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The map label for this gene is fadM [H]

Identifier: 119714356

GI number: 119714356

Start: 99617

End: 100543

Strand: Direct

Name: fadM [H]

Synonym: Noca_0088

Alternate gene names: 119714356

Gene position: 99617-100543 (Clockwise)

Preceding gene: 119714354

Following gene: 119714357

Centisome position: 2.0

GC content: 73.46

Gene sequence:

>927_bases
GTGCTCAGCCCCGCCCTGCTCCGTGCCTCCCGCAGCCCCCGTGCTCGCCGGCTCGTCGAGGGACTCCCCGCGACCCGTCG
GGTGGTCGACCGGTTCGTCGCCGGGGAGGAGAACGCCGACGCCGTACGGGCCACGCTGGAGCTCGCCCGTGCGAACCGCG
ACGTGTCCATCGACGTGCTGGGCGAGGACGTGCACGACGAGGGGGGCGCCCGGCGCACCCGGGACGCCTACCTGGCCCTG
GTCGGCGCCATGGCCGACGCCGGGGTCGCGCCCGGCGCCGACCTGTCCCTCAAGCTGTCGGCCCTGGGGCGGGCGCTGCC
GCGCGACGGCGACGCGATCGCCCTTGCGAACGCCCACCGGATCTGCGCCGCCGCGGACCAGCGCGGATTCACGGTCACCC
TCGACATGGAGGACCACACCACGGTCGATGCCACGCTGGCGGTGGGTGCCGAGCTGCGCTCCGACTTCGAGCTCGTGGGC
AACGTGCTCCAGTCGAACCTGCGGAGAACCGCCGGCGACATCGAGCAGCTGCGCGCGTCGCCGGCGCGGGTGCGCATCGT
CAAGGGGGCCTACCGGGAGCCCGCGTCGGTGGCCTTCCAGCGCAAGGCCGAGGTCGACGTCGCATACGCGCGGGACATCT
CCGCCCTCTTCGGCTCCGCTTGCTACCCGATGGTGGCCACCCATGACCCGGTGATGCTGGCGCACGCCGTCTTCGAGGCC
CGCCGTTCGGGGCGGGACGACGACGGCTGGGAGACGCAGATGCTCTACGGCATCCGCGCCGATCTGCAGGCCGAGATCGC
GAGCTCTGGGCGCCGGATGCGGGTGTACGTCCCCGTCGGCACCGACTGGTACGGCTACTTCATGCGCCGGCTCGCCGAAC
GGCCGGCGAACGTCGCGTTCTTCCTCCGTGCGGTCGCCGGCCGGTGA

Upstream 100 bases:

>100_bases
TCGTCGAGCGCGTCCATCAGACAATTGTCACAGAGATTCGCGCACTGCCTGGGAATCTGTCCATCGCGGTCGCCTCGTCG
GCGCTCGTAGGTTTCCTGTC

Downstream 100 bases:

>100_bases
CCGACCCCCACAACCTCGAAAGGCGATCGTGGACGCTGTCACGACCCCTCCCGCTCCGACCAACGAGCCGAACCTGACCT
ACGCGCCCGGCGCCCCCGAA

Product: L-proline dehydrogenase

Products: NA

Alternate protein names: PRODH 1; Proline oxidase 1 [H]

Number of amino acids: Translated: 308; Mature: 308

Protein sequence:

>308_residues
MLSPALLRASRSPRARRLVEGLPATRRVVDRFVAGEENADAVRATLELARANRDVSIDVLGEDVHDEGGARRTRDAYLAL
VGAMADAGVAPGADLSLKLSALGRALPRDGDAIALANAHRICAAADQRGFTVTLDMEDHTTVDATLAVGAELRSDFELVG
NVLQSNLRRTAGDIEQLRASPARVRIVKGAYREPASVAFQRKAEVDVAYARDISALFGSACYPMVATHDPVMLAHAVFEA
RRSGRDDDGWETQMLYGIRADLQAEIASSGRRMRVYVPVGTDWYGYFMRRLAERPANVAFFLRAVAGR

Sequences:

>Translated_308_residues
MLSPALLRASRSPRARRLVEGLPATRRVVDRFVAGEENADAVRATLELARANRDVSIDVLGEDVHDEGGARRTRDAYLAL
VGAMADAGVAPGADLSLKLSALGRALPRDGDAIALANAHRICAAADQRGFTVTLDMEDHTTVDATLAVGAELRSDFELVG
NVLQSNLRRTAGDIEQLRASPARVRIVKGAYREPASVAFQRKAEVDVAYARDISALFGSACYPMVATHDPVMLAHAVFEA
RRSGRDDDGWETQMLYGIRADLQAEIASSGRRMRVYVPVGTDWYGYFMRRLAERPANVAFFLRAVAGR
>Mature_308_residues
MLSPALLRASRSPRARRLVEGLPATRRVVDRFVAGEENADAVRATLELARANRDVSIDVLGEDVHDEGGARRTRDAYLAL
VGAMADAGVAPGADLSLKLSALGRALPRDGDAIALANAHRICAAADQRGFTVTLDMEDHTTVDATLAVGAELRSDFELVG
NVLQSNLRRTAGDIEQLRASPARVRIVKGAYREPASVAFQRKAEVDVAYARDISALFGSACYPMVATHDPVMLAHAVFEA
RRSGRDDDGWETQMLYGIRADLQAEIASSGRRMRVYVPVGTDWYGYFMRRLAERPANVAFFLRAVAGR

Specific function: Catalyzes the oxidation of L-proline to delta-1- pyrroline-5-carboxylate (P5C) [H]

COG id: COG0506

COG function: function code E; Proline dehydrogenase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the proline oxidase family [H]

Homologues:

Organism=Escherichia coli, GI1787250, Length=320, Percent_Identity=25.9375, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015590
- InterPro:   IPR002872
- InterPro:   IPR008219 [H]

Pfam domain/function: PF01619 Pro_dh [H]

EC number: =1.5.99.8 [H]

Molecular weight: Translated: 33464; Mature: 33464

Theoretical pI: Translated: 8.22; Mature: 8.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSPALLRASRSPRARRLVEGLPATRRVVDRFVAGEENADAVRATLELARANRDVSIDVL
CCCHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEEE
GEDVHDEGGARRTRDAYLALVGAMADAGVAPGADLSLKLSALGRALPRDGDAIALANAHR
CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHCCCCCCCCEEEEECCHH
ICAAADQRGFTVTLDMEDHTTVDATLAVGAELRSDFELVGNVLQSNLRRTAGDIEQLRAS
HHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PARVRIVKGAYREPASVAFQRKAEVDVAYARDISALFGSACYPMVATHDPVMLAHAVFEA
CCEEEEECCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHCCCCHHHHHHHHHHH
RRSGRDDDGWETQMLYGIRADLQAEIASSGRRMRVYVPVGTDWYGYFMRRLAERPANVAF
HHCCCCCCCCCHHEEEHHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHHHCCCHHHH
FLRAVAGR
HHHHHHCC
>Mature Secondary Structure
MLSPALLRASRSPRARRLVEGLPATRRVVDRFVAGEENADAVRATLELARANRDVSIDVL
CCCHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEEE
GEDVHDEGGARRTRDAYLALVGAMADAGVAPGADLSLKLSALGRALPRDGDAIALANAHR
CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHCCCCCCCCEEEEECCHH
ICAAADQRGFTVTLDMEDHTTVDATLAVGAELRSDFELVGNVLQSNLRRTAGDIEQLRAS
HHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PARVRIVKGAYREPASVAFQRKAEVDVAYARDISALFGSACYPMVATHDPVMLAHAVFEA
CCEEEEECCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHCCCCHHHHHHHHHHH
RRSGRDDDGWETQMLYGIRADLQAEIASSGRRMRVYVPVGTDWYGYFMRRLAERPANVAF
HHCCCCCCCCCHHEEEHHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHHHCCCHHHH
FLRAVAGR
HHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA