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The map label for this gene is yebA [H]

Identifier: 119387178

GI number: 119387178

Start: 1687807

End: 1689282

Strand: Direct

Name: yebA [H]

Synonym: Pden_4473

Alternate gene names: 119387178

Gene position: 1687807-1689282 (Clockwise)

Preceding gene: 119387177

Following gene: 119387179

Centisome position: 97.56

GC content: 66.26

Gene sequence:

>1476_bases
TTGCCGATCGCCCTTGCCACCGGCGGATATCCACCCGCCGCTCGGGCATGGATCGGCGTCAATCCGCCCAAGGGATGTGC
AGAGGCCCCACCGCTGTTGCGCTTTGAGCACAGGTCGGATTTATCCGTGCGCAGCCATGACCGCCTCTGCCCGGCAGGTC
GGCCGAAACAATATGGACCCGGGACATTGCGCATCACTCATAGCCTGAATTCGGTGCTTGAGCGCTGGCTGCCAGAGCAG
CGCCTCTTCCTGAAATCGGACAAAACGACCCGCTTCCTGCGGCTGCGTCCGGCCACGCAGCTTCTTGGCCTTGGCGGGAT
CGCACTGGTTTTCGGCTGGTCGATCATCGCCAGCTCGATCCTGGTCATCGACGCGATCAGCGCCGGCTCGGCCCGCGACG
AGGCGCGGCTGGCGCAAAGCGCCTTCGAAGCGCGGCTGACCGACCTGTCCGCCGAACGCGACCGCCGCGCCGCCGAGGCC
GCGGCCGCGCAGAACCGCTTTGCCGTCGCGCTGGACCAGGTGTCGCGCATGCAGTCGCTGCTGCTGGAATCCGAAGCGCA
GCGGCGCGAACTGGAAACCGGCCTGGGCGCGGTGCAGGCCAGCCTGCAGGATGTCGTGAGGGCCCAGCACCAGGCCGAGG
CCCTGGCCGCCGCCGATGGCGAGGCCGCCCCCGTCCGCACCGCCGAACTGCAAGCCGCACTGGACATCCTGTCGGGCGAA
CTGAAGCAGGCGGCCAGCCAGCGCATCGAGGCAGTGCAGCAGGCCGAGGACGCCAAGCGCCTTGCCGACGCCGTCACGCT
GGAGCGCGACCAGATCGTCGCGCGCAACGACGAAATCCTGGCGCAGCTCGAAGATGCCGTCTCGGTCTCGGTCAAGCCGC
TGGACGACATGTTCCGCGCCGTCGGCATGAACCCGGACGAGATCCTCAAGACCGTGCGCCGCGGCTATTCCGGCCAGGGC
GGGCCGCTGAACCCGGTCAGCTATTCCTCCAGCGGCAATGCCGAGATCAGCCAGGGCGAGGCCAAGGCCAACGAGATCCT
GATCACGCTGGACCAGGTGAACAGCTATCGCATCGCCATCGAGAAGATGCCACTGGCCATGCCGGTGAAGTCGGCTTTCC
GCTATACCTCGCCCTTCGGCCGGCGCTGGGGCCGCGCGCATGAGGGCATCGACATGGCCGCCCCGGTCGGCACGCCGGTC
TATGCCACGGGCGAGGGCACGGTAATCTTTGCCGGCTGGCAGCGCGGCTATGGCAACCTGATCAAGATCCAGCACGAGCT
GGGCACCGAAACCCGCTATGGCCACCTGTCCAAGATTCGCGTGAAGGCCGGCCAAAAGGTATCGCGCGGCAGCCAGATCG
GTGATATGGGCAATACCGGCAGATCGACCGGCTCGCATCTTCATTACGAAGTCCGCGTGAACGGCCGTGCCGTGAATCCC
ATGAGCTTCATCAAGGCAGCCCAAAATGTTTTCTAA

Upstream 100 bases:

>100_bases
TGTGGCCGGCCGAAAGCGATCCGGGCAATCGTGCTGACAAATTATACTTTCCATTTCAGCCATTTGTCTGGATTATTCCC
GAGATCAATCTTGGGTTGCA

Downstream 100 bases:

>100_bases
GACCCGTGTCACCGAACCTGGCCCCCGCACCCAGCCGACCCCCGAGCCCGAACCCGCGCGCAGCCTCGACACGAGTTACG
ACATTCCGGCAGCCGCGCCG

Product: peptidase M23B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 491; Mature: 490

Protein sequence:

>491_residues
MPIALATGGYPPAARAWIGVNPPKGCAEAPPLLRFEHRSDLSVRSHDRLCPAGRPKQYGPGTLRITHSLNSVLERWLPEQ
RLFLKSDKTTRFLRLRPATQLLGLGGIALVFGWSIIASSILVIDAISAGSARDEARLAQSAFEARLTDLSAERDRRAAEA
AAAQNRFAVALDQVSRMQSLLLESEAQRRELETGLGAVQASLQDVVRAQHQAEALAAADGEAAPVRTAELQAALDILSGE
LKQAASQRIEAVQQAEDAKRLADAVTLERDQIVARNDEILAQLEDAVSVSVKPLDDMFRAVGMNPDEILKTVRRGYSGQG
GPLNPVSYSSSGNAEISQGEAKANEILITLDQVNSYRIAIEKMPLAMPVKSAFRYTSPFGRRWGRAHEGIDMAAPVGTPV
YATGEGTVIFAGWQRGYGNLIKIQHELGTETRYGHLSKIRVKAGQKVSRGSQIGDMGNTGRSTGSHLHYEVRVNGRAVNP
MSFIKAAQNVF

Sequences:

>Translated_491_residues
MPIALATGGYPPAARAWIGVNPPKGCAEAPPLLRFEHRSDLSVRSHDRLCPAGRPKQYGPGTLRITHSLNSVLERWLPEQ
RLFLKSDKTTRFLRLRPATQLLGLGGIALVFGWSIIASSILVIDAISAGSARDEARLAQSAFEARLTDLSAERDRRAAEA
AAAQNRFAVALDQVSRMQSLLLESEAQRRELETGLGAVQASLQDVVRAQHQAEALAAADGEAAPVRTAELQAALDILSGE
LKQAASQRIEAVQQAEDAKRLADAVTLERDQIVARNDEILAQLEDAVSVSVKPLDDMFRAVGMNPDEILKTVRRGYSGQG
GPLNPVSYSSSGNAEISQGEAKANEILITLDQVNSYRIAIEKMPLAMPVKSAFRYTSPFGRRWGRAHEGIDMAAPVGTPV
YATGEGTVIFAGWQRGYGNLIKIQHELGTETRYGHLSKIRVKAGQKVSRGSQIGDMGNTGRSTGSHLHYEVRVNGRAVNP
MSFIKAAQNVF
>Mature_490_residues
PIALATGGYPPAARAWIGVNPPKGCAEAPPLLRFEHRSDLSVRSHDRLCPAGRPKQYGPGTLRITHSLNSVLERWLPEQR
LFLKSDKTTRFLRLRPATQLLGLGGIALVFGWSIIASSILVIDAISAGSARDEARLAQSAFEARLTDLSAERDRRAAEAA
AAQNRFAVALDQVSRMQSLLLESEAQRRELETGLGAVQASLQDVVRAQHQAEALAAADGEAAPVRTAELQAALDILSGEL
KQAASQRIEAVQQAEDAKRLADAVTLERDQIVARNDEILAQLEDAVSVSVKPLDDMFRAVGMNPDEILKTVRRGYSGQGG
PLNPVSYSSSGNAEISQGEAKANEILITLDQVNSYRIAIEKMPLAMPVKSAFRYTSPFGRRWGRAHEGIDMAAPVGTPVY
ATGEGTVIFAGWQRGYGNLIKIQHELGTETRYGHLSKIRVKAGQKVSRGSQIGDMGNTGRSTGSHLHYEVRVNGRAVNPM
SFIKAAQNVF

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=125, Percent_Identity=48, Blast_Score=108, Evalue=7e-25,
Organism=Escherichia coli, GI87082174, Length=100, Percent_Identity=41, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI1789099, Length=107, Percent_Identity=40.1869158878505, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI87082297, Length=103, Percent_Identity=33.9805825242718, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 53153; Mature: 53022

Theoretical pI: Translated: 9.58; Mature: 9.58

Prosite motif: PS00211 ABC_TRANSPORTER_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPIALATGGYPPAARAWIGVNPPKGCAEAPPLLRFEHRSDLSVRSHDRLCPAGRPKQYGP
CCEEEECCCCCCCCCEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCC
GTLRITHSLNSVLERWLPEQRLFLKSDKTTRFLRLRPATQLLGLGGIALVFGWSIIASSI
CEEEEHHHHHHHHHHHCCHHHEEEECCCCEEEEEECCHHHHHHCCHHHHHHHHHHHHHHH
LVIDAISAGSARDEARLAQSAFEARLTDLSAERDRRAAEAAAAQNRFAVALDQVSRMQSL
HEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
LLESEAQRRELETGLGAVQASLQDVVRAQHQAEALAAADGEAAPVRTAELQAALDILSGE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
LKQAASQRIEAVQQAEDAKRLADAVTLERDQIVARNDEILAQLEDAVSVSVKPLDDMFRA
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHEEEECCHHHHHHH
VGMNPDEILKTVRRGYSGQGGPLNPVSYSSSGNAEISQGEAKANEILITLDQVNSYRIAI
HCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEE
EKMPLAMPVKSAFRYTSPFGRRWGRAHEGIDMAAPVGTPVYATGEGTVIFAGWQRGYGNL
ECCCCHHHHHHHHHHCCHHHHHHCCHHCCCCCCCCCCCCEEECCCCEEEEEECCCCCCCE
IKIQHELGTETRYGHLSKIRVKAGQKVSRGSQIGDMGNTGRSTGSHLHYEVRVNGRAVNP
EEEEHHHCCCCCCCCHHHEEECCCCCHHCCCCCCCCCCCCCCCCCEEEEEEEECCEEECH
MSFIKAAQNVF
HHHHHHHHHCC
>Mature Secondary Structure 
PIALATGGYPPAARAWIGVNPPKGCAEAPPLLRFEHRSDLSVRSHDRLCPAGRPKQYGP
CEEEECCCCCCCCCEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCC
GTLRITHSLNSVLERWLPEQRLFLKSDKTTRFLRLRPATQLLGLGGIALVFGWSIIASSI
CEEEEHHHHHHHHHHHCCHHHEEEECCCCEEEEEECCHHHHHHCCHHHHHHHHHHHHHHH
LVIDAISAGSARDEARLAQSAFEARLTDLSAERDRRAAEAAAAQNRFAVALDQVSRMQSL
HEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
LLESEAQRRELETGLGAVQASLQDVVRAQHQAEALAAADGEAAPVRTAELQAALDILSGE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
LKQAASQRIEAVQQAEDAKRLADAVTLERDQIVARNDEILAQLEDAVSVSVKPLDDMFRA
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHEEEECCHHHHHHH
VGMNPDEILKTVRRGYSGQGGPLNPVSYSSSGNAEISQGEAKANEILITLDQVNSYRIAI
HCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEE
EKMPLAMPVKSAFRYTSPFGRRWGRAHEGIDMAAPVGTPVYATGEGTVIFAGWQRGYGNL
ECCCCHHHHHHHHHHCCHHHHHHCCHHCCCCCCCCCCCCEEECCCCEEEEEECCCCCCCE
IKIQHELGTETRYGHLSKIRVKAGQKVSRGSQIGDMGNTGRSTGSHLHYEVRVNGRAVNP
EEEEHHHCCCCCCCCHHHEEECCCCCHHCCCCCCCCCCCCCCCCCEEEEEEEECCEEECH
MSFIKAAQNVF
HHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]