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The map label for this gene is 119386861

Identifier: 119386861

GI number: 119386861

Start: 1312709

End: 1313857

Strand: Direct

Name: 119386861

Synonym: Pden_4156

Alternate gene names: NA

Gene position: 1312709-1313857 (Clockwise)

Preceding gene: 119386860

Following gene: 119386862

Centisome position: 75.87

GC content: 68.23

Gene sequence:

>1149_bases
ATGTCGAGGTCGCATAAGCTGTTCTTCGCCTCGCTGCTGGCGGCATCGGCGCTTGCCGGCCCGGCCATGGCCGACAGGCT
GGGACTGGGCCGCGAGGCCCTGCCCGAGGAAATCAGCGCCTGGGACGTGGCGGTCCTGCCCGATGGCCAGGGGCTGCGCC
CCGGCTCGGGCGACGTCATGACCGGGGACGAGCTTTTCGCCGACAACTGCGCCTCGTGCCACGGCGATTTCGCCGAGGGG
CTGGACAGCTGGCCCGTGCTGGCGGGCGGCGACGGCAGCCTGACCGACCCGCGCCCGGTCAAGACCATCGGCAGCTACTG
GCCGCATCTTTCGACGGTCTATGACTATGTCCACCGCTCGATGCCCTTCGGCTCGGCGCAGACCCTGTCGGTCGATGATA
CCTATGCGATCACCGCCTTCCTGCTTTACTCCAACGGGCTGGTGGAGGACGATTTCGTCCTGACGCATGAGAACTTCACC
CAGGTCGTGCTGCCCAATGCCGAGGGCTTCTATCCCGACGACCGGCCCGAGACGGAATATCCGCTGTTCTCGAAAGAGCC
CTGCATGACGGATTGCGCCGCCGCGGTCGAGATCGCCAAGCGCGCGGTCGACCTGAACGTGACGCCCGAGGATGCCGACG
GGCGCCCGGCCGGCACCATGCCCGACATCGGCGCAGGCGCCGCACCGGCCGAACCTGCCGAGCCGGTCGAAAAGAAGGCC
GAAGCCGCGCCGGCCGAGGCACCGGCCGCCGCGCGCGAGAGCGTGGTCAAGACCGCCGCCGTCGCGCCGGAAGCCCCGGC
CCCTGCCACGGCAGACACCGCCACCGATCCCGCGCTGGTCGCGGCGGGCGAAAAGGTCTTCAAGAAATGCACCGCCTGCC
ACAAACTCGGCGAGGGCGCGAAGAACGGCACCGGCCCGCTGCTGAACGGCATCGTCGGCCGCCCGGCGGGCGAGATCGAG
GGCTTCAAGTATTCCAAGCCCCTGCTCGCCATGGCCTCGGACGGGCTGGTCTGGGACGATGCCGCGCTGCACGCCTTTCT
GGAAAACCCCAAGGGCTTCATGAAAGGGACCAAGATGTCCTTTGCCGGGCTGAAGAAAGAGGACGAGCGCGCCGCCGTCA
TCGCCTATCTCGCCACGTTCGACGAATAG

Upstream 100 bases:

>100_bases
CCGACCAAGGACGCGCTGCGTGCCATCCGCGGCCGCAACAACGTCTATCACAACAACGCCATCCAGACCTGGTGGGTCAA
GGCCGACGGGGAGGTCGAGA

Downstream 100 bases:

>100_bases
CGGATGAGACGGTGCGCCATCCCTGCTGCGCTGTCCATTGCGGTCGCGTCCGGCGCCTTTCCGGTCGCGGCCAGCGAGAT
CGGCGATCCGCTGCGCGGGG

Product: cytochrome c, class I

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 382; Mature: 381

Protein sequence:

>382_residues
MSRSHKLFFASLLAASALAGPAMADRLGLGREALPEEISAWDVAVLPDGQGLRPGSGDVMTGDELFADNCASCHGDFAEG
LDSWPVLAGGDGSLTDPRPVKTIGSYWPHLSTVYDYVHRSMPFGSAQTLSVDDTYAITAFLLYSNGLVEDDFVLTHENFT
QVVLPNAEGFYPDDRPETEYPLFSKEPCMTDCAAAVEIAKRAVDLNVTPEDADGRPAGTMPDIGAGAAPAEPAEPVEKKA
EAAPAEAPAAARESVVKTAAVAPEAPAPATADTATDPALVAAGEKVFKKCTACHKLGEGAKNGTGPLLNGIVGRPAGEIE
GFKYSKPLLAMASDGLVWDDAALHAFLENPKGFMKGTKMSFAGLKKEDERAAVIAYLATFDE

Sequences:

>Translated_382_residues
MSRSHKLFFASLLAASALAGPAMADRLGLGREALPEEISAWDVAVLPDGQGLRPGSGDVMTGDELFADNCASCHGDFAEG
LDSWPVLAGGDGSLTDPRPVKTIGSYWPHLSTVYDYVHRSMPFGSAQTLSVDDTYAITAFLLYSNGLVEDDFVLTHENFT
QVVLPNAEGFYPDDRPETEYPLFSKEPCMTDCAAAVEIAKRAVDLNVTPEDADGRPAGTMPDIGAGAAPAEPAEPVEKKA
EAAPAEAPAAARESVVKTAAVAPEAPAPATADTATDPALVAAGEKVFKKCTACHKLGEGAKNGTGPLLNGIVGRPAGEIE
GFKYSKPLLAMASDGLVWDDAALHAFLENPKGFMKGTKMSFAGLKKEDERAAVIAYLATFDE
>Mature_381_residues
SRSHKLFFASLLAASALAGPAMADRLGLGREALPEEISAWDVAVLPDGQGLRPGSGDVMTGDELFADNCASCHGDFAEGL
DSWPVLAGGDGSLTDPRPVKTIGSYWPHLSTVYDYVHRSMPFGSAQTLSVDDTYAITAFLLYSNGLVEDDFVLTHENFTQ
VVLPNAEGFYPDDRPETEYPLFSKEPCMTDCAAAVEIAKRAVDLNVTPEDADGRPAGTMPDIGAGAAPAEPAEPVEKKAE
AAPAEAPAAARESVVKTAAVAPEAPAPATADTATDPALVAAGEKVFKKCTACHKLGEGAKNGTGPLLNGIVGRPAGEIEG
FKYSKPLLAMASDGLVWDDAALHAFLENPKGFMKGTKMSFAGLKKEDERAAVIAYLATFDE

Specific function: Cytochrome c2 is found mainly in purple, non-sulfur, photosynthetic bacteria where it functions as the electron donor to the oxidized bacteriochlorophyll in the photophosphorylation pathway. However, it may also have a role in the respiratory chain and is

COG id: COG3474

COG function: function code C; Cytochrome c2

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c family [H]

Homologues:

Organism=Homo sapiens, GI11128019, Length=99, Percent_Identity=44.4444444444444, Blast_Score=94, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI17566554, Length=112, Percent_Identity=42.8571428571429, Blast_Score=86, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI17539604, Length=96, Percent_Identity=46.875, Blast_Score=86, Evalue=4e-17,
Organism=Saccharomyces cerevisiae, GI6320796, Length=110, Percent_Identity=39.0909090909091, Blast_Score=88, Evalue=3e-18,
Organism=Saccharomyces cerevisiae, GI6322508, Length=96, Percent_Identity=40.625, Blast_Score=82, Evalue=2e-16,
Organism=Drosophila melanogaster, GI17137228, Length=101, Percent_Identity=43.5643564356436, Blast_Score=89, Evalue=4e-18,
Organism=Drosophila melanogaster, GI17137204, Length=98, Percent_Identity=43.8775510204082, Blast_Score=86, Evalue=6e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002327
- InterPro:   IPR009056
- InterPro:   IPR003088 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 40049; Mature: 39918

Theoretical pI: Translated: 4.31; Mature: 4.31

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRSHKLFFASLLAASALAGPAMADRLGLGREALPEEISAWDVAVLPDGQGLRPGSGDVM
CCCCHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHCCCEEEECCCCCCCCCCCCCEE
TGDELFADNCASCHGDFAEGLDSWPVLAGGDGSLTDPRPVKTIGSYWPHLSTVYDYVHRS
CCHHHHHCCHHHCCCHHHHCCCCCCEEECCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHH
MPFGSAQTLSVDDTYAITAFLLYSNGLVEDDFVLTHENFTQVVLPNAEGFYPDDRPETEY
CCCCCCEEEECCCHHHHHHHHHHCCCCCCCCEEEECCCCEEEEECCCCCCCCCCCCCCCC
PLFSKEPCMTDCAAAVEIAKRAVDLNVTPEDADGRPAGTMPDIGAGAAPAEPAEPVEKKA
CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
EAAPAEAPAAARESVVKTAAVAPEAPAPATADTATDPALVAAGEKVFKKCTACHKLGEGA
HCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
KNGTGPLLNGIVGRPAGEIEGFKYSKPLLAMASDGLVWDDAALHAFLENPKGFMKGTKMS
CCCCCHHHHHHHCCCCCCCCCCCCCCCHHEEECCCCEECHHHHHHHHHCCHHHHCCCCHH
FAGLKKEDERAAVIAYLATFDE
HHCCCCCCCHHEEEEEEHHCCC
>Mature Secondary Structure 
SRSHKLFFASLLAASALAGPAMADRLGLGREALPEEISAWDVAVLPDGQGLRPGSGDVM
CCCHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHCCCEEEECCCCCCCCCCCCCEE
TGDELFADNCASCHGDFAEGLDSWPVLAGGDGSLTDPRPVKTIGSYWPHLSTVYDYVHRS
CCHHHHHCCHHHCCCHHHHCCCCCCEEECCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHH
MPFGSAQTLSVDDTYAITAFLLYSNGLVEDDFVLTHENFTQVVLPNAEGFYPDDRPETEY
CCCCCCEEEECCCHHHHHHHHHHCCCCCCCCEEEECCCCEEEEECCCCCCCCCCCCCCCC
PLFSKEPCMTDCAAAVEIAKRAVDLNVTPEDADGRPAGTMPDIGAGAAPAEPAEPVEKKA
CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
EAAPAEAPAAARESVVKTAAVAPEAPAPATADTATDPALVAAGEKVFKKCTACHKLGEGA
HCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
KNGTGPLLNGIVGRPAGEIEGFKYSKPLLAMASDGLVWDDAALHAFLENPKGFMKGTKMS
CCCCCHHHHHHHCCCCCCCCCCCCCCCHHEEECCCCEECHHHHHHHHHCCHHHHCCCCHH
FAGLKKEDERAAVIAYLATFDE
HHCCCCCCCHHEEEEEEHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA