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The map label for this gene is opuBD [H]

Identifier: 119714718

GI number: 119714718

Start: 483963

End: 484736

Strand: Direct

Name: opuBD [H]

Synonym: Noca_0454

Alternate gene names: 119714718

Gene position: 483963-484736 (Clockwise)

Preceding gene: 119714717

Following gene: 119714719

Centisome position: 9.71

GC content: 71.45

Gene sequence:

>774_bases
ATGACCTCGATGACGGTCCTCGCCGACGCGTGGGACTACCTGACGACGGCGGGGAGCTGGACCGGCGACGGCGGCATGGT
CGAGCTGCTGCTCCAGCAGCTGCTGCTGAGCTTCACCTCCTTGGCGCTGGCGGCCGCGGTCGGCCTGCCGGTCGCGCTCT
GGCTGGGTCATCTCGGGCGCGGCGGCTTCCTCGCGATCAACGTGACGAACATCGGACGCGCCGTACCCACCTTCGCGCTG
CTCGCCCTGCTCGTCACCGCTGATTGGCCCGGCACCGGCACCCTCGGACCGTACGGGCGGGCGGGACTCGCGACGATCAT
CGCGCTCACCCTGTTCGCCCTGCCCCCGATCATCACCAGCTCGTACGTCGGTGTCCGCGAGGTCTCGCCCGCGGTCAAGC
AGGCCGCCGACGGCATGGGGATGACCGGGCGCCAGAGGTTCTTCCGGGTCGAGCTCCCCCTGGCGGCCCCGCTGGTGCTG
CTCGGCCTGCGCCTGGCCCTCGTGCAGGTCTGGGCCACGGCCACCATCGCGGCGCTGGTCGCCGGCCCGGGGCTCGGTCG
CGTCATCACCGACGGGTTCTATCGCACCAACTACGGCAAGGGGGTGGCGGGAGCCGTGGTGGTCGCGGTCGTCGCGCTCC
TGCTCGAGCTGCTGGCCGCCCTCGGGCAGCGGGTGCTCGACCCGACGGCCCGAGCCTCGTCACCGAAACGTCACCAGGGA
ATGTCGGTGGACGCACCTAGAGTTACCGAAGCAGCCGACGCCGTCGGTCGTTAG

Upstream 100 bases:

>100_bases
TGACAGCGTCGTTGCTGTGCGTGCTGCTGGCGGTGGTGCTGGACGCGCTGATCGTCGGCGCCCAGTGGCTCCTCACCCCG
TGGTCCCGGGGGGCGCGCGG

Downstream 100 bases:

>100_bases
CAGCATCCGGACACGCGCGGCACCCTGCCGCGGGACACAGAAGGACATGCACATGCAGGTACGACGCTCGTTGGCCGCGG
CGCTCGCCGTCGGCTCCCTC

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 256

Protein sequence:

>257_residues
MTSMTVLADAWDYLTTAGSWTGDGGMVELLLQQLLLSFTSLALAAAVGLPVALWLGHLGRGGFLAINVTNIGRAVPTFAL
LALLVTADWPGTGTLGPYGRAGLATIIALTLFALPPIITSSYVGVREVSPAVKQAADGMGMTGRQRFFRVELPLAAPLVL
LGLRLALVQVWATATIAALVAGPGLGRVITDGFYRTNYGKGVAGAVVVAVVALLLELLAALGQRVLDPTARASSPKRHQG
MSVDAPRVTEAADAVGR

Sequences:

>Translated_257_residues
MTSMTVLADAWDYLTTAGSWTGDGGMVELLLQQLLLSFTSLALAAAVGLPVALWLGHLGRGGFLAINVTNIGRAVPTFAL
LALLVTADWPGTGTLGPYGRAGLATIIALTLFALPPIITSSYVGVREVSPAVKQAADGMGMTGRQRFFRVELPLAAPLVL
LGLRLALVQVWATATIAALVAGPGLGRVITDGFYRTNYGKGVAGAVVVAVVALLLELLAALGQRVLDPTARASSPKRHQG
MSVDAPRVTEAADAVGR
>Mature_256_residues
TSMTVLADAWDYLTTAGSWTGDGGMVELLLQQLLLSFTSLALAAAVGLPVALWLGHLGRGGFLAINVTNIGRAVPTFALL
ALLVTADWPGTGTLGPYGRAGLATIIALTLFALPPIITSSYVGVREVSPAVKQAADGMGMTGRQRFFRVELPLAAPLVLL
GLRLALVQVWATATIAALVAGPGLGRVITDGFYRTNYGKGVAGAVVVAVVALLLELLAALGQRVLDPTARASSPKRHQGM
SVDAPRVTEAADAVGR

Specific function: Involved in a high affinity multicomponent binding- protein-dependent transport system for choline; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1174

COG function: function code E; ABC-type proline/glycine betaine transport systems, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788451, Length=196, Percent_Identity=34.1836734693878, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1789033, Length=176, Percent_Identity=26.7045454545455, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1788449, Length=124, Percent_Identity=37.0967741935484, Blast_Score=67, Evalue=8e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 26538; Mature: 26406

Theoretical pI: Translated: 10.09; Mature: 10.09

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSMTVLADAWDYLTTAGSWTGDGGMVELLLQQLLLSFTSLALAAAVGLPVALWLGHLGR
CCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GGFLAINVTNIGRAVPTFALLALLVTADWPGTGTLGPYGRAGLATIIALTLFALPPIITS
CCEEEEEECHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
SYVGVREVSPAVKQAADGMGMTGRQRFFRVELPLAAPLVLLGLRLALVQVWATATIAALV
CCCCHHHHCHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGPGLGRVITDGFYRTNYGKGVAGAVVVAVVALLLELLAALGQRVLDPTARASSPKRHQG
HCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCHHHCC
MSVDAPRVTEAADAVGR
CCCCCCHHHHHHHHHCC
>Mature Secondary Structure 
TSMTVLADAWDYLTTAGSWTGDGGMVELLLQQLLLSFTSLALAAAVGLPVALWLGHLGR
CCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GGFLAINVTNIGRAVPTFALLALLVTADWPGTGTLGPYGRAGLATIIALTLFALPPIITS
CCEEEEEECHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
SYVGVREVSPAVKQAADGMGMTGRQRFFRVELPLAAPLVLLGLRLALVQVWATATIAALV
CCCCHHHHCHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGPGLGRVITDGFYRTNYGKGVAGAVVVAVVALLLELLAALGQRVLDPTARASSPKRHQG
HCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCHHHCC
MSVDAPRVTEAADAVGR
CCCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7592481; 10216873; 9384377; 1400221 [H]