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The map label for this gene is puuR [H]

Identifier: 119387120

GI number: 119387120

Start: 1616178

End: 1616819

Strand: Direct

Name: puuR [H]

Synonym: Pden_4415

Alternate gene names: 119387120

Gene position: 1616178-1616819 (Clockwise)

Preceding gene: 119387118

Following gene: 119387124

Centisome position: 93.42

GC content: 68.22

Gene sequence:

>642_bases
ATGCGGAACTGGCGCGCAATCCCCGGCCCTGATACCCTCTCGCAAAACGGCATCGGGGCAAGGATGAGCGATTTCGACGT
GGGCGCGCGGCTGAAAGAGCTGCGCAGCGCGGCAAACATGTCGCAGCGGCAGCTGGCCGAGGCTTCGGGCGTGCCGCATG
GCCAGGTCTCGATGATCGAGACCGGGCGCTCCAGCCCCTCGGTCGCCTCGCTGCGCAAGATCCTTGGCGGGCTGGGCGTC
ACCATGTCCGAGTTCTTCGAGCCGGACCTGCCGCAAAGCCCGCAGCCCTTCTTTACCCCGGCCGAACTGCGCGACCTGAC
CTCGCGGCTTTATTCCGCGGCGCAGGGGCCGGTCGGCCGCATGACCCTGCGCCAGGTCGGCGATGCGCGGCTGCACAACC
TGCAGATCCTGCACGAACGCTATGAGCCGGGCGCCGATACCGGCGAGACCATGCTGGCCCATCACGGCAGCGAGGGCGGC
ATCGTCGTCGCCGGCGAGATCGAGCTGACCGTGGCCGACCAGACCCGGGTGCTGAAGGCGGGGGACAGCTATCTGTTCGC
CTCGACCCAGCCGCATCGCTTTCGCAATGTCTCGGATCGCGAGGCGGTGGTCGTCAGCGCCTGCACCCCGCCCTATCTCT
AG

Upstream 100 bases:

>100_bases
ATCAAGTGCTTCGATTCCATATCCAGACCTCCATGCTGATGGAATCGGATTACATCATGCTCAATATATTGAGCAATGAT
TTTCTTCGATCTGCGACAGG

Downstream 100 bases:

>100_bases
CCCCTGATCTTTAGCCCTTGCGGGTGACCAGGCGGGTTTGCAGATAGGCGCCGATCGCCTCGGACCCGCCCTCGGTCCCC
ATGCCGGAATCGCCGATGCC

Product: XRE family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 213; Mature: 213

Protein sequence:

>213_residues
MRNWRAIPGPDTLSQNGIGARMSDFDVGARLKELRSAANMSQRQLAEASGVPHGQVSMIETGRSSPSVASLRKILGGLGV
TMSEFFEPDLPQSPQPFFTPAELRDLTSRLYSAAQGPVGRMTLRQVGDARLHNLQILHERYEPGADTGETMLAHHGSEGG
IVVAGEIELTVADQTRVLKAGDSYLFASTQPHRFRNVSDREAVVVSACTPPYL

Sequences:

>Translated_213_residues
MRNWRAIPGPDTLSQNGIGARMSDFDVGARLKELRSAANMSQRQLAEASGVPHGQVSMIETGRSSPSVASLRKILGGLGV
TMSEFFEPDLPQSPQPFFTPAELRDLTSRLYSAAQGPVGRMTLRQVGDARLHNLQILHERYEPGADTGETMLAHHGSEGG
IVVAGEIELTVADQTRVLKAGDSYLFASTQPHRFRNVSDREAVVVSACTPPYL
>Mature_213_residues
MRNWRAIPGPDTLSQNGIGARMSDFDVGARLKELRSAANMSQRQLAEASGVPHGQVSMIETGRSSPSVASLRKILGGLGV
TMSEFFEPDLPQSPQPFFTPAELRDLTSRLYSAAQGPVGRMTLRQVGDARLHNLQILHERYEPGADTGETMLAHHGSEGG
IVVAGEIELTVADQTRVLKAGDSYLFASTQPHRFRNVSDREAVVVSACTPPYL

Specific function: Represses puuD [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787557, Length=184, Percent_Identity=38.0434782608696, Blast_Score=110, Evalue=5e-26,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013096
- InterPro:   IPR011051
- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR014710 [H]

Pfam domain/function: PF07883 Cupin_2; PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 23069; Mature: 23069

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNWRAIPGPDTLSQNGIGARMSDFDVGARLKELRSAANMSQRQLAEASGVPHGQVSMIE
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCEEEEE
TGRSSPSVASLRKILGGLGVTMSEFFEPDLPQSPQPFFTPAELRDLTSRLYSAAQGPVGR
CCCCCCCHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHH
MTLRQVGDARLHNLQILHERYEPGADTGETMLAHHGSEGGIVVAGEIELTVADQTRVLKA
HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCEEEEEEEEEEECCCEEEEEC
GDSYLFASTQPHRFRNVSDREAVVVSACTPPYL
CCCEEEECCCCHHHCCCCCCCEEEEEECCCCCC
>Mature Secondary Structure
MRNWRAIPGPDTLSQNGIGARMSDFDVGARLKELRSAANMSQRQLAEASGVPHGQVSMIE
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCEEEEE
TGRSSPSVASLRKILGGLGVTMSEFFEPDLPQSPQPFFTPAELRDLTSRLYSAAQGPVGR
CCCCCCCHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHH
MTLRQVGDARLHNLQILHERYEPGADTGETMLAHHGSEGGIVVAGEIELTVADQTRVLKA
HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCEEEEEEEEEEECCCEEEEEC
GDSYLFASTQPHRFRNVSDREAVVVSACTPPYL
CCCEEEECCCCHHHCCCCCCCEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 1840553 [H]