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The map label for this gene is 119387177

Identifier: 119387177

GI number: 119387177

Start: 1686171

End: 1687565

Strand: Direct

Name: 119387177

Synonym: Pden_4472

Alternate gene names: NA

Gene position: 1686171-1687565 (Clockwise)

Preceding gene: 119387176

Following gene: 119387178

Centisome position: 97.46

GC content: 70.04

Gene sequence:

>1395_bases
ATGGCCACCCAGAAGATCTATGCCGGCGTCGCGCTGCGCGAGACGCGTGCCCGCGCCGGGCTGACCCAGCGCGCCTTCGC
CGACCGGCTGGGCGTTTCACTGCCCTATCTTTCGCAGATGGAGAACAACCACCGCCCGGTCTCGGCCGGGGTTCTGCTGC
GGCTCGCCTCGGAATTCTCGGTCGATCTGGGCGCCATGGCGGTGGGCGATGCCGAGCGCATGGTGATGGACATGGCCGAG
GCGCTGGCCGATCCGCTGTTCGACGCGACGCCGCCGCGTGCCGACCTGCGGCTGGCCGCGACCAATGCGCCGGCGCTGGC
CCGCGCGTTCCTAGACCTCTATCGCGCCCATCGCGAGGGGCAGGAGCGGCTGGCCGCACTGGACGAGGCGCTTGGCGCCG
GGGCGCAGAATGCCACGCCCTCGCCCTGGGAAGAGGTGCGCGACTTCTTCCATTACTGCGACAACTATATCGACGCCGTG
GACCGCGCCGCCGAGCATTTCGCCCGTTCGCGTCCCGACCTGCGCCCGCTGGACCGCGCCATCGCCGCGCTGGCCGAGCG
CGGCATCGAGGTGGTCATGGCCGAGTTGGGCAGCGGCCCGGTCTATCTGCGCGAGGGCAAGCGCATCACGCTGAACGCGG
CGGCCGAGCCCGCGACGCAAGCCTTCCAGCTGTTGCATCTGCTGGCGCTGGAAACGCGCGGCGACCTTCTGGAAGCGACG
CTGGAGCTTGCGCGGTTCCGCAGCGCCTCAGCCCGCGACATCGCGCGACTGGGGCTGGCGAACTATTTCGCCGGCGCGGC
GATGATGCCCTATGCCCAGTTTCTTGCCACCGCCCGGACCGAACGGCACGACCTGGAACGGCTGGCGCATCTGTTCCACG
CCTCGCTGGAACAGGTCGCGCATCGGCTCTCGACCCTGCAACGCGGCGGCGACCGGGGGGTGCCGTTCTTTTTCGTCCGC
GTCGATCAGGCGGGCACGATCACCAAGCGCCACTCCGCCACGCGGATGCAATTCGCCCGTTTCGGCGGCGCCTGCCCGCT
GTGGAACGTGCATCAGGCCTTCGAGACGCCCGGCCGCTTCCTGCGGCAACTGGCCGAGACGCCGGACGGCAAGCGTTACC
TGCTGCTGGCGCGGGACGTATCGAAACCCGCGGGCGCCTTTGGCGCCCCCGTGCGCCGCTTCGCCATCGGGCTGGGCTGC
GAGATCAGCCATGCCCGCGAGGTGGTCTATGCCGACGGGCTGGATATCGGCAATCCGCAGCTGTTCGAGCCGATCGGCGT
CTCTTGCCGGATCTGCCCCCGGCCGAACTGCCATCAGCGTTCCGTGCCCCCCGTGGACCGCCATATCCGCATCCCCCCGG
ATCGGCCCGGGCCGCTGCCCTATGAGATCGCCTGA

Upstream 100 bases:

>100_bases
GTCATGATCCGCGAAAGGCAGGTCATCAGCCGCGGCTGATCCCTCTTGCGGCAAGGCATTTGCAAAGCGTATCCCTGTCT
TTGCAAAGCCAGGAGGTCAG

Downstream 100 bases:

>100_bases
AACGGCCGCAAACGCCCCGAACCGCCGCACGGTTCCTGCGCCGGCCGCGAAAACCGCAAGGGAATCGCCCGGCCCGGCAC
CGGGATCAGGGCACCCTGCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 464; Mature: 463

Protein sequence:

>464_residues
MATQKIYAGVALRETRARAGLTQRAFADRLGVSLPYLSQMENNHRPVSAGVLLRLASEFSVDLGAMAVGDAERMVMDMAE
ALADPLFDATPPRADLRLAATNAPALARAFLDLYRAHREGQERLAALDEALGAGAQNATPSPWEEVRDFFHYCDNYIDAV
DRAAEHFARSRPDLRPLDRAIAALAERGIEVVMAELGSGPVYLREGKRITLNAAAEPATQAFQLLHLLALETRGDLLEAT
LELARFRSASARDIARLGLANYFAGAAMMPYAQFLATARTERHDLERLAHLFHASLEQVAHRLSTLQRGGDRGVPFFFVR
VDQAGTITKRHSATRMQFARFGGACPLWNVHQAFETPGRFLRQLAETPDGKRYLLLARDVSKPAGAFGAPVRRFAIGLGC
EISHAREVVYADGLDIGNPQLFEPIGVSCRICPRPNCHQRSVPPVDRHIRIPPDRPGPLPYEIA

Sequences:

>Translated_464_residues
MATQKIYAGVALRETRARAGLTQRAFADRLGVSLPYLSQMENNHRPVSAGVLLRLASEFSVDLGAMAVGDAERMVMDMAE
ALADPLFDATPPRADLRLAATNAPALARAFLDLYRAHREGQERLAALDEALGAGAQNATPSPWEEVRDFFHYCDNYIDAV
DRAAEHFARSRPDLRPLDRAIAALAERGIEVVMAELGSGPVYLREGKRITLNAAAEPATQAFQLLHLLALETRGDLLEAT
LELARFRSASARDIARLGLANYFAGAAMMPYAQFLATARTERHDLERLAHLFHASLEQVAHRLSTLQRGGDRGVPFFFVR
VDQAGTITKRHSATRMQFARFGGACPLWNVHQAFETPGRFLRQLAETPDGKRYLLLARDVSKPAGAFGAPVRRFAIGLGC
EISHAREVVYADGLDIGNPQLFEPIGVSCRICPRPNCHQRSVPPVDRHIRIPPDRPGPLPYEIA
>Mature_463_residues
ATQKIYAGVALRETRARAGLTQRAFADRLGVSLPYLSQMENNHRPVSAGVLLRLASEFSVDLGAMAVGDAERMVMDMAEA
LADPLFDATPPRADLRLAATNAPALARAFLDLYRAHREGQERLAALDEALGAGAQNATPSPWEEVRDFFHYCDNYIDAVD
RAAEHFARSRPDLRPLDRAIAALAERGIEVVMAELGSGPVYLREGKRITLNAAAEPATQAFQLLHLLALETRGDLLEATL
ELARFRSASARDIARLGLANYFAGAAMMPYAQFLATARTERHDLERLAHLFHASLEQVAHRLSTLQRGGDRGVPFFFVRV
DQAGTITKRHSATRMQFARFGGACPLWNVHQAFETPGRFLRQLAETPDGKRYLLLARDVSKPAGAFGAPVRRFAIGLGCE
ISHAREVVYADGLDIGNPQLFEPIGVSCRICPRPNCHQRSVPPVDRHIRIPPDRPGPLPYEIA

Specific function: Unknown

COG id: COG3800

COG function: function code R; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018653
- InterPro:   IPR010359
- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF09856 DUF2083; PF06114 DUF955; PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 51053; Mature: 50922

Theoretical pI: Translated: 8.16; Mature: 8.16

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATQKIYAGVALRETRARAGLTQRAFADRLGVSLPYLSQMENNHRPVSAGVLLRLASEFS
CCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHC
VDLGAMAVGDAERMVMDMAEALADPLFDATPPRADLRLAATNAPALARAFLDLYRAHREG
CCCCCEECCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHH
QERLAALDEALGAGAQNATPSPWEEVRDFFHYCDNYIDAVDRAAEHFARSRPDLRPLDRA
HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
IAALAERGIEVVMAELGSGPVYLREGKRITLNAAAEPATQAFQLLHLLALETRGDLLEAT
HHHHHHHHHHHHHHHHCCCCEEEECCCEEEEECCCCHHHHHHHHHHHHHHHHCHHHHHHH
LELARFRSASARDIARLGLANYFAGAAMMPYAQFLATARTERHDLERLAHLFHASLEQVA
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HRLSTLQRGGDRGVPFFFVRVDQAGTITKRHSATRMQFARFGGACPLWNVHQAFETPGRF
HHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHCCHHHH
LRQLAETPDGKRYLLLARDVSKPAGAFGAPVRRFAIGLGCEISHAREVVYADGLDIGNPQ
HHHHHCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHCCCCHHHHHHEEEECCCCCCCCC
LFEPIGVSCRICPRPNCHQRSVPPVDRHIRIPPDRPGPLPYEIA
CCCCCCCEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC
>Mature Secondary Structure 
ATQKIYAGVALRETRARAGLTQRAFADRLGVSLPYLSQMENNHRPVSAGVLLRLASEFS
CCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHC
VDLGAMAVGDAERMVMDMAEALADPLFDATPPRADLRLAATNAPALARAFLDLYRAHREG
CCCCCEECCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHH
QERLAALDEALGAGAQNATPSPWEEVRDFFHYCDNYIDAVDRAAEHFARSRPDLRPLDRA
HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
IAALAERGIEVVMAELGSGPVYLREGKRITLNAAAEPATQAFQLLHLLALETRGDLLEAT
HHHHHHHHHHHHHHHHCCCCEEEECCCEEEEECCCCHHHHHHHHHHHHHHHHCHHHHHHH
LELARFRSASARDIARLGLANYFAGAAMMPYAQFLATARTERHDLERLAHLFHASLEQVA
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HRLSTLQRGGDRGVPFFFVRVDQAGTITKRHSATRMQFARFGGACPLWNVHQAFETPGRF
HHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHCCHHHH
LRQLAETPDGKRYLLLARDVSKPAGAFGAPVRRFAIGLGCEISHAREVVYADGLDIGNPQ
HHHHHCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHCCCCHHHHHHEEEECCCCCCCCC
LFEPIGVSCRICPRPNCHQRSVPPVDRHIRIPPDRPGPLPYEIA
CCCCCCCEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]