Click here to switch to the map view.

The map label for this gene is araA

Identifier: 119714647

GI number: 119714647

Start: 411277

End: 412785

Strand: Direct

Name: araA

Synonym: Noca_0382

Alternate gene names: 119714647

Gene position: 411277-412785 (Clockwise)

Preceding gene: 119714646

Following gene: 119714648

Centisome position: 8.25

GC content: 72.3

Gene sequence:

>1509_bases
GTGACCCACCACCCCGACGAGCTCGAGATCTGGTTCCTCACCGGGAGCCAGCACCTGTACGGGCCCGAGGTCATCGACCA
GGTCGCCGAGCACGCCGCCCGGATCGTGGCCGCGCTCGACGCGTCGCCGCACCTGCCGGTGCGCGTCGTGTCCAAGCCGG
TGCTCACCGAGACCGACTCGATCCGCCGCGCGCTCCTGGACGCCACCGCCACGGACTCCTGCGTCGGCGTGATCGCGTGG
ATGCACACCTTCAGCCCCGCGAAGATGTGGATCACCGGTCTCGACGCCCTCCGCAAGCCGCTGCTGCACCTGCACACGCA
GGCGAACCAGGCACTGCCGTGGGCCGAGATCGACATGGACTTCATGAACCTCAACCAGGCCGCCCACGGCGACCGGGAGT
TCGCGTCCGTGCAGACCCGGATGGGCGTGGCCCGCAAGACCGTCACCGGGCACGTCGAGGACCCCGAGGTCGCGCGCCGG
ATCGGCCTGTGGGCGCGGGCCGCCCTGGGCCGCCATGCGCTGGCCGGGATGCGGCTGGCCCGCTTCGGCGACAACATGCG
CAACGTCGCGGTGACCGAGGGCGACAAGGTCGAGGCCGAGCGCCGCTTCGGCGTCTCGGTCAACACCTGGGGCGTCAACG
ACCTGGTCGCCGTCGTCGACGAGGTCGCCGACGCCGACGTCGACAAGCTCTGCGAGGAGTACGCCGACAGCTACGACGTC
GCCGCCGAGCTGCTGCCCTCCGGGGAGCGCCACGAGTCCCTGCGGTACGGCGCCCGGATCGAGCTCGGCCTCCGGTCGTT
CCTCACCGAGGGCGGGTTCACGGCGTTCACCAGCAACTTCGAGGACCTCGGGGGGCTCCGGCAGCTCCCGGGCCTGGCCG
TGCAGCGGCTGATGGCCGACGGCTACGGCTTCGGCGGCGAGGGCGACTGGAAGACCTCGGTCCTCCTGCGCACCCTCAAG
GTCGTCGCCGACGGCCTGCCCGGCGGGACGTCCTTCATGGAGGACTACACGTACCACCTGGTCCCGGGCGAGGAGCGGAT
CCTCGGCGCGCACATGCTCGAGGTCTGCCCGAGCATCGCCGAGGGACGCCCGAGCCTGGAGATCCACCCGCTCTCCATCG
GCGGGCGCGAGGACCCGGTGCGGCTCGTCTTCGACGCCGCGCCCGGCCCGGCGGTGCTCCTCGGCCTCGCCGACCTCGGC
GAGCGGTTCCGTTTCGTGGGCAACGAGGTGGAGGTCGTCGCGCCGACCGAGCCGCTGCCCAACCTGCCGGTCGCCCGCGC
TGTCTGGCGACCGGCCCCCGACCTCCGCACCTCGACCGAGGCCTGGCTGATGGCCGGCGGACCGCACCACACGGTGCTGT
CCACCGCGCTCGGCGCCGAACACCTCGACGACCTCGCGGAGATGACCGGCACGGAGCTCGTGCTGGTCGACGCCGACACG
ACGATCCGCGGCCTGGCCAAGGAGCTGCGGTGGAGTGCGGCGTACCACCGACTGGCGCAGGGACTGTGA

Upstream 100 bases:

>100_bases
CGCTCCCGATCGCCCAGGAGCACGTCGACGCCCTCTACGACCGCTACCAGAACGTGTACGGCCAGACCCAGCAGACCCAG
CAACAGACCGGAGGAGTCGC

Downstream 100 bases:

>100_bases
TGCGTCCCGCGGCCGGAGCAGGGTGTGGGACGGACCTGCGCCCCCAGGTAGTGATATGGAGAAGGTGCATGCGCAAGCTA
CTCACCACGATCGTCGCAGG

Product: L-arabinose isomerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 502; Mature: 501

Protein sequence:

>502_residues
MTHHPDELEIWFLTGSQHLYGPEVIDQVAEHAARIVAALDASPHLPVRVVSKPVLTETDSIRRALLDATATDSCVGVIAW
MHTFSPAKMWITGLDALRKPLLHLHTQANQALPWAEIDMDFMNLNQAAHGDREFASVQTRMGVARKTVTGHVEDPEVARR
IGLWARAALGRHALAGMRLARFGDNMRNVAVTEGDKVEAERRFGVSVNTWGVNDLVAVVDEVADADVDKLCEEYADSYDV
AAELLPSGERHESLRYGARIELGLRSFLTEGGFTAFTSNFEDLGGLRQLPGLAVQRLMADGYGFGGEGDWKTSVLLRTLK
VVADGLPGGTSFMEDYTYHLVPGEERILGAHMLEVCPSIAEGRPSLEIHPLSIGGREDPVRLVFDAAPGPAVLLGLADLG
ERFRFVGNEVEVVAPTEPLPNLPVARAVWRPAPDLRTSTEAWLMAGGPHHTVLSTALGAEHLDDLAEMTGTELVLVDADT
TIRGLAKELRWSAAYHRLAQGL

Sequences:

>Translated_502_residues
MTHHPDELEIWFLTGSQHLYGPEVIDQVAEHAARIVAALDASPHLPVRVVSKPVLTETDSIRRALLDATATDSCVGVIAW
MHTFSPAKMWITGLDALRKPLLHLHTQANQALPWAEIDMDFMNLNQAAHGDREFASVQTRMGVARKTVTGHVEDPEVARR
IGLWARAALGRHALAGMRLARFGDNMRNVAVTEGDKVEAERRFGVSVNTWGVNDLVAVVDEVADADVDKLCEEYADSYDV
AAELLPSGERHESLRYGARIELGLRSFLTEGGFTAFTSNFEDLGGLRQLPGLAVQRLMADGYGFGGEGDWKTSVLLRTLK
VVADGLPGGTSFMEDYTYHLVPGEERILGAHMLEVCPSIAEGRPSLEIHPLSIGGREDPVRLVFDAAPGPAVLLGLADLG
ERFRFVGNEVEVVAPTEPLPNLPVARAVWRPAPDLRTSTEAWLMAGGPHHTVLSTALGAEHLDDLAEMTGTELVLVDADT
TIRGLAKELRWSAAYHRLAQGL
>Mature_501_residues
THHPDELEIWFLTGSQHLYGPEVIDQVAEHAARIVAALDASPHLPVRVVSKPVLTETDSIRRALLDATATDSCVGVIAWM
HTFSPAKMWITGLDALRKPLLHLHTQANQALPWAEIDMDFMNLNQAAHGDREFASVQTRMGVARKTVTGHVEDPEVARRI
GLWARAALGRHALAGMRLARFGDNMRNVAVTEGDKVEAERRFGVSVNTWGVNDLVAVVDEVADADVDKLCEEYADSYDVA
AELLPSGERHESLRYGARIELGLRSFLTEGGFTAFTSNFEDLGGLRQLPGLAVQRLMADGYGFGGEGDWKTSVLLRTLKV
VADGLPGGTSFMEDYTYHLVPGEERILGAHMLEVCPSIAEGRPSLEIHPLSIGGREDPVRLVFDAAPGPAVLLGLADLGE
RFRFVGNEVEVVAPTEPLPNLPVARAVWRPAPDLRTSTEAWLMAGGPHHTVLSTALGAEHLDDLAEMTGTELVLVDADTT
IRGLAKELRWSAAYHRLAQGL

Specific function: Catalyzes the conversion of L-arabinose to L-ribulose

COG id: COG2160

COG function: function code G; L-arabinose isomerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the arabinose isomerase family

Homologues:

Organism=Escherichia coli, GI1786248, Length=492, Percent_Identity=52.4390243902439, Blast_Score=552, Evalue=1e-158,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): ARAA_NOCSJ (A1SDP0)

Other databases:

- EMBL:   CP000509
- RefSeq:   YP_921612.1
- ProteinModelPortal:   A1SDP0
- SMR:   A1SDP0
- STRING:   A1SDP0
- GeneID:   4597768
- GenomeReviews:   CP000509_GR
- KEGG:   nca:Noca_0382
- eggNOG:   COG2160
- HOGENOM:   HBG297198
- OMA:   EVCPTIA
- PhylomeDB:   A1SDP0
- ProtClustDB:   PRK02929
- BioCyc:   NSP35761:NOCA_0382-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00519
- InterPro:   IPR004216
- InterPro:   IPR009015
- InterPro:   IPR003762
- PIRSF:   PIRSF001478
- ProDom:   PD018364

Pfam domain/function: PF02610 Arabinose_Isome; SSF50443 Fuc_isomerase_C; SSF53743 Fuc_isomerase_N

EC number: =5.3.1.4

Molecular weight: Translated: 54673; Mature: 54542

Theoretical pI: Translated: 4.95; Mature: 4.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTHHPDELEIWFLTGSQHLYGPEVIDQVAEHAARIVAALDASPHLPVRVVSKPVLTETDS
CCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCHHH
IRRALLDATATDSCVGVIAWMHTFSPAKMWITGLDALRKPLLHLHTQANQALPWAEIDMD
HHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCHH
FMNLNQAAHGDREFASVQTRMGVARKTVTGHVEDPEVARRIGLWARAALGRHALAGMRLA
HHHCCHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
RFGDNMRNVAVTEGDKVEAERRFGVSVNTWGVNDLVAVVDEVADADVDKLCEEYADSYDV
HHCCCCCEEEECCCCCCCHHHHCCCEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
AAELLPSGERHESLRYGARIELGLRSFLTEGGFTAFTSNFEDLGGLRQLPGLAVQRLMAD
HHHHCCCCCHHHHHHCCCEEEHHHHHHHHCCCCHHHHCCHHHHCHHHHCHHHHHHHHHHC
GYGFGGEGDWKTSVLLRTLKVVADGLPGGTSFMEDYTYHLVPGEERILGAHMLEVCPSIA
CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHCCEEEECCCHHHHHHHHHHHHCHHHH
EGRPSLEIHPLSIGGREDPVRLVFDAAPGPAVLLGLADLGERFRFVGNEVEVVAPTEPLP
CCCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEEHHHHHHHHHHCCCEEEEEECCCCCC
NLPVARAVWRPAPDLRTSTEAWLMAGGPHHTVLSTALGAEHLDDLAEMTGTELVLVDADT
CCCHHHHHCCCCCCCCCCCCCEEEECCCCHHHHHHHHCHHHHHHHHHHCCCEEEEEECCH
TIRGLAKELRWSAAYHRLAQGL
HHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
THHPDELEIWFLTGSQHLYGPEVIDQVAEHAARIVAALDASPHLPVRVVSKPVLTETDS
CCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCHHH
IRRALLDATATDSCVGVIAWMHTFSPAKMWITGLDALRKPLLHLHTQANQALPWAEIDMD
HHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCHH
FMNLNQAAHGDREFASVQTRMGVARKTVTGHVEDPEVARRIGLWARAALGRHALAGMRLA
HHHCCHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
RFGDNMRNVAVTEGDKVEAERRFGVSVNTWGVNDLVAVVDEVADADVDKLCEEYADSYDV
HHCCCCCEEEECCCCCCCHHHHCCCEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
AAELLPSGERHESLRYGARIELGLRSFLTEGGFTAFTSNFEDLGGLRQLPGLAVQRLMAD
HHHHCCCCCHHHHHHCCCEEEHHHHHHHHCCCCHHHHCCHHHHCHHHHCHHHHHHHHHHC
GYGFGGEGDWKTSVLLRTLKVVADGLPGGTSFMEDYTYHLVPGEERILGAHMLEVCPSIA
CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHCCEEEECCCHHHHHHHHHHHHCHHHH
EGRPSLEIHPLSIGGREDPVRLVFDAAPGPAVLLGLADLGERFRFVGNEVEVVAPTEPLP
CCCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEEHHHHHHHHHHCCCEEEEEECCCCCC
NLPVARAVWRPAPDLRTSTEAWLMAGGPHHTVLSTALGAEHLDDLAEMTGTELVLVDADT
CCCHHHHHCCCCCCCCCCCCCEEEECCCCHHHHHHHHCHHHHHHHHHHCCCEEEEEECCH
TIRGLAKELRWSAAYHRLAQGL
HHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA