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The map label for this gene is 119386862

Identifier: 119386862

GI number: 119386862

Start: 1313861

End: 1314571

Strand: Direct

Name: 119386862

Synonym: Pden_4157

Alternate gene names: NA

Gene position: 1313861-1314571 (Clockwise)

Preceding gene: 119386861

Following gene: 119386863

Centisome position: 75.94

GC content: 68.21

Gene sequence:

>711_bases
ATGAGACGGTGCGCCATCCCTGCTGCGCTGTCCATTGCGGTCGCGTCCGGCGCCTTTCCGGTCGCGGCCAGCGAGATCGG
CGATCCGCTGCGCGGGGCCGAACTGTTCGCGGAGGAATGCTCCGCCTGCCACCGCATCGGACCGGGGGCGACGGATGCCA
CCGGCCCAAGGCTGAACGGCATCTTCGGCCGCCGCGCGGGCAGCCTTGCCGGCTTCAACTATTCCAGGGCGATGCTGCGC
ATGGGCAATGACGGCCTGAGATGGACCCTGCCGACGCTGGACGCCTATATCGAGAACCCGAAGGCGCTGGTTTCGGGCAC
GCGCATGGCCTATCGCGGGCTGGCCGATGCGCAGGCAAGGGGCGATCTGATGGCCTATCTGCGCGCCTATTCCGACCGGC
CGCAGGACATCCCGGAAGCCGAGCCCACCGCCCGCGCCAGCGCACCGGTCCTGCCCGGGTGGATACTGGCCTTGCAGGGC
GATCCCGGGTTCGGCGAATACCTGTCCGCGGAATGCACGACCTGCCACCAGCGCGACGGATCGGATCAGGGCATCCCCTC
GATCGCGGGCTGGCCGGAGCAGGATTTCGTGGTGGCCATGCATGCCTATCGGCAAAAGCTGCGGCCGCATCCGGTGATGC
AGATGATGGCCGGGCGCCTGAGCGAAGAGGAAATCGCGGCGCTCGCGGCCTATTTCGCCACGCTCGAATGA

Upstream 100 bases:

>100_bases
GGGCTTCATGAAAGGGACCAAGATGTCCTTTGCCGGGCTGAAGAAAGAGGACGAGCGCGCCGCCGTCATCGCCTATCTCG
CCACGTTCGACGAATAGCGG

Downstream 100 bases:

>100_bases
CCGAAGGCGGCCGGGGCAAAGGCCCCGCAGCCGCAAACAGGAAAGGAACGAGACCATGATCCTGACCAGACGAGAACTGA
TCGCCGGCAGCGCGGCCGCG

Product: cytochrome c, class I

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 236

Protein sequence:

>236_residues
MRRCAIPAALSIAVASGAFPVAASEIGDPLRGAELFAEECSACHRIGPGATDATGPRLNGIFGRRAGSLAGFNYSRAMLR
MGNDGLRWTLPTLDAYIENPKALVSGTRMAYRGLADAQARGDLMAYLRAYSDRPQDIPEAEPTARASAPVLPGWILALQG
DPGFGEYLSAECTTCHQRDGSDQGIPSIAGWPEQDFVVAMHAYRQKLRPHPVMQMMAGRLSEEEIAALAAYFATLE

Sequences:

>Translated_236_residues
MRRCAIPAALSIAVASGAFPVAASEIGDPLRGAELFAEECSACHRIGPGATDATGPRLNGIFGRRAGSLAGFNYSRAMLR
MGNDGLRWTLPTLDAYIENPKALVSGTRMAYRGLADAQARGDLMAYLRAYSDRPQDIPEAEPTARASAPVLPGWILALQG
DPGFGEYLSAECTTCHQRDGSDQGIPSIAGWPEQDFVVAMHAYRQKLRPHPVMQMMAGRLSEEEIAALAAYFATLE
>Mature_236_residues
MRRCAIPAALSIAVASGAFPVAASEIGDPLRGAELFAEECSACHRIGPGATDATGPRLNGIFGRRAGSLAGFNYSRAMLR
MGNDGLRWTLPTLDAYIENPKALVSGTRMAYRGLADAQARGDLMAYLRAYSDRPQDIPEAEPTARASAPVLPGWILALQG
DPGFGEYLSAECTTCHQRDGSDQGIPSIAGWPEQDFVVAMHAYRQKLRPHPVMQMMAGRLSEEEIAALAAYFATLE

Specific function: Cytochrome c2 is found mainly in purple, non-sulfur, photosynthetic bacteria where it functions as the electron donor to the oxidized bacteriochlorophyll in the photophosphorylation pathway. However, it may also have a role in the respiratory chain and is

COG id: COG3474

COG function: function code C; Cytochrome c2

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 cytochrome c domain [H]

Homologues:

Organism=Homo sapiens, GI11128019, Length=107, Percent_Identity=38.3177570093458, Blast_Score=94, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17539604, Length=105, Percent_Identity=40, Blast_Score=87, Evalue=6e-18,
Organism=Caenorhabditis elegans, GI17566554, Length=101, Percent_Identity=39.6039603960396, Blast_Score=86, Evalue=2e-17,
Organism=Saccharomyces cerevisiae, GI6320796, Length=101, Percent_Identity=37.6237623762376, Blast_Score=90, Evalue=4e-19,
Organism=Saccharomyces cerevisiae, GI6322508, Length=102, Percent_Identity=36.2745098039216, Blast_Score=83, Evalue=4e-17,
Organism=Drosophila melanogaster, GI17137228, Length=103, Percent_Identity=40.7766990291262, Blast_Score=91, Evalue=5e-19,
Organism=Drosophila melanogaster, GI17137204, Length=103, Percent_Identity=36.8932038834951, Blast_Score=91, Evalue=7e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002327
- InterPro:   IPR009056
- InterPro:   IPR003088 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 25300; Mature: 25300

Theoretical pI: Translated: 5.69; Mature: 5.69

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRCAIPAALSIAVASGAFPVAASEIGDPLRGAELFAEECSACHRIGPGATDATGPRLNG
CCCCCCHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
IFGRRAGSLAGFNYSRAMLRMGNDGLRWTLPTLDAYIENPKALVSGTRMAYRGLADAQAR
HHHCCCCCCCCCCHHHHHHHCCCCCCEEEHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHH
GDLMAYLRAYSDRPQDIPEAEPTARASAPVLPGWILALQGDPGFGEYLSAECTTCHQRDG
HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCC
SDQGIPSIAGWPEQDFVVAMHAYRQKLRPHPVMQMMAGRLSEEEIAALAAYFATLE
CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRRCAIPAALSIAVASGAFPVAASEIGDPLRGAELFAEECSACHRIGPGATDATGPRLNG
CCCCCCHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
IFGRRAGSLAGFNYSRAMLRMGNDGLRWTLPTLDAYIENPKALVSGTRMAYRGLADAQAR
HHHCCCCCCCCCCHHHHHHHCCCCCCEEEHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHH
GDLMAYLRAYSDRPQDIPEAEPTARASAPVLPGWILALQGDPGFGEYLSAECTTCHQRDG
HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCC
SDQGIPSIAGWPEQDFVVAMHAYRQKLRPHPVMQMMAGRLSEEEIAALAAYFATLE
CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 174109 [H]