCGCCGCGGCGGTCGCCCTCA
CCTCCGCGAGCCGCGGCTTGGCGGCCCCCCGCGGCGTGGTCGCCATCGGTGAGATCGGGCTCTCCGGCGAGCTGCGCCGG
GTCCGCGACCTGCCGCTGCGGCTGGCCGAGGCCGCCCGCCTGGGGTTCCAGTTGGCGGTGGTCCCGACCGAGCCGGGCCG
GCCGGCGGTCCGCTCCCCGGAGTCGTGGACGGTCGACGGCATGCAGGTCCTCGACGTGACCGACGTCGGCGGAGCACTGC
GACTTCTCCGGCTGCTCGACACCGAGCACGAGAAGCCGCGTTCGATCGAGGGCCGGTAG

Upstream 100 bases:

>100_bases
CGTCCACAGCCGGCCCACCCGCTCGCCCCCGGTCCCGCTCACTCCCGGGCCGCCGCGCGTCGCCGGAGGCGATGTCGGTG
CCGCCGCCTAGGTTCGTCCC

Downstream 100 bases:

>100_bases
CGGTCGAAGGCTGGTAAGAGCCTGCCCTAGACTCGACCCAGCGGCCGACCGGTGCCGCACGCACAGGAGGGACCGGCAGG
TGGCCACCGATCGCTCGGAC

Product: DNA repair protein RadA

Products: NA

Alternate protein names: DNA repair protein sms homolog [H]

Number of amino acids: Translated: 472; Mature: 471

Protein sequence:

>472_residues
MAKSPHPAFRCSECGWETAKWVGRCGECQAWGSVAEAAAVPVGRTPATPVSRPAVPIAQVSVEDSRFRTSGVPELDRVLG
GGLVPGAAILLAGEPGVGKSTLLLEVAAQTARYQRRTLYVTGEESASQVRLRADRTGGVHDELYLAAETDLGAVLTHIEE
VRPTLLVVDSIQTIGAAGVDGVPGGVTQVKEVAAALVRVAKTRNITTVIVGHVTKDGSIAGPRVLEHVVDVVLHFEGDRE
SRFRMVRAMKNRFGPVDEVGCFDLGPEGITAVTDPTGVFVESHHSRVPGTCVAVTMEGRRPLLAEVQALVTHTSAERPRR
TTSGLDSSRVAMVMAVLQQHCGVHLHTRDVFASTVGGARITEPASDLAAAVALTSASRGLAAPRGVVAIGEIGLSGELRR
VRDLPLRLAEAARLGFQLAVVPTEPGRPAVRSPESWTVDGMQVLDVTDVGGALRLLRLLDTEHEKPRSIEGR

Sequences:

>Translated_472_residues
MAKSPHPAFRCSECGWETAKWVGRCGECQAWGSVAEAAAVPVGRTPATPVSRPAVPIAQVSVEDSRFRTSGVPELDRVLG
GGLVPGAAILLAGEPGVGKSTLLLEVAAQTARYQRRTLYVTGEESASQVRLRADRTGGVHDELYLAAETDLGAVLTHIEE
VRPTLLVVDSIQTIGAAGVDGVPGGVTQVKEVAAALVRVAKTRNITTVIVGHVTKDGSIAGPRVLEHVVDVVLHFEGDRE
SRFRMVRAMKNRFGPVDEVGCFDLGPEGITAVTDPTGVFVESHHSRVPGTCVAVTMEGRRPLLAEVQALVTHTSAERPRR
TTSGLDSSRVAMVMAVLQQHCGVHLHTRDVFASTVGGARITEPASDLAAAVALTSASRGLAAPRGVVAIGEIGLSGELRR
VRDLPLRLAEAARLGFQLAVVPTEPGRPAVRSPESWTVDGMQVLDVTDVGGALRLLRLLDTEHEKPRSIEGR
>Mature_471_residues
AKSPHPAFRCSECGWETAKWVGRCGECQAWGSVAEAAAVPVGRTPATPVSRPAVPIAQVSVEDSRFRTSGVPELDRVLGG
GLVPGAAILLAGEPGVGKSTLLLEVAAQTARYQRRTLYVTGEESASQVRLRADRTGGVHDELYLAAETDLGAVLTHIEEV
RPTLLVVDSIQTIGAAGVDGVPGGVTQVKEVAAALVRVAKTRNITTVIVGHVTKDGSIAGPRVLEHVVDVVLHFEGDRES
RFRMVRAMKNRFGPVDEVGCFDLGPEGITAVTDPTGVFVESHHSRVPGTCVAVTMEGRRPLLAEVQALVTHTSAERPRRT
TSGLDSSRVAMVMAVLQQHCGVHLHTRDVFASTVGGARITEPASDLAAAVALTSASRGLAAPRGVVAIGEIGLSGELRRV
RDLPLRLAEAARLGFQLAVVPTEPGRPAVRSPESWTVDGMQVLDVTDVGGALRLLRLLDTEHEKPRSIEGR

Specific function: May play a role in the repair of endogenous alkylation damage [H]

COG id: COG1066

COG function: function code O; Predicted ATP-dependent serine protease

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recA family. RadA subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790850, Length=466, Percent_Identity=43.1330472103004, Blast_Score=374, Evalue=1e-105,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR014774
- InterPro:   IPR004504
- InterPro:   IPR008269
- InterPro:   IPR020568 [H]

Pfam domain/function: PF06745 KaiC; PF05362 Lon_C [H]

EC number: NA

Molecular weight: Translated: 49900; Mature: 49768

Theoretical pI: Translated: 7.16; Mature: 7.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKSPHPAFRCSECGWETAKWVGRCGECQAWGSVAEAAAVPVGRTPATPVSRPAVPIAQV
CCCCCCCCCEEHHCCCHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEE
SVEDSRFRTSGVPELDRVLGGGLVPGAAILLAGEPGVGKSTLLLEVAAQTARYQRRTLYV
EECCCCCCCCCCCHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCEEEEEE
TGEESASQVRLRADRTGGVHDELYLAAETDLGAVLTHIEEVRPTLLVVDSIQTIGAAGVD
ECCCCCCEEEEEECCCCCCCCEEEEEECCCHHHHHHHHHHHCCEEEEEECHHHHCCCCCC
GVPGGVTQVKEVAAALVRVAKTRNITTVIVGHVTKDGSIAGPRVLEHVVDVVLHFEGDRE
CCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCHH
SRFRMVRAMKNRFGPVDEVGCFDLGPEGITAVTDPTGVFVESHHSRVPGTCVAVTMEGRR
HHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCEEEECCCCCCCCEEEEEEECCCC
PLLAEVQALVTHTSAERPRRTTSGLDSSRVAMVMAVLQQHCGVHLHTRDVFASTVGGARI
CHHHHHHHHHHHCCCCCCCHHHCCCCHHHHHHHHHHHHHHCCEEEEEHHHHHHHCCCCEE
TEPASDLAAAVALTSASRGLAAPRGVVAIGEIGLSGELRRVRDLPLRLAEAARLGFQLAV
CCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCEEEEE
VPTEPGRPAVRSPESWTVDGMQVLDVTDVGGALRLLRLLDTEHEKPRSIEGR
EECCCCCCCCCCCCCCEECCEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
AKSPHPAFRCSECGWETAKWVGRCGECQAWGSVAEAAAVPVGRTPATPVSRPAVPIAQV
CCCCCCCCEEHHCCCHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEE
SVEDSRFRTSGVPELDRVLGGGLVPGAAILLAGEPGVGKSTLLLEVAAQTARYQRRTLYV
EECCCCCCCCCCCHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCEEEEEE
TGEESASQVRLRADRTGGVHDELYLAAETDLGAVLTHIEEVRPTLLVVDSIQTIGAAGVD
ECCCCCCEEEEEECCCCCCCCEEEEEECCCHHHHHHHHHHHCCEEEEEECHHHHCCCCCC
GVPGGVTQVKEVAAALVRVAKTRNITTVIVGHVTKDGSIAGPRVLEHVVDVVLHFEGDRE
CCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCHH
SRFRMVRAMKNRFGPVDEVGCFDLGPEGITAVTDPTGVFVESHHSRVPGTCVAVTMEGRR
HHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCEEEECCCCCCCCEEEEEEECCCC
PLLAEVQALVTHTSAERPRRTTSGLDSSRVAMVMAVLQQHCGVHLHTRDVFASTVGGARI
CHHHHHHHHHHHCCCCCCCHHHCCCCHHHHHHHHHHHHHHCCEEEEEHHHHHHHCCCCEE
TEPASDLAAAVALTSASRGLAAPRGVVAIGEIGLSGELRRVRDLPLRLAEAARLGFQLAV
CCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCEEEEE
VPTEPGRPAVRSPESWTVDGMQVLDVTDVGGALRLLRLLDTEHEKPRSIEGR
EECCCCCCCCCCCCCCEECCEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]