Click here to switch to the map view.

The map label for this gene is ydeL [H]

Identifier: 119386979

GI number: 119386979

Start: 1446028

End: 1447527

Strand: Direct

Name: ydeL [H]

Synonym: Pden_4274

Alternate gene names: 119386979

Gene position: 1446028-1447527 (Clockwise)

Preceding gene: 119386978

Following gene: 119386985

Centisome position: 83.58

GC content: 70.53

Gene sequence:

>1500_bases
ATGCCGATTCCCCCCGACGCCTTTTTCCTGGACCATGCCGCCGGCCTGCCCCTGCAGGTCCAGCTGCGGCGCCAGATCAT
CGCGTCGGTGACGGCAGGCCGCTTTCGGCCGGGCGAAAAGCTGCCATCGACCCGCGCGCTGGCCCTGCATTTGGGCGTGG
CGCGGGTGACGGTGGCGCAGGCCTTCGCCGAGCTCGTCTCGACCGATTACCTGACCAGCCGCGACCGATCCGGCCATTAC
ATCTCGGACAGCATCGAGCGGCGGCTCGAGGCCGAGCCCCCGGCCCCCGACGCGCCGCGCTTCGACTGGGACAGCCAGCT
CGAAGGCCGTTTCGGCCGGGCGCAGCGCCGGGATCGCGAGCGCGACTGGCGCCGCTTCGCCTATCCCTTCGTCTATGGCC
AGGCCGACCCGGCGCTGGTCGACCATGCCGCCTGGCGCGACTGCGCCATGCGCGCGCTGGGGCGGCGCGAATTCGACAGC
CTCACCGGCGACCTCTACGACGCCGACGACCCGGAACTGGTCGACCATATCGCCCGCCAGATCCTGCCCCGGCGCGGCAT
CAGCGCCGGGCGGGACGAGATCCTGCTGACCATGGGGGCGCAGAACGCGCTGTGGCTGGTGGCGCAGCTGCTGTTGCGCC
CCGGCGCCTCCTGCGCGGTCGAGGACCCCTCCTATCCCGGCCAGCGCGAGATCCTGACCGCCAGCCGCGCCCGCATCCTG
CCGGTCCCGGTCGATGCCCGCGGCCTGCCGCCTCACGCCATCCCGCCCGGCATCTCGGCAGTCTTCACCACGGCCAGCCA
CCAATGCCCGACCAATTCCACCATGCCGCTGGCCCGGCGCAAGGAATTGCTGGCCCGCGCCCAGGCCCAGGGCTTCGCGG
TGGTCGAGGACGATTACGAATTCGAGATGTCCTTCGCCGGCGCACCCTCGCCCGCGCTCAAGGCCATCGACCGGGCCGGG
GCGGTGATCTATATCGGCTCGTTCTCGAAATCGGTCTTTCCGGGCGTGCGGCTGGGCTATGTCGTGGCCGATCCGCGCTT
CATCGCCGAGGCGCGGGCGCTGCGCGGCATGGTGCTGCGCCATCCGCCCGGCCATATGCAGCGGACGCTGGCGCATTTCC
TGTCGCTCGGCCATTACGACGCGCAGGCGAACCGGATGCGCCGCGCCTATGCGCAGCGGCGCGAGGTGATGCTGGCCGCC
ATCGCGCATGAGGGGCTGCGGCTTGCCTCGCCCGAGGCGACCGGCGGTTCCAGCTTCTGGCTGGCGACGCCCGAGGGGGT
GGATTCCGCCGAACTCGCAGCCCTGCTCAAGACGCGCGACGTACTGATCGAGCCGGGCGCGGCATTCTTCGCCGCACCTT
CGCGGGGCGGCGGTTTTTTCCGTCTTGCCTACTCGTCGGTCCCCGCGGACCGGATTGCTGCAGGGATCGGCCGGATCGGG
GCTGCGATGCGCGAGTTGTCGGCCCATTCTGGAGCTTTTGTGTCTATTTCGTCTGCATAG

Upstream 100 bases:

>100_bases
ATGCCATCGACAACGCCCTGACCAAGGTTTTTGCCTGACCCTTGATCCGCGGCGGCATTCGGGGGACTGATAAGCTCCGT
CAGCCGCCGCGGATCACTCC

Downstream 100 bases:

>100_bases
CGGTTATTGCTGTTGCGTTTACGATGTCCTTGACCGAGCAGGCGCGCGAGAGGTCGTTTGCGGGTTTTGCGAGGCCTTGC
AGGATGGGTCCGATGGCGGT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 499; Mature: 498

Protein sequence:

>499_residues
MPIPPDAFFLDHAAGLPLQVQLRRQIIASVTAGRFRPGEKLPSTRALALHLGVARVTVAQAFAELVSTDYLTSRDRSGHY
ISDSIERRLEAEPPAPDAPRFDWDSQLEGRFGRAQRRDRERDWRRFAYPFVYGQADPALVDHAAWRDCAMRALGRREFDS
LTGDLYDADDPELVDHIARQILPRRGISAGRDEILLTMGAQNALWLVAQLLLRPGASCAVEDPSYPGQREILTASRARIL
PVPVDARGLPPHAIPPGISAVFTTASHQCPTNSTMPLARRKELLARAQAQGFAVVEDDYEFEMSFAGAPSPALKAIDRAG
AVIYIGSFSKSVFPGVRLGYVVADPRFIAEARALRGMVLRHPPGHMQRTLAHFLSLGHYDAQANRMRRAYAQRREVMLAA
IAHEGLRLASPEATGGSSFWLATPEGVDSAELAALLKTRDVLIEPGAAFFAAPSRGGGFFRLAYSSVPADRIAAGIGRIG
AAMRELSAHSGAFVSISSA

Sequences:

>Translated_499_residues
MPIPPDAFFLDHAAGLPLQVQLRRQIIASVTAGRFRPGEKLPSTRALALHLGVARVTVAQAFAELVSTDYLTSRDRSGHY
ISDSIERRLEAEPPAPDAPRFDWDSQLEGRFGRAQRRDRERDWRRFAYPFVYGQADPALVDHAAWRDCAMRALGRREFDS
LTGDLYDADDPELVDHIARQILPRRGISAGRDEILLTMGAQNALWLVAQLLLRPGASCAVEDPSYPGQREILTASRARIL
PVPVDARGLPPHAIPPGISAVFTTASHQCPTNSTMPLARRKELLARAQAQGFAVVEDDYEFEMSFAGAPSPALKAIDRAG
AVIYIGSFSKSVFPGVRLGYVVADPRFIAEARALRGMVLRHPPGHMQRTLAHFLSLGHYDAQANRMRRAYAQRREVMLAA
IAHEGLRLASPEATGGSSFWLATPEGVDSAELAALLKTRDVLIEPGAAFFAAPSRGGGFFRLAYSSVPADRIAAGIGRIG
AAMRELSAHSGAFVSISSA
>Mature_498_residues
PIPPDAFFLDHAAGLPLQVQLRRQIIASVTAGRFRPGEKLPSTRALALHLGVARVTVAQAFAELVSTDYLTSRDRSGHYI
SDSIERRLEAEPPAPDAPRFDWDSQLEGRFGRAQRRDRERDWRRFAYPFVYGQADPALVDHAAWRDCAMRALGRREFDSL
TGDLYDADDPELVDHIARQILPRRGISAGRDEILLTMGAQNALWLVAQLLLRPGASCAVEDPSYPGQREILTASRARILP
VPVDARGLPPHAIPPGISAVFTTASHQCPTNSTMPLARRKELLARAQAQGFAVVEDDYEFEMSFAGAPSPALKAIDRAGA
VIYIGSFSKSVFPGVRLGYVVADPRFIAEARALRGMVLRHPPGHMQRTLAHFLSLGHYDAQANRMRRAYAQRREVMLAAI
AHEGLRLASPEATGGSSFWLATPEGVDSAELAALLKTRDVLIEPGAAFFAAPSRGGGFFRLAYSSVPADRIAAGIGRIGA
AMRELSAHSGAFVSISSA

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=320, Percent_Identity=23.75, Blast_Score=89, Evalue=1e-17,
Organism=Homo sapiens, GI33469970, Length=320, Percent_Identity=23.75, Blast_Score=89, Evalue=1e-17,
Organism=Escherichia coli, GI1787710, Length=491, Percent_Identity=27.2912423625255, Blast_Score=141, Evalue=1e-34,
Organism=Escherichia coli, GI1790797, Length=442, Percent_Identity=25.7918552036199, Blast_Score=126, Evalue=4e-30,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 54342; Mature: 54210

Theoretical pI: Translated: 9.25; Mature: 9.25

Prosite motif: PS50084 KH_TYPE_1 ; PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPIPPDAFFLDHAAGLPLQVQLRRQIIASVTAGRFRPGEKLPSTRALALHLGVARVTVAQ
CCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHH
AFAELVSTDYLTSRDRSGHYISDSIERRLEAEPPAPDAPRFDWDSQLEGRFGRAQRRDRE
HHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
RDWRRFAYPFVYGQADPALVDHAAWRDCAMRALGRREFDSLTGDLYDADDPELVDHIARQ
HHHHHHHCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
ILPRRGISAGRDEILLTMGAQNALWLVAQLLLRPGASCAVEDPSYPGQREILTASRARIL
HHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHCCCEEE
PVPVDARGLPPHAIPPGISAVFTTASHQCPTNSTMPLARRKELLARAQAQGFAVVEDDYE
ECCCCCCCCCCCCCCCCCHHHEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCE
FEMSFAGAPSPALKAIDRAGAVIYIGSFSKSVFPGVRLGYVVADPRFIAEARALRGMVLR
EEEEECCCCCHHHHHHHHCCCEEEEECCCCCCCCCCEEEEEEECCHHHHHHHHHHCHHEE
HPPGHMQRTLAHFLSLGHYDAQANRMRRAYAQRREVMLAAIAHEGLRLASPEATGGSSFW
CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCEEE
LATPEGVDSAELAALLKTRDVLIEPGAAFFAAPSRGGGFFRLAYSSVPADRIAAGIGRIG
EECCCCCCHHHHHHHHHHHHHEECCCCCEEECCCCCCCEEEEEECCCCHHHHHHHHHHHH
AAMRELSAHSGAFVSISSA
HHHHHHHCCCCCEEEECCC
>Mature Secondary Structure 
PIPPDAFFLDHAAGLPLQVQLRRQIIASVTAGRFRPGEKLPSTRALALHLGVARVTVAQ
CCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHH
AFAELVSTDYLTSRDRSGHYISDSIERRLEAEPPAPDAPRFDWDSQLEGRFGRAQRRDRE
HHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
RDWRRFAYPFVYGQADPALVDHAAWRDCAMRALGRREFDSLTGDLYDADDPELVDHIARQ
HHHHHHHCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
ILPRRGISAGRDEILLTMGAQNALWLVAQLLLRPGASCAVEDPSYPGQREILTASRARIL
HHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHCCCEEE
PVPVDARGLPPHAIPPGISAVFTTASHQCPTNSTMPLARRKELLARAQAQGFAVVEDDYE
ECCCCCCCCCCCCCCCCCHHHEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCE
FEMSFAGAPSPALKAIDRAGAVIYIGSFSKSVFPGVRLGYVVADPRFIAEARALRGMVLR
EEEEECCCCCHHHHHHHHCCCEEEEECCCCCCCCCCEEEEEEECCHHHHHHHHHHCHHEE
HPPGHMQRTLAHFLSLGHYDAQANRMRRAYAQRREVMLAAIAHEGLRLASPEATGGSSFW
CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCEEE
LATPEGVDSAELAALLKTRDVLIEPGAAFFAAPSRGGGFFRLAYSSVPADRIAAGIGRIG
EECCCCCCHHHHHHHHHHHHHEECCCCCEEECCCCCCCEEEEEECCCCHHHHHHHHHHHH
AAMRELSAHSGAFVSISSA
HHHHHHHCCCCCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]