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The map label for this gene is rbsC [H]

Identifier: 119714368

GI number: 119714368

Start: 114503

End: 115531

Strand: Direct

Name: rbsC [H]

Synonym: Noca_0101

Alternate gene names: 119714368

Gene position: 114503-115531 (Clockwise)

Preceding gene: 119714367

Following gene: 119714369

Centisome position: 2.3

GC content: 70.85

Gene sequence:

>1029_bases
ATGTCAGTGGGTACAACTACCGGTCACGACACGGACGCCGTCGCGCCGGCCCAGCCGGGCGCTCGTCGCTGGACCTCGCG
CATCGAGGCCGGCGCCCTGCCCGCGGCCTGGCTCGTCGTCTTCGTCGTCTTCGCCGTGCTGCTGCCGGACACGTTCCTGA
GCACGGCGAGCGTCTCGAACATCCTGGGATCGCAGGCGGTCCCGCTGGTGCTGACGCTGTGCCTGGTGCTGCCGCTGGTG
TGCGGCGACTACGACATGTCGGTCGCGTCCGTCGCCACCCTCACCGCCATGGTGATCGGCATCTTGAACGTCAACCACGG
ATGGTCGATCGGCGCCGCGATCCTGGCGGGCCTCCTGGCGGCCCTGCTGGCCGGGTTGGTGAACGGCGCCGTGATCGTGA
TCTTCGGGGTCGACTCGCTGATCGTCACGCTCGGCACGGGGACCGTGATCCAGGGCCTGGTCCTCTGGATCAGCGACTCC
ACGACGGTCAGCGGCATCTCGACCTCGCTGGTCGACCTGGTCATCGGCTACAAGCTGTTCAGCGTGCCGGCGGCGTTCTA
CTACGGCCTCGCGCTCTGCGTCGTGCTCTGGTACCTGCTGCAGCACACCGCGCTCGGGATGCGCATGCTGTTCATCGGGC
GGGGCCGCGACGTCGCGCGCCTGAGCGGCATCGCGGTCCCCCGGGTCCGCATGGGTGCCCTGGTGGCGTCGGCCGGACTG
GCGGGCGTGGCGGGCACCCTGTACGCCGGCACCACCGGCTCGGCGGACCCGAGCTCGGGCACCTCGTTCCTGCTGCCGGC
GTTCGCCGCGGTCTTCCTCGGCGCGACCACCGTGATCCCGGGCCGCTTCAACGCCTGGGGCGCGTTCATCGCCGTCTACT
TTCTCGCCACCGGCATCACCGGGCTCCAGCTCCTGGGGGCGGAGAGCTTCGTGCAGCAGCTCTTCTACGGCGGCGCGCTG
GTCATCGCCGTCTCCCTGGCGCAGCTGGCCCGCCGCCGCGAGGCGAGCAGCGCGGGCACCACCTCCTGA

Upstream 100 bases:

>100_bases
CGGCCTGACCGAGATGCTGTTCGCCGACGCGGTGGTCAGATCGCGCCGCGCCACCTCCGACGCCTGATCAGCCCCATCAC
CGCCCGTGAAGAGAGTCGAC

Downstream 100 bases:

>100_bases
TGGTGGTGCCGACGCTGCCGGTGGCGGACTGCCACAACGACCTGCTGCTGGGTGTCCTGCACCAGCGCGAGCGGGGCATC
GCCGACCCGTTCGGCGACTT

Product: inner-membrane translocator

Products: ADP; phosphate; ribose [Cytoplasm]; D-allose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 342; Mature: 341

Protein sequence:

>342_residues
MSVGTTTGHDTDAVAPAQPGARRWTSRIEAGALPAAWLVVFVVFAVLLPDTFLSTASVSNILGSQAVPLVLTLCLVLPLV
CGDYDMSVASVATLTAMVIGILNVNHGWSIGAAILAGLLAALLAGLVNGAVIVIFGVDSLIVTLGTGTVIQGLVLWISDS
TTVSGISTSLVDLVIGYKLFSVPAAFYYGLALCVVLWYLLQHTALGMRMLFIGRGRDVARLSGIAVPRVRMGALVASAGL
AGVAGTLYAGTTGSADPSSGTSFLLPAFAAVFLGATTVIPGRFNAWGAFIAVYFLATGITGLQLLGAESFVQQLFYGGAL
VIAVSLAQLARRREASSAGTTS

Sequences:

>Translated_342_residues
MSVGTTTGHDTDAVAPAQPGARRWTSRIEAGALPAAWLVVFVVFAVLLPDTFLSTASVSNILGSQAVPLVLTLCLVLPLV
CGDYDMSVASVATLTAMVIGILNVNHGWSIGAAILAGLLAALLAGLVNGAVIVIFGVDSLIVTLGTGTVIQGLVLWISDS
TTVSGISTSLVDLVIGYKLFSVPAAFYYGLALCVVLWYLLQHTALGMRMLFIGRGRDVARLSGIAVPRVRMGALVASAGL
AGVAGTLYAGTTGSADPSSGTSFLLPAFAAVFLGATTVIPGRFNAWGAFIAVYFLATGITGLQLLGAESFVQQLFYGGAL
VIAVSLAQLARRREASSAGTTS
>Mature_341_residues
SVGTTTGHDTDAVAPAQPGARRWTSRIEAGALPAAWLVVFVVFAVLLPDTFLSTASVSNILGSQAVPLVLTLCLVLPLVC
GDYDMSVASVATLTAMVIGILNVNHGWSIGAAILAGLLAALLAGLVNGAVIVIFGVDSLIVTLGTGTVIQGLVLWISDST
TVSGISTSLVDLVIGYKLFSVPAAFYYGLALCVVLWYLLQHTALGMRMLFIGRGRDVARLSGIAVPRVRMGALVASAGLA
GVAGTLYAGTTGSADPSSGTSFLLPAFAAVFLGATTVIPGRFNAWGAFIAVYFLATGITGLQLLGAESFVQQLFYGGALV
IAVSLAQLARRREASSAGTTS

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790524, Length=294, Percent_Identity=26.1904761904762, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1790191, Length=315, Percent_Identity=29.2063492063492, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI145693152, Length=307, Percent_Identity=30.6188925081433, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1788896, Length=321, Percent_Identity=27.1028037383178, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1787794, Length=272, Percent_Identity=30.8823529411765, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI1787793, Length=224, Percent_Identity=26.7857142857143, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1789992, Length=137, Percent_Identity=28.4671532846715, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34966; Mature: 34835

Theoretical pI: Translated: 8.05; Mature: 8.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVGTTTGHDTDAVAPAQPGARRWTSRIEAGALPAAWLVVFVVFAVLLPDTFLSTASVSN
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHH
ILGSQAVPLVLTLCLVLPLVCGDYDMSVASVATLTAMVIGILNVNHGWSIGAAILAGLLA
HHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
ALLAGLVNGAVIVIFGVDSLIVTLGTGTVIQGLVLWISDSTTVSGISTSLVDLVIGYKLF
HHHHHHHCCCEEEEEEHHHHHHHHCCCHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHH
SVPAAFYYGLALCVVLWYLLQHTALGMRMLFIGRGRDVARLSGIAVPRVRMGALVASAGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHCCCCCHHHHHHHHHHCCH
AGVAGTLYAGTTGSADPSSGTSFLLPAFAAVFLGATTVIPGRFNAWGAFIAVYFLATGIT
HHHHHHHEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCHH
GLQLLGAESFVQQLFYGGALVIAVSLAQLARRREASSAGTTS
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
SVGTTTGHDTDAVAPAQPGARRWTSRIEAGALPAAWLVVFVVFAVLLPDTFLSTASVSN
CCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHH
ILGSQAVPLVLTLCLVLPLVCGDYDMSVASVATLTAMVIGILNVNHGWSIGAAILAGLLA
HHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
ALLAGLVNGAVIVIFGVDSLIVTLGTGTVIQGLVLWISDSTTVSGISTSLVDLVIGYKLF
HHHHHHHCCCEEEEEEHHHHHHHHCCCHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHH
SVPAAFYYGLALCVVLWYLLQHTALGMRMLFIGRGRDVARLSGIAVPRVRMGALVASAGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHCCCCCHHHHHHHHHHCCH
AGVAGTLYAGTTGSADPSSGTSFLLPAFAAVFLGATTVIPGRFNAWGAFIAVYFLATGIT
HHHHHHHEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCHH
GLQLLGAESFVQQLFYGGALVIAVSLAQLARRREASSAGTTS
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: H2O; ribose [Periplasm]; D-allose [Periplasm]; ATP [C]

Specific reaction: ATP + H2O + ribose [Periplasm] = ADP + phosphate + ribose [Cytoplasm] D-allose [Periplasm] + ATP + H2O = D-allose [Cytoplasm] + ADP + phosphate [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]