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The map label for this gene is clpC [H]

Identifier: 119714730

GI number: 119714730

Start: 495691

End: 498276

Strand: Direct

Name: clpC [H]

Synonym: Noca_0466

Alternate gene names: 119714730

Gene position: 495691-498276 (Clockwise)

Preceding gene: 119714729

Following gene: 119714732

Centisome position: 9.94

GC content: 68.64

Gene sequence:

>2586_bases
ATGTTCGAGCGGTTCACTGACCGAGCCCGCCGGGTGGTCGTGCTGGCCCAGGAAGAGGCCCGCATGCTCTCCCACAACTA
CATCGGCACCGAGCACATCCTGCTCGGCCTCATCCACGAGGGCGAGGGTGTGGCCGCGAAGGCTCTCGAGAGCCTGGACA
TCTCGCTCGAGGCGGTCCGGGCCCAGGTGGAGGAGATCATCGGCCAGGGCCAGCAGGCCCCGAGCGGGCACATCCCGTTC
ACCCCGCGCGCCAAGAAGGTGCTCGAGCTGTCCCTGCGTGAGGCGCTCCAGCTCGGCCACTCCTACATCGGCACCGAGCA
CATCCTGCTCGGCCTGATCCGTGAGGGTGAGGGCGTCGCCGCCCAGGTGCTGCAGAAGCTCGGCGCCGACCTGAACCGGG
TCCGCCAGCAGGTCATCCAGCTGCTCTCGGGCTTCCAGGGCAAGGAGTCGGCGGGATCCGCCGCGGCCACCGGCGCCTCC
GGCGGCGACGCGCCGTCCTCCTCGCTGGTGCTCGACCAGTTCGGCCGCAACCTCACCCAGGACGCGCGCGAGGGCAAGCT
GGACCCGGTCATCGGCCGGGAGCAGGAGATCGAGCGGGTCATGCAGATCCTGTCCCGGCGTACCAAGAACAACCCGGTCC
TGATCGGCGAGCCCGGCGTCGGCAAGACGACCATCGTCGAGGGCCTGGCCCAGGACATCGTCAAGGGCAACGTGCCGGAG
ACGCTGAAGGACAAGCAGATCTACACCCTCGACCTGGGTGCGCTGGTCGCCGGGTCGCGCTACCGCGGCGACTTCGAGGA
GCGCCTGAAGAAGGTGCTCAAGGAGATCCGCACCCGCGGCGACATCGTGCTGTTCATCGACGAGATCCACACCCTCGTCG
GCGCCGGTGCGGCCGAGGGCGCGATCGACGCGGCGAGCATCCTCAAGCCGATGCTGGCCCGCGGCGAGCTGCAGACCATC
GGCGCGACCACCCTGGACGAGTACCGCAAGTACCTCGAGAAGGACGCCGCGCTCGAGCGCCGCTTCCAGCCGATCCAGGT
GGCCGAGCCGTCGATCGCGCACACCATCGAGATGCTCAAGGGGCTGCGCGACCGCTACGAGGCCCACCACCGCGTGACGA
TCACCGACGAGGCGCTCGTCTCGGCCGCGACGCTCGCGGACCGCTACATCTCCGACCGGTTCCTGCCCGACAAGGCGATC
GACCTGATCGACGAGGCCGGCTCGCGGCTGCGGATCCGCCGGATGACGGCGCCCGCCGACCTGCGCGAGTACGACGACAA
GATCGGCGAGGTGCGCCAGCGCAAGGAGGCCGCGATCGACGGCCAGGACTTCGAGGCCGCCGCGCGGCTGCGCGACGAGG
AGAAGCAGCTGATCCTCAAGAAGTCCGAGCGCGAGAAGCAGTGGCGTGCGGGTGACATGGACGAGGTCGCGGAGGTCGAC
GAGGAGCTGATCGCCGAGGTGCTCGCGGTGGCGACCGGCATCCCGATCGTGAAGCTGTCCGAGGAGGAGTCGACCCGGCT
GCTCAAGATGGAGGACGAGCTGCACAAGCGGGTGATCGGCCAGGAGGAGGCCGTCAAGGCGCTCAGCCGCGCCATCCGGC
GTACCCGCGCCGGCCTGAAGGACCCGAAGCGCCCCGGCGGGTCGTTCATCTTCGCCGGCCCCTCCGGTGTCGGCAAGACC
TGGCTGTCCAAGACGCTCGCGGAGTTCCTCTTCGGCGACGAGGACGCCTTGATCCAGCTCGACATGTCGGAGTTCGGCGA
GAAGCACACCGTCTCCCGGCTGTTCGGCTCGCCTCCCGGCTACGTCGGCTACGAGGAGGGCGGCCAGCTCACCGAGAAGG
TGCGCCGCAAGCCGTTCTCGGTCGTGCTCTTCGACGAGGTCGAGAAGGCGCACCCGGACATCTTCAACAGCCTGCTGCAG
ATCCTCGAGGAAGGTCGCCTGACCGACTCGCAGGGCCGGGTGGTCGACTTCAAGAACACCGTCATCATCATGACCACCAA
CCTCGGCACGCGCGACATCGCCAAGGGCATCAACCTCGGCTTCCAGCAGAGCGGCGACGCGGCCGGCTCCTACGAGCGGA
TGAAGAGCAAGGTGTCGGAGGAGCTCAAGCAGCACTTCCGGCCGGAGTTCCTCAACCGGGTCGACGAGGTCATCGTGTTC
CCGCCGCTGTCGCAGGAGCAGATCGTCCACATGGTCGACAACATGATCGCGTCGGTCGAGCTGCGGATGAAGGACCGCGA
CATGCGGATCGAGCTGACCCAGAACGCGAAGAACCTGCTCGCCGAGCGGGGCTTCGACCCGGTGCTGGGTGCTCGCCCGC
TGCGCCGGACGATCCAGCGCGAGATCGAGGACGTGCTCGCCGAGAAGATGCTGTACGGCGAGGTCGGCCCCGGCCAGATC
GTGCTCGTCGACGTGGAGGGCGAGGGCCCGACCGCGACGTTCACGTTCTCCGGCCAGAAGGTCGGCGACCTGCCCGACCT
GCCGCCGTTCGAGACCGCGGAGGTGACCTCCAGCGAGGCGACCCCCCCGACCGAGGGCCCGGACGACTCCGACAGCGGCA
CCGACGTACCCAAGTCCACCGACTGA

Upstream 100 bases:

>100_bases
TGGGAACGCGTAGGCTGTCTGCGGGGTTAGTTGTCTCGTACCTCCCCTCCACCACGACGGGGGGAGGCAGGCCCCCACAA
GCTTGTAGGAGCGATGCGCA

Downstream 100 bases:

>100_bases
CCCCTGCACCAACGCCGAGTCGGCGCATCCTGCCCGGGCAGGATGCGCCGACTTCGGCGTCTCAGGGCAGCGCGTAGGCG
TCCGGGCCGACGTGGACGAC

Product: ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 861; Mature: 861

Protein sequence:

>861_residues
MFERFTDRARRVVVLAQEEARMLSHNYIGTEHILLGLIHEGEGVAAKALESLDISLEAVRAQVEEIIGQGQQAPSGHIPF
TPRAKKVLELSLREALQLGHSYIGTEHILLGLIREGEGVAAQVLQKLGADLNRVRQQVIQLLSGFQGKESAGSAAATGAS
GGDAPSSSLVLDQFGRNLTQDAREGKLDPVIGREQEIERVMQILSRRTKNNPVLIGEPGVGKTTIVEGLAQDIVKGNVPE
TLKDKQIYTLDLGALVAGSRYRGDFEERLKKVLKEIRTRGDIVLFIDEIHTLVGAGAAEGAIDAASILKPMLARGELQTI
GATTLDEYRKYLEKDAALERRFQPIQVAEPSIAHTIEMLKGLRDRYEAHHRVTITDEALVSAATLADRYISDRFLPDKAI
DLIDEAGSRLRIRRMTAPADLREYDDKIGEVRQRKEAAIDGQDFEAAARLRDEEKQLILKKSEREKQWRAGDMDEVAEVD
EELIAEVLAVATGIPIVKLSEEESTRLLKMEDELHKRVIGQEEAVKALSRAIRRTRAGLKDPKRPGGSFIFAGPSGVGKT
WLSKTLAEFLFGDEDALIQLDMSEFGEKHTVSRLFGSPPGYVGYEEGGQLTEKVRRKPFSVVLFDEVEKAHPDIFNSLLQ
ILEEGRLTDSQGRVVDFKNTVIIMTTNLGTRDIAKGINLGFQQSGDAAGSYERMKSKVSEELKQHFRPEFLNRVDEVIVF
PPLSQEQIVHMVDNMIASVELRMKDRDMRIELTQNAKNLLAERGFDPVLGARPLRRTIQREIEDVLAEKMLYGEVGPGQI
VLVDVEGEGPTATFTFSGQKVGDLPDLPPFETAEVTSSEATPPTEGPDDSDSGTDVPKSTD

Sequences:

>Translated_861_residues
MFERFTDRARRVVVLAQEEARMLSHNYIGTEHILLGLIHEGEGVAAKALESLDISLEAVRAQVEEIIGQGQQAPSGHIPF
TPRAKKVLELSLREALQLGHSYIGTEHILLGLIREGEGVAAQVLQKLGADLNRVRQQVIQLLSGFQGKESAGSAAATGAS
GGDAPSSSLVLDQFGRNLTQDAREGKLDPVIGREQEIERVMQILSRRTKNNPVLIGEPGVGKTTIVEGLAQDIVKGNVPE
TLKDKQIYTLDLGALVAGSRYRGDFEERLKKVLKEIRTRGDIVLFIDEIHTLVGAGAAEGAIDAASILKPMLARGELQTI
GATTLDEYRKYLEKDAALERRFQPIQVAEPSIAHTIEMLKGLRDRYEAHHRVTITDEALVSAATLADRYISDRFLPDKAI
DLIDEAGSRLRIRRMTAPADLREYDDKIGEVRQRKEAAIDGQDFEAAARLRDEEKQLILKKSEREKQWRAGDMDEVAEVD
EELIAEVLAVATGIPIVKLSEEESTRLLKMEDELHKRVIGQEEAVKALSRAIRRTRAGLKDPKRPGGSFIFAGPSGVGKT
WLSKTLAEFLFGDEDALIQLDMSEFGEKHTVSRLFGSPPGYVGYEEGGQLTEKVRRKPFSVVLFDEVEKAHPDIFNSLLQ
ILEEGRLTDSQGRVVDFKNTVIIMTTNLGTRDIAKGINLGFQQSGDAAGSYERMKSKVSEELKQHFRPEFLNRVDEVIVF
PPLSQEQIVHMVDNMIASVELRMKDRDMRIELTQNAKNLLAERGFDPVLGARPLRRTIQREIEDVLAEKMLYGEVGPGQI
VLVDVEGEGPTATFTFSGQKVGDLPDLPPFETAEVTSSEATPPTEGPDDSDSGTDVPKSTD
>Mature_861_residues
MFERFTDRARRVVVLAQEEARMLSHNYIGTEHILLGLIHEGEGVAAKALESLDISLEAVRAQVEEIIGQGQQAPSGHIPF
TPRAKKVLELSLREALQLGHSYIGTEHILLGLIREGEGVAAQVLQKLGADLNRVRQQVIQLLSGFQGKESAGSAAATGAS
GGDAPSSSLVLDQFGRNLTQDAREGKLDPVIGREQEIERVMQILSRRTKNNPVLIGEPGVGKTTIVEGLAQDIVKGNVPE
TLKDKQIYTLDLGALVAGSRYRGDFEERLKKVLKEIRTRGDIVLFIDEIHTLVGAGAAEGAIDAASILKPMLARGELQTI
GATTLDEYRKYLEKDAALERRFQPIQVAEPSIAHTIEMLKGLRDRYEAHHRVTITDEALVSAATLADRYISDRFLPDKAI
DLIDEAGSRLRIRRMTAPADLREYDDKIGEVRQRKEAAIDGQDFEAAARLRDEEKQLILKKSEREKQWRAGDMDEVAEVD
EELIAEVLAVATGIPIVKLSEEESTRLLKMEDELHKRVIGQEEAVKALSRAIRRTRAGLKDPKRPGGSFIFAGPSGVGKT
WLSKTLAEFLFGDEDALIQLDMSEFGEKHTVSRLFGSPPGYVGYEEGGQLTEKVRRKPFSVVLFDEVEKAHPDIFNSLLQ
ILEEGRLTDSQGRVVDFKNTVIIMTTNLGTRDIAKGINLGFQQSGDAAGSYERMKSKVSEELKQHFRPEFLNRVDEVIVF
PPLSQEQIVHMVDNMIASVELRMKDRDMRIELTQNAKNLLAERGFDPVLGARPLRRTIQREIEDVLAEKMLYGEVGPGQI
VLVDVEGEGPTATFTFSGQKVGDLPDLPPFETAEVTSSEATPPTEGPDDSDSGTDVPKSTD

Specific function: Part Of A Stress-Induced Multi-Chaperone System, It Is Involved In The Recovery Of The Cell From Heat-Induced Damage, In Cooperation With Dnak, Dnaj And Grpe. Acts Before Dnak, In The Processing Of Protein Aggregates. Protein Binding Stimulates The Atpase

COG id: COG0542

COG function: function code O; ATPases with chaperone activity, ATP-binding subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 UVR domain [H]

Homologues:

Organism=Homo sapiens, GI13540606, Length=299, Percent_Identity=37.7926421404682, Blast_Score=203, Evalue=5e-52,
Organism=Escherichia coli, GI1788943, Length=872, Percent_Identity=45.0688073394495, Blast_Score=709, Evalue=0.0,
Organism=Escherichia coli, GI1787109, Length=828, Percent_Identity=38.768115942029, Blast_Score=546, Evalue=1e-156,
Organism=Saccharomyces cerevisiae, GI6320464, Length=699, Percent_Identity=48.3547925608011, Blast_Score=624, Evalue=1e-179,
Organism=Saccharomyces cerevisiae, GI6323002, Length=881, Percent_Identity=39.2735527809308, Blast_Score=569, Evalue=1e-163,

Paralogues:

None

Copy number: 560 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR013093
- InterPro:   IPR003959
- InterPro:   IPR018368
- InterPro:   IPR001270
- InterPro:   IPR019489
- InterPro:   IPR004176
- InterPro:   IPR023150
- InterPro:   IPR001943 [H]

Pfam domain/function: PF00004 AAA; PF07724 AAA_2; PF02861 Clp_N; PF10431 ClpB_D2-small; PF02151 UVR [H]

EC number: NA

Molecular weight: Translated: 95114; Mature: 95114

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: PS50151 UVR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFERFTDRARRVVVLAQEEARMLSHNYIGTEHILLGLIHEGEGVAAKALESLDISLEAVR
CCCHHHHHCCEEEEEEHHHHHHHHHCCCCHHHHHEEEEECCCCHHHHHHHHHHHHHHHHH
AQVEEIIGQGQQAPSGHIPFTPRAKKVLELSLREALQLGHSYIGTEHILLGLIREGEGVA
HHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCHH
AQVLQKLGADLNRVRQQVIQLLSGFQGKESAGSAAATGASGGDAPSSSLVLDQFGRNLTQ
HHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHH
DAREGKLDPVIGREQEIERVMQILSRRTKNNPVLIGEPGVGKTTIVEGLAQDIVKGNVPE
HHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCC
TLKDKQIYTLDLGALVAGSRYRGDFEERLKKVLKEIRTRGDIVLFIDEIHTLVGAGAAEG
CCCCCEEEEEEHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEEHHHHHHHHCCCCCCC
AIDAASILKPMLARGELQTIGATTLDEYRKYLEKDAALERRFQPIQVAEPSIAHTIEMLK
CHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
GLRDRYEAHHRVTITDEALVSAATLADRYISDRFLPDKAIDLIDEAGSRLRIRRMTAPAD
HHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEECCCCHH
LREYDDKIGEVRQRKEAAIDGQDFEAAARLRDEEKQLILKKSEREKQWRAGDMDEVAEVD
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
EELIAEVLAVATGIPIVKLSEEESTRLLKMEDELHKRVIGQEEAVKALSRAIRRTRAGLK
HHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCC
DPKRPGGSFIFAGPSGVGKTWLSKTLAEFLFGDEDALIQLDMSEFGEKHTVSRLFGSPPG
CCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECHHHCCCHHHHHHHHCCCCC
YVGYEEGGQLTEKVRRKPFSVVLFDEVEKAHPDIFNSLLQILEEGRLTDSQGRVVDFKNT
CCCCCCCCHHHHHHHCCCCEEEEEHHHHHCCHHHHHHHHHHHHHCCCCCCCCCEEEECCE
VIIMTTNLGTRDIAKGINLGFQQSGDAAGSYERMKSKVSEELKQHFRPEFLNRVDEVIVF
EEEEEECCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCEEEC
PPLSQEQIVHMVDNMIASVELRMKDRDMRIELTQNAKNLLAERGFDPVLGARPLRRTIQR
CCCCHHHHHHHHHHHHHHHHHEEECCCEEEEEHHHHHHHHHHCCCCCCCCCHHHHHHHHH
EIEDVLAEKMLYGEVGPGQIVLVDVEGEGPTATFTFSGQKVGDLPDLPPFETAEVTSSEA
HHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCC
TPPTEGPDDSDSGTDVPKSTD
CCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MFERFTDRARRVVVLAQEEARMLSHNYIGTEHILLGLIHEGEGVAAKALESLDISLEAVR
CCCHHHHHCCEEEEEEHHHHHHHHHCCCCHHHHHEEEEECCCCHHHHHHHHHHHHHHHHH
AQVEEIIGQGQQAPSGHIPFTPRAKKVLELSLREALQLGHSYIGTEHILLGLIREGEGVA
HHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCHH
AQVLQKLGADLNRVRQQVIQLLSGFQGKESAGSAAATGASGGDAPSSSLVLDQFGRNLTQ
HHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHH
DAREGKLDPVIGREQEIERVMQILSRRTKNNPVLIGEPGVGKTTIVEGLAQDIVKGNVPE
HHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCC
TLKDKQIYTLDLGALVAGSRYRGDFEERLKKVLKEIRTRGDIVLFIDEIHTLVGAGAAEG
CCCCCEEEEEEHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEEHHHHHHHHCCCCCCC
AIDAASILKPMLARGELQTIGATTLDEYRKYLEKDAALERRFQPIQVAEPSIAHTIEMLK
CHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
GLRDRYEAHHRVTITDEALVSAATLADRYISDRFLPDKAIDLIDEAGSRLRIRRMTAPAD
HHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEECCCCHH
LREYDDKIGEVRQRKEAAIDGQDFEAAARLRDEEKQLILKKSEREKQWRAGDMDEVAEVD
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
EELIAEVLAVATGIPIVKLSEEESTRLLKMEDELHKRVIGQEEAVKALSRAIRRTRAGLK
HHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCC
DPKRPGGSFIFAGPSGVGKTWLSKTLAEFLFGDEDALIQLDMSEFGEKHTVSRLFGSPPG
CCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECHHHCCCHHHHHHHHCCCCC
YVGYEEGGQLTEKVRRKPFSVVLFDEVEKAHPDIFNSLLQILEEGRLTDSQGRVVDFKNT
CCCCCCCCHHHHHHHCCCCEEEEEHHHHHCCHHHHHHHHHHHHHCCCCCCCCCEEEECCE
VIIMTTNLGTRDIAKGINLGFQQSGDAAGSYERMKSKVSEELKQHFRPEFLNRVDEVIVF
EEEEEECCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCEEEC
PPLSQEQIVHMVDNMIASVELRMKDRDMRIELTQNAKNLLAERGFDPVLGARPLRRTIQR
CCCCHHHHHHHHHHHHHHHHHEEECCCEEEEEHHHHHHHHHHCCCCCCCCCHHHHHHHHH
EIEDVLAEKMLYGEVGPGQIVLVDVEGEGPTATFTFSGQKVGDLPDLPPFETAEVTSSEA
HHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCC
TPPTEGPDDSDSGTDVPKSTD
CCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on peptide bonds (Peptidases); Serine endopeptidases [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]