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The map label for this gene is rimM

Identifier: 119386589

GI number: 119386589

Start: 1015905

End: 1016408

Strand: Direct

Name: rimM

Synonym: Pden_3882

Alternate gene names: 119386589

Gene position: 1015905-1016408 (Clockwise)

Preceding gene: 119386588

Following gene: 119386590

Centisome position: 58.72

GC content: 66.67

Gene sequence:

>504_bases
ATGACTGAGCGGGTCTGTGTCGGTGCGATCGCGGGCGCCTTCGGCGTCCGGGGCGAGGTGAGGCTGAAGAGCTTTACCTC
GCAACCAAACGATATTGCCGGATATTCCCCGCTTTACACCGAAGACGGAAACCGCTCGTTCACCATCCGCCTGACGCGGC
CGGTGACGGGCGGGCTTGGCGCCCGGCTATCGGGCGTCGAGACGCGCGAACAGGCCGAGGCGCTGAAGGGCGTGACGCTT
TGGGCCGACCGCGACAAGCTTCCGGCCCTGCCGGACGACGAATTCTATCATGCCGACCTGATCGGCCTGTCGGTCTATGA
CACCGGCGGGGCGCTTCTCGGCAAGGTCCGCGCGATCTACGACCATGGCGCCGGCGACATCCTGGAGATATTCGGACCCG
GTCGCCGGCAGGTGCTGCTCTTGCCCTTTACCCGCGCCTTCGTGCCCACGGTCGATCTGGCCGCCGGCCGCATCGTCGCC
GACCCGCCGGAAGAGCAGGAATGA

Upstream 100 bases:

>100_bases
AGAAAGGCGAACCCGGCAAGGCCGCGAAAGAGCGCGCCGAAAAGCGTGCCGCCCGTGAGGCCGCCGCCAACGCCCCGGCC
GAAGAAGCCGCTTCGGAATA

Downstream 100 bases:

>100_bases
GCGAGGCTCCGAAATCCCACGGCCGGCTGTCCATCCGCGCCAGCACGCAGCCGCGCGACCTCATGGCCGAGCCGCAGGTC
AAGGGCGCCTGGACCGCACA

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 167; Mature: 166

Protein sequence:

>167_residues
MTERVCVGAIAGAFGVRGEVRLKSFTSQPNDIAGYSPLYTEDGNRSFTIRLTRPVTGGLGARLSGVETREQAEALKGVTL
WADRDKLPALPDDEFYHADLIGLSVYDTGGALLGKVRAIYDHGAGDILEIFGPGRRQVLLLPFTRAFVPTVDLAAGRIVA
DPPEEQE

Sequences:

>Translated_167_residues
MTERVCVGAIAGAFGVRGEVRLKSFTSQPNDIAGYSPLYTEDGNRSFTIRLTRPVTGGLGARLSGVETREQAEALKGVTL
WADRDKLPALPDDEFYHADLIGLSVYDTGGALLGKVRAIYDHGAGDILEIFGPGRRQVLLLPFTRAFVPTVDLAAGRIVA
DPPEEQE
>Mature_166_residues
TERVCVGAIAGAFGVRGEVRLKSFTSQPNDIAGYSPLYTEDGNRSFTIRLTRPVTGGLGARLSGVETREQAEALKGVTLW
ADRDKLPALPDDEFYHADLIGLSVYDTGGALLGKVRAIYDHGAGDILEIFGPGRRQVLLLPFTRAFVPTVDLAAGRIVAD
PPEEQE

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

Organism=Escherichia coli, GI87082136, Length=167, Percent_Identity=28.1437125748503, Blast_Score=68, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_PARDP (A1B8V4)

Other databases:

- EMBL:   CP000490
- RefSeq:   YP_917644.1
- ProteinModelPortal:   A1B8V4
- SMR:   A1B8V4
- STRING:   A1B8V4
- GeneID:   4582433
- GenomeReviews:   CP000490_GR
- KEGG:   pde:Pden_3882
- eggNOG:   COG0806
- HOGENOM:   HBG703775
- OMA:   KNILNFG
- PhylomeDB:   A1B8V4
- ProtClustDB:   PRK13828
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 17987; Mature: 17855

Theoretical pI: Translated: 4.83; Mature: 4.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTERVCVGAIAGAFGVRGEVRLKSFTSQPNDIAGYSPLYTEDGNRSFTIRLTRPVTGGLG
CCCCEEHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCEEECCCCEEEEEEECCCCCCCCC
ARLSGVETREQAEALKGVTLWADRDKLPALPDDEFYHADLIGLSVYDTGGALLGKVRAIY
CEECCCCHHHHHHHHCCEEEEECCCCCCCCCCCCCEEEEEEEEEEECCCCHHHHHHHHEE
DHGAGDILEIFGPGRRQVLLLPFTRAFVPTVDLAAGRIVADPPEEQE
ECCCCCEEEECCCCCCEEEEEECCHHHCCEECCCCCEEECCCCCCCC
>Mature Secondary Structure 
TERVCVGAIAGAFGVRGEVRLKSFTSQPNDIAGYSPLYTEDGNRSFTIRLTRPVTGGLG
CCCEEHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCEEECCCCEEEEEEECCCCCCCCC
ARLSGVETREQAEALKGVTLWADRDKLPALPDDEFYHADLIGLSVYDTGGALLGKVRAIY
CEECCCCHHHHHHHHCCEEEEECCCCCCCCCCCCCEEEEEEEEEEECCCCHHHHHHHHEE
DHGAGDILEIFGPGRRQVLLLPFTRAFVPTVDLAAGRIVADPPEEQE
ECCCCCEEEECCCCCCEEEEEECCHHHCCEECCCCCEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA