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The map label for this gene is omp85 [H]

Identifier: 119386706

GI number: 119386706

Start: 1138068

End: 1140416

Strand: Direct

Name: omp85 [H]

Synonym: Pden_3999

Alternate gene names: 119386706

Gene position: 1138068-1140416 (Clockwise)

Preceding gene: 119386705

Following gene: 119386707

Centisome position: 65.78

GC content: 65.86

Gene sequence:

>2349_bases
ATGACGGACAGGAAACTCGGCAAGGGCGCGCTGGCGCTGATCTCGGCGCTGGCAGTGGCCGCGCCGGTCGCGATGGTGGC
GACCCCCGCCTCGGCCTATGTCTTCAGCAACGTGCGGATCGAGGGCAACCAGCGCATCGAACCCGCGACGATCCTGTCCT
ATCTGGATCTGCCGCGCGGCCAGGACGTCTCGGCCGGGGCGCTGAACGACGCCATGCAGCGGCTTCAGAACTCGGGCCTG
TTCGAGACGGTCGAACTGGTGCCCTCGGGCGGGACGCTGGTGGTTCGGGTGGCGGAATATCCCACCATCAACACCGTCGC
CTTCGAGGGCAACAGGCGGCTCAAGAACGAGAACCTGGCCGAGATCGTCAAGTCGCAGTCGCGCCGGGTCTATTCCCCCG
CCCAGGCCGAGGCCGATGCCGCTGCGATCAGCCAGGTCTATGCCTCGCAGGGGCGCCTGGCCGCCCGCGTCGATCCGCGC
ATCATCCGCCGCGGCAGCAACCAGGTCGATCTGGTCTTCGAGATCCGCGAAGGCGACGTGACCGAGATCGAGCGCATCGG
TTTCGTCGGCAACCGCGCCTTTTCCGACCGCCGGTTGCGCAACGTGCTGCAAACCAAGCAGGCCGGCATCCTGCGCACCT
TCATCCGCCGCGACACCTTCGCCCCCGAGCGGGTGCCGCTGGACGAGAAGCTGCTGACCGATTTCTACCGCTCGCGCGGC
TATGCCGATTTCCGCGTGCAGGCGGTGGCGCCGGAACTGGCTCGGGAACGCGACGCCTTCTACATCACCTTCCAGATCCA
TGAAGGCCCGCGCTATACCTTCGGTACCATCAACACCGTCAGCGAAATCCCGGGCGTCGATGCGACGGAATTCGCCGCCC
AGAACCGGGTCAAGCGCGGCGCGGTCTACAACCCGACCGACATCGACACCACCATCCGCCGGATGGAGGCGCTGGCGCTG
CGCAAGGGGCTGAACTTCGTCAATATCGAGCCGCGCGTCACCCGCAACGAGCGCAGCCAGACCCTGGACCTCACCTTTGC
CCTGACGCGCGGGCCACGCGTCTTCGTCGAGCGCATCGACATCGAGGGCAACACCACCACGCTGGACGAGGTGATCCGCC
GCCAGTTCGCCACGGTCGAGGGCGACCCCTTCAACCCGCGCGAGATCCGCAATTCGGCCGAACGGCTGCGCGCGCTTGGC
TTTTTCTCGGATGTGCAGGCGGAAAGCCGTCCGGGCTCGTCGCCCGAGCAGGTCATCGTCGACGTGAACGTCGAGGAACA
GCCGACCGGCAGCCTGAACTTCGGCGTCAGCTACGGCGCCGCGACCGGCGTCGGCTTCAACATCTCGCTGTCGGAAAAGA
ACTTCCTGGGCCGCGGGCAGCAGGTGGACCTGGCCTTTTCGACCGGCACGGATACGCAAAGCTCGGGCCTGACCTTCGTC
GAGCCCTATTTCCTGGGACGCAACCTGCGCGCCCGGGCCCAGGCCTGGTACAACACCACCGACCGGCTGAATTCGGACTA
CAACACCCGCACCGTCGGCTTCCTGACCGGGATCGAGTTCCCGGTCTCGGAAAACGGCCGAGTGGAGCTGCGCTACAAGC
TCAGCAAGGACACGCTGTTCGACGTCGAAGAGATCCACATGGATTCGGAAAGCAGCCGGCTGGTCGGCTCGTCGCCGATC
CTCTTCGACGAGCAGGGCGGCTTCTTCACCTCGGCAGTCGGCTATACCTACAGCTATGACAGCCGCATCGCCGGGCTGGA
TCCGGTGACCAGCTACCGGCTGCGCGCCGGCCAGGATTTCGCCGGGCTGGGCGGTGACGTGAAGTCTGTCACCAGCACGC
TTTACGCCGGCGTCGAAAGCCGCGCATGGCGCGAAAACGTGACCATGCTGGCCGAGCTGGAGTTTGGCGCGGTGCATATG
CTGGACGACCAGAACAGCCGCTTCCTGAACCGCTTTACCGGCAACGGCAAGATTCGCGGCTTTGAGCCGAACGGGCTGGG
ACCGCGCGACCTGAACGCGCCGAACCAGGACGCGCTTGGCGGCAACTACTTCTGGGCGCTGCGCACCGAGTTGCAGTTCC
CGCTGGGCCTGCCCGAGGAATATGGCATCACCGGCGGGCTTTTCGCCGATGCCGGTTCTGTCTGGGGGCTGGACAACACC
ACCGGCGCGACGCCCGGCGACTATCCGCAAGAGGTCGACGACGGCATGAAGGTCCGTGCCGCGGTCGGCGCCTCGATCTT
CTGGACCACGCCGATCGGCCCGTTGCGCTTCAACTTCGCCAAGGCCCTCAAGAAAGAGGACTATGACGAGGAGCAGACCT
TCGACCTGACCATCTCGACCCGGTTCTGA

Upstream 100 bases:

>100_bases
GCGCTAGGCTTTTGACAGTGTAGGCCGCTTCGCTGTATCCATCGGGGCAAATATGGCGGGACCAACCCGCCGGGCAACGC
ATTATTCGCGAGGGGCGGCG

Downstream 100 bases:

>100_bases
TGGGCCGGGGGCGCGGCATCGCGGCGCTGGCGCTGGCGACCCTGCTGGCGCTGCCTTCGGGCGCGCTGGCCCAGCAGGCC
GCCCCCGTGCCGGTGCCCTC

Product: surface antigen (D15)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 782; Mature: 781

Protein sequence:

>782_residues
MTDRKLGKGALALISALAVAAPVAMVATPASAYVFSNVRIEGNQRIEPATILSYLDLPRGQDVSAGALNDAMQRLQNSGL
FETVELVPSGGTLVVRVAEYPTINTVAFEGNRRLKNENLAEIVKSQSRRVYSPAQAEADAAAISQVYASQGRLAARVDPR
IIRRGSNQVDLVFEIREGDVTEIERIGFVGNRAFSDRRLRNVLQTKQAGILRTFIRRDTFAPERVPLDEKLLTDFYRSRG
YADFRVQAVAPELARERDAFYITFQIHEGPRYTFGTINTVSEIPGVDATEFAAQNRVKRGAVYNPTDIDTTIRRMEALAL
RKGLNFVNIEPRVTRNERSQTLDLTFALTRGPRVFVERIDIEGNTTTLDEVIRRQFATVEGDPFNPREIRNSAERLRALG
FFSDVQAESRPGSSPEQVIVDVNVEEQPTGSLNFGVSYGAATGVGFNISLSEKNFLGRGQQVDLAFSTGTDTQSSGLTFV
EPYFLGRNLRARAQAWYNTTDRLNSDYNTRTVGFLTGIEFPVSENGRVELRYKLSKDTLFDVEEIHMDSESSRLVGSSPI
LFDEQGGFFTSAVGYTYSYDSRIAGLDPVTSYRLRAGQDFAGLGGDVKSVTSTLYAGVESRAWRENVTMLAELEFGAVHM
LDDQNSRFLNRFTGNGKIRGFEPNGLGPRDLNAPNQDALGGNYFWALRTELQFPLGLPEEYGITGGLFADAGSVWGLDNT
TGATPGDYPQEVDDGMKVRAAVGASIFWTTPIGPLRFNFAKALKKEDYDEEQTFDLTISTRF

Sequences:

>Translated_782_residues
MTDRKLGKGALALISALAVAAPVAMVATPASAYVFSNVRIEGNQRIEPATILSYLDLPRGQDVSAGALNDAMQRLQNSGL
FETVELVPSGGTLVVRVAEYPTINTVAFEGNRRLKNENLAEIVKSQSRRVYSPAQAEADAAAISQVYASQGRLAARVDPR
IIRRGSNQVDLVFEIREGDVTEIERIGFVGNRAFSDRRLRNVLQTKQAGILRTFIRRDTFAPERVPLDEKLLTDFYRSRG
YADFRVQAVAPELARERDAFYITFQIHEGPRYTFGTINTVSEIPGVDATEFAAQNRVKRGAVYNPTDIDTTIRRMEALAL
RKGLNFVNIEPRVTRNERSQTLDLTFALTRGPRVFVERIDIEGNTTTLDEVIRRQFATVEGDPFNPREIRNSAERLRALG
FFSDVQAESRPGSSPEQVIVDVNVEEQPTGSLNFGVSYGAATGVGFNISLSEKNFLGRGQQVDLAFSTGTDTQSSGLTFV
EPYFLGRNLRARAQAWYNTTDRLNSDYNTRTVGFLTGIEFPVSENGRVELRYKLSKDTLFDVEEIHMDSESSRLVGSSPI
LFDEQGGFFTSAVGYTYSYDSRIAGLDPVTSYRLRAGQDFAGLGGDVKSVTSTLYAGVESRAWRENVTMLAELEFGAVHM
LDDQNSRFLNRFTGNGKIRGFEPNGLGPRDLNAPNQDALGGNYFWALRTELQFPLGLPEEYGITGGLFADAGSVWGLDNT
TGATPGDYPQEVDDGMKVRAAVGASIFWTTPIGPLRFNFAKALKKEDYDEEQTFDLTISTRF
>Mature_781_residues
TDRKLGKGALALISALAVAAPVAMVATPASAYVFSNVRIEGNQRIEPATILSYLDLPRGQDVSAGALNDAMQRLQNSGLF
ETVELVPSGGTLVVRVAEYPTINTVAFEGNRRLKNENLAEIVKSQSRRVYSPAQAEADAAAISQVYASQGRLAARVDPRI
IRRGSNQVDLVFEIREGDVTEIERIGFVGNRAFSDRRLRNVLQTKQAGILRTFIRRDTFAPERVPLDEKLLTDFYRSRGY
ADFRVQAVAPELARERDAFYITFQIHEGPRYTFGTINTVSEIPGVDATEFAAQNRVKRGAVYNPTDIDTTIRRMEALALR
KGLNFVNIEPRVTRNERSQTLDLTFALTRGPRVFVERIDIEGNTTTLDEVIRRQFATVEGDPFNPREIRNSAERLRALGF
FSDVQAESRPGSSPEQVIVDVNVEEQPTGSLNFGVSYGAATGVGFNISLSEKNFLGRGQQVDLAFSTGTDTQSSGLTFVE
PYFLGRNLRARAQAWYNTTDRLNSDYNTRTVGFLTGIEFPVSENGRVELRYKLSKDTLFDVEEIHMDSESSRLVGSSPIL
FDEQGGFFTSAVGYTYSYDSRIAGLDPVTSYRLRAGQDFAGLGGDVKSVTSTLYAGVESRAWRENVTMLAELEFGAVHML
DDQNSRFLNRFTGNGKIRGFEPNGLGPRDLNAPNQDALGGNYFWALRTELQFPLGLPEEYGITGGLFADAGSVWGLDNTT
GATPGDYPQEVDDGMKVRAAVGASIFWTTPIGPLRFNFAKALKKEDYDEEQTFDLTISTRF

Specific function: Unknown

COG id: COG4775

COG function: function code M; Outer membrane protein/protective antigen OMA87

Gene ontology:

Cell location: Cell outer membrane (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the surface antigen D15 family [H]

Homologues:

Organism=Escherichia coli, GI1786374, Length=797, Percent_Identity=26.3488080301129, Blast_Score=250, Evalue=2e-67,

Paralogues:

None

Copy number: 180 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 80 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 380 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 220 Molecules/Cell In: Stationary Phase, Ri

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000184
- InterPro:   IPR016474
- InterPro:   IPR010827 [H]

Pfam domain/function: PF01103 Bac_surface_Ag; PF07244 Surf_Ag_VNR [H]

EC number: NA

Molecular weight: Translated: 86532; Mature: 86401

Theoretical pI: Translated: 4.97; Mature: 4.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDRKLGKGALALISALAVAAPVAMVATPASAYVFSNVRIEGNQRIEPATILSYLDLPRG
CCCCCCCCHHHHHHHHHHHHHHHHHEECCCCEEEEEEEEECCCCCCCHHHHHHHHCCCCC
QDVSAGALNDAMQRLQNSGLFETVELVPSGGTLVVRVAEYPTINTVAFEGNRRLKNENLA
CCCCCHHHHHHHHHHHCCCCEEEEEEECCCCEEEEEEECCCCEEEEEECCCCCCCCCHHH
EIVKSQSRRVYSPAQAEADAAAISQVYASQGRLAARVDPRIIRRGSNQVDLVFEIREGDV
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCHHHHHCCCCCEEEEEEECCCCH
TEIERIGFVGNRAFSDRRLRNVLQTKQAGILRTFIRRDTFAPERVPLDEKLLTDFYRSRG
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCC
YADFRVQAVAPELARERDAFYITFQIHEGPRYTFGTINTVSEIPGVDATEFAAQNRVKRG
CCEEEEEEECHHHHCCCCEEEEEEEEECCCCEEECCCHHHHHCCCCCHHHHHHHHHHHCC
AVYNPTDIDTTIRRMEALALRKGLNFVNIEPRVTRNERSQTLDLTFALTRGPRVFVERID
CCCCCCCHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCEEEEEEEEECCCEEEEEEEE
IEGNTTTLDEVIRRQFATVEGDPFNPREIRNSAERLRALGFFSDVQAESRPGSSPEQVIV
CCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEE
DVNVEEQPTGSLNFGVSYGAATGVGFNISLSEKNFLGRGQQVDLAFSTGTDTQSSGLTFV
EECCCCCCCCCEECCEEECCCCCCCEEEEECCCHHCCCCCEEEEEEECCCCCCCCCCEEE
EPYFLGRNLRARAQAWYNTTDRLNSDYNTRTVGFLTGIEFPVSENGRVELRYKLSKDTLF
CHHHHCCCHHHHHHHHCCCHHHCCCCCCCEEEEEEECCCCCCCCCCEEEEEEEECCCCCC
DVEEIHMDSESSRLVGSSPILFDEQGGFFTSAVGYTYSYDSRIAGLDPVTSYRLRAGQDF
CHHHHHCCCCCCCEECCCCEEEECCCCEEEEECCEEEECCCCCCCCCCCHHHHHCCCCCC
AGLGGDVKSVTSTLYAGVESRAWRENVTMLAELEFGAVHMLDDQNSRFLNRFTGNGKIRG
CCCCCCHHHHHHHHHHCHHHHHHHCCCEEEEEECCCEEEEECCCCCHHHHHCCCCCEEEE
FEPNGLGPRDLNAPNQDALGGNYFWALRTELQFPLGLPEEYGITGGLFADAGSVWGLDNT
ECCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCHHCCCCCCEEECCCCCCCCCCC
TGATPGDYPQEVDDGMKVRAAVGASIFWTTPIGPLRFNFAKALKKEDYDEEQTFDLTIST
CCCCCCCCHHHHCCCCEEEEECCCEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEEEEEE
RF
CC
>Mature Secondary Structure 
TDRKLGKGALALISALAVAAPVAMVATPASAYVFSNVRIEGNQRIEPATILSYLDLPRG
CCCCCCCHHHHHHHHHHHHHHHHHEECCCCEEEEEEEEECCCCCCCHHHHHHHHCCCCC
QDVSAGALNDAMQRLQNSGLFETVELVPSGGTLVVRVAEYPTINTVAFEGNRRLKNENLA
CCCCCHHHHHHHHHHHCCCCEEEEEEECCCCEEEEEEECCCCEEEEEECCCCCCCCCHHH
EIVKSQSRRVYSPAQAEADAAAISQVYASQGRLAARVDPRIIRRGSNQVDLVFEIREGDV
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCHHHHHCCCCCEEEEEEECCCCH
TEIERIGFVGNRAFSDRRLRNVLQTKQAGILRTFIRRDTFAPERVPLDEKLLTDFYRSRG
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCC
YADFRVQAVAPELARERDAFYITFQIHEGPRYTFGTINTVSEIPGVDATEFAAQNRVKRG
CCEEEEEEECHHHHCCCCEEEEEEEEECCCCEEECCCHHHHHCCCCCHHHHHHHHHHHCC
AVYNPTDIDTTIRRMEALALRKGLNFVNIEPRVTRNERSQTLDLTFALTRGPRVFVERID
CCCCCCCHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCEEEEEEEEECCCEEEEEEEE
IEGNTTTLDEVIRRQFATVEGDPFNPREIRNSAERLRALGFFSDVQAESRPGSSPEQVIV
CCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEE
DVNVEEQPTGSLNFGVSYGAATGVGFNISLSEKNFLGRGQQVDLAFSTGTDTQSSGLTFV
EECCCCCCCCCEECCEEECCCCCCCEEEEECCCHHCCCCCEEEEEEECCCCCCCCCCEEE
EPYFLGRNLRARAQAWYNTTDRLNSDYNTRTVGFLTGIEFPVSENGRVELRYKLSKDTLF
CHHHHCCCHHHHHHHHCCCHHHCCCCCCCEEEEEEECCCCCCCCCCEEEEEEEECCCCCC
DVEEIHMDSESSRLVGSSPILFDEQGGFFTSAVGYTYSYDSRIAGLDPVTSYRLRAGQDF
CHHHHHCCCCCCCEECCCCEEEECCCCEEEEECCEEEECCCCCCCCCCCHHHHHCCCCCC
AGLGGDVKSVTSTLYAGVESRAWRENVTMLAELEFGAVHMLDDQNSRFLNRFTGNGKIRG
CCCCCCHHHHHHHHHHCHHHHHHHCCCEEEEEECCCEEEEECCCCCHHHHHCCCCCEEEE
FEPNGLGPRDLNAPNQDALGGNYFWALRTELQFPLGLPEEYGITGGLFADAGSVWGLDNT
ECCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCHHCCCCCCEEECCCCCCCCCCC
TGATPGDYPQEVDDGMKVRAAVGASIFWTTPIGPLRFNFAKALKKEDYDEEQTFDLTIST
CCCCCCCCHHHHCCCCEEEEECCCEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEEEEEE
RF
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10710307 [H]