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The map label for this gene is opuBB [H]

Identifier: 119714717

GI number: 119714717

Start: 483259

End: 483966

Strand: Direct

Name: opuBB [H]

Synonym: Noca_0453

Alternate gene names: 119714717

Gene position: 483259-483966 (Clockwise)

Preceding gene: 119714715

Following gene: 119714718

Centisome position: 9.69

GC content: 70.62

Gene sequence:

>708_bases
GTGACCCTACTCGGGGCCGTGCCGGCGGCCGACGACCCGAGCTGCTACAGCCGACTGACCAACGAATGGTTCTGCGGGCA
GTACCTGGGCGACTACCGCCACGAGCTGGTCGACGCAACGACCCAGCACCTCGTGATCACGGTGGTGAGCGTGATCGCCG
GTGTGGTGATCGCGTTCCCGCTCGCCCTGCTGGCCCGGCGGCTGCCGGCACTCGAGACCAGCGTCCTGGGGGTGACCACG
GCGGTCTACACGATCCCGTCGCTGGCGCTGTTCCCGCTGCTGGTGCCATTCACCGGGCTCAGCGCCACGACGGTGGTCAT
CGGCCTCGCGCTGTACGCGCTGACGATCCTGGTCCGCAGCATGCTCGAGGGTCTCCGGTCGGTGCCCGAGGAGGTGCGGG
AGTCGGCGGTCGGGTTGGGGTACGGCGCCACCCGGCTGCTGGTGCTCGTCGAGCTGCCGCTCGCGCTGCCGGTGATCATG
GCCGGCCTGCGGGTGGCGACGGTGTCCACCGTGGCGCTCACGACGGTCGGCTCCCTGGTCGCCTACGGCGGCCTCGGCAA
CCTGATCAAGGACGGCGTCACCACCAACTTCCGTGCCGAGCTGATGACAGCGTCGTTGCTGTGCGTGCTGCTGGCGGTGG
TGCTGGACGCGCTGATCGTCGGCGCCCAGTGGCTCCTCACCCCGTGGTCCCGGGGGGCGCGCGGATGA

Upstream 100 bases:

>100_bases
CGACCGTGCCGTCGTCGTAGGTCTTGCCGACGCCCGACAGCCGGATCATGGGCTCCGTGCTCGTGGGCCCGGCCGCCGCA
GACCCGGTAGCGTCCATGCG

Downstream 100 bases:

>100_bases
CCTCGATGACGGTCCTCGCCGACGCGTGGGACTACCTGACGACGGCGGGGAGCTGGACCGGCGACGGCGGCATGGTCGAG
CTGCTGCTCCAGCAGCTGCT

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 235; Mature: 234

Protein sequence:

>235_residues
MTLLGAVPAADDPSCYSRLTNEWFCGQYLGDYRHELVDATTQHLVITVVSVIAGVVIAFPLALLARRLPALETSVLGVTT
AVYTIPSLALFPLLVPFTGLSATTVVIGLALYALTILVRSMLEGLRSVPEEVRESAVGLGYGATRLLVLVELPLALPVIM
AGLRVATVSTVALTTVGSLVAYGGLGNLIKDGVTTNFRAELMTASLLCVLLAVVLDALIVGAQWLLTPWSRGARG

Sequences:

>Translated_235_residues
MTLLGAVPAADDPSCYSRLTNEWFCGQYLGDYRHELVDATTQHLVITVVSVIAGVVIAFPLALLARRLPALETSVLGVTT
AVYTIPSLALFPLLVPFTGLSATTVVIGLALYALTILVRSMLEGLRSVPEEVRESAVGLGYGATRLLVLVELPLALPVIM
AGLRVATVSTVALTTVGSLVAYGGLGNLIKDGVTTNFRAELMTASLLCVLLAVVLDALIVGAQWLLTPWSRGARG
>Mature_234_residues
TLLGAVPAADDPSCYSRLTNEWFCGQYLGDYRHELVDATTQHLVITVVSVIAGVVIAFPLALLARRLPALETSVLGVTTA
VYTIPSLALFPLLVPFTGLSATTVVIGLALYALTILVRSMLEGLRSVPEEVRESAVGLGYGATRLLVLVELPLALPVIMA
GLRVATVSTVALTTVGSLVAYGGLGNLIKDGVTTNFRAELMTASLLCVLLAVVLDALIVGAQWLLTPWSRGARG

Specific function: Involved in a high affinity multicomponent binding- protein-dependent transport system for choline; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1174

COG function: function code E; ABC-type proline/glycine betaine transport systems, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788451, Length=220, Percent_Identity=30.9090909090909, Blast_Score=95, Evalue=4e-21,
Organism=Escherichia coli, GI1789033, Length=164, Percent_Identity=26.8292682926829, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1788449, Length=135, Percent_Identity=32.5925925925926, Blast_Score=64, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 24701; Mature: 24569

Theoretical pI: Translated: 5.73; Mature: 5.73

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLLGAVPAADDPSCYSRLTNEWFCGQYLGDYRHELVDATTQHLVITVVSVIAGVVIAFP
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LALLARRLPALETSVLGVTTAVYTIPSLALFPLLVPFTGLSATTVVIGLALYALTILVRS
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
MLEGLRSVPEEVRESAVGLGYGATRLLVLVELPLALPVIMAGLRVATVSTVALTTVGSLV
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AYGGLGNLIKDGVTTNFRAELMTASLLCVLLAVVLDALIVGAQWLLTPWSRGARG
HHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
TLLGAVPAADDPSCYSRLTNEWFCGQYLGDYRHELVDATTQHLVITVVSVIAGVVIAFP
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LALLARRLPALETSVLGVTTAVYTIPSLALFPLLVPFTGLSATTVVIGLALYALTILVRS
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
MLEGLRSVPEEVRESAVGLGYGATRLLVLVELPLALPVIMAGLRVATVSTVALTTVGSLV
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AYGGLGNLIKDGVTTNFRAELMTASLLCVLLAVVLDALIVGAQWLLTPWSRGARG
HHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7592481; 10216873; 9384377 [H]