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The map label for this gene is hupJ [H]

Identifier: 119385827

GI number: 119385827

Start: 289881

End: 290732

Strand: Direct

Name: hupJ [H]

Synonym: Pden_3105

Alternate gene names: 119385827

Gene position: 289881-290732 (Clockwise)

Preceding gene: 119385826

Following gene: 119385828

Centisome position: 16.76

GC content: 66.78

Gene sequence:

>852_bases
ATGAGCGTCGAGACCGCACGGGGCGGGTTCGAGGGGTCTTATCTGGGCGCCAATGACCGGATCAGCCCGCAGGCGATCAT
GGAATGCAAGATCTGCTGGACCAGCTATGACCCGGCCGAGGGGGATGAATACCGGCAGGTTCTGCCCGGCACGCCGTTCG
CGGCCTTGCCCGCCGACTGGAAATGTCCCGGCTGCGACGCGCCGAAGCAACAGTTCATCGTGCGCGAGGATCCCGGCTCT
GACGAGATGCGGATCGCGGCCGAGATCGAGCGGCGCTGCGCCCGGCTGGTCGCCGACTTCCGCGAGGTCTTCAACGCAAA
GATGCGCGACGTGCCGATCATCAATCAGGCGCTGCATGTCGAGGCGATGGCCTTTCGTCCCTGGCAGGGCGGCTTTCTGG
GGGTGCTGATCGCGCCCTGGTTCATGAACCTGATCTGGCTGCCGGGCGAGGATCAGGACTGGTCGGCCCTGAAGGCGGGC
GAGAAAGAGGTGGTCGCCTTTCCCTCGGGCGAATATGAATTCATCCATAACAGCCGCGAGATGACCGGCCCTTACAAGGC
CTGTTCGCTGTTCTCGCCGATGGCGGATTTCACCAGCCAGTTGCAGGCCGTCGAGGTCGCGCGCGCGGTGATGGTCGAGC
TGTTCAAACCCGAAAACCGCGACGGGACCGACCGCGCCGCCGAGATTCGCGCCGCCCGCGAGGCCGAGCTTGCACCGCCG
TCCGAGGCCGGACCGGCATCGGATGCACCGATCCCCAATCCGCGCCCCACGCGCCGGGCGCTGCTGACCGGCGGGCTGGC
CGCTGCTCCGGCAGAGGGCGACGATCCGGAGATATCCGGGGGCGTGGAATGA

Upstream 100 bases:

>100_bases
ATACCTTCGAGGTGACCGCCATGCCCGAGGTGGTGCTGGCCGCGCCCGAGGATCTGGCGGACAGCGCGGGCCGCATTCGT
GAAGTGCTGGGGGCGATCCG

Downstream 100 bases:

>100_bases
TCTCTGCCTCCGTCAGCTTTCGCCTTTTGCCCCGCGACGGAGGGCTTGCCCTTGCGCCGGGGGCGCAGGCGGGGCTGGCG
GTGGATGCGCTGATGACGGG

Product: rubredoxin-type Fe(Cys)4 protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 283; Mature: 282

Protein sequence:

>283_residues
MSVETARGGFEGSYLGANDRISPQAIMECKICWTSYDPAEGDEYRQVLPGTPFAALPADWKCPGCDAPKQQFIVREDPGS
DEMRIAAEIERRCARLVADFREVFNAKMRDVPIINQALHVEAMAFRPWQGGFLGVLIAPWFMNLIWLPGEDQDWSALKAG
EKEVVAFPSGEYEFIHNSREMTGPYKACSLFSPMADFTSQLQAVEVARAVMVELFKPENRDGTDRAAEIRAAREAELAPP
SEAGPASDAPIPNPRPTRRALLTGGLAAAPAEGDDPEISGGVE

Sequences:

>Translated_283_residues
MSVETARGGFEGSYLGANDRISPQAIMECKICWTSYDPAEGDEYRQVLPGTPFAALPADWKCPGCDAPKQQFIVREDPGS
DEMRIAAEIERRCARLVADFREVFNAKMRDVPIINQALHVEAMAFRPWQGGFLGVLIAPWFMNLIWLPGEDQDWSALKAG
EKEVVAFPSGEYEFIHNSREMTGPYKACSLFSPMADFTSQLQAVEVARAVMVELFKPENRDGTDRAAEIRAAREAELAPP
SEAGPASDAPIPNPRPTRRALLTGGLAAAPAEGDDPEISGGVE
>Mature_282_residues
SVETARGGFEGSYLGANDRISPQAIMECKICWTSYDPAEGDEYRQVLPGTPFAALPADWKCPGCDAPKQQFIVREDPGSD
EMRIAAEIERRCARLVADFREVFNAKMRDVPIINQALHVEAMAFRPWQGGFLGVLIAPWFMNLIWLPGEDQDWSALKAGE
KEVVAFPSGEYEFIHNSREMTGPYKACSLFSPMADFTSQLQAVEVARAVMVELFKPENRDGTDRAAEIRAAREAELAPPS
EAGPASDAPIPNPRPTRRALLTGGLAAAPAEGDDPEISGGVE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 rubredoxin-like domain [H]

Homologues:

Organism=Escherichia coli, GI1789366, Length=106, Percent_Identity=29.2452830188679, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004039
- InterPro:   IPR018527 [H]

Pfam domain/function: PF00301 Rubredoxin [H]

EC number: NA

Molecular weight: Translated: 30960; Mature: 30829

Theoretical pI: Translated: 4.36; Mature: 4.36

Prosite motif: PS00202 RUBREDOXIN ; PS50903 RUBREDOXIN_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVETARGGFEGSYLGANDRISPQAIMECKICWTSYDPAEGDEYRQVLPGTPFAALPADW
CCCCCCCCCCCCCEECCCCCCCHHHHEEEEEEECCCCCCCCCHHHHHCCCCCCCCCCCCC
KCPGCDAPKQQFIVREDPGSDEMRIAAEIERRCARLVADFREVFNAKMRDVPIINQALHV
CCCCCCCHHHCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHE
EAMAFRPWQGGFLGVLIAPWFMNLIWLPGEDQDWSALKAGEKEVVAFPSGEYEFIHNSRE
EEEEECCCCCCHHHHHHHHHHHHEEECCCCCCCCHHHHCCCCEEEECCCCCEEEEECCCC
MTGPYKACSLFSPMADFTSQLQAVEVARAVMVELFKPENRDGTDRAAEIRAAREAELAPP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCC
SEAGPASDAPIPNPRPTRRALLTGGLAAAPAEGDDPEISGGVE
CCCCCCCCCCCCCCCHHHHHHHHCCCEECCCCCCCCCCCCCCC
>Mature Secondary Structure 
SVETARGGFEGSYLGANDRISPQAIMECKICWTSYDPAEGDEYRQVLPGTPFAALPADW
CCCCCCCCCCCCEECCCCCCCHHHHEEEEEEECCCCCCCCCHHHHHCCCCCCCCCCCCC
KCPGCDAPKQQFIVREDPGSDEMRIAAEIERRCARLVADFREVFNAKMRDVPIINQALHV
CCCCCCCHHHCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHE
EAMAFRPWQGGFLGVLIAPWFMNLIWLPGEDQDWSALKAGEKEVVAFPSGEYEFIHNSRE
EEEEECCCCCCHHHHHHHHHHHHEEECCCCCCCCHHHHCCCCEEEECCCCCEEEEECCCC
MTGPYKACSLFSPMADFTSQLQAVEVARAVMVELFKPENRDGTDRAAEIRAAREAELAPP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCC
SEAGPASDAPIPNPRPTRRALLTGGLAAAPAEGDDPEISGGVE
CCCCCCCCCCCCCCCHHHHHHHHCCCEECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8497190; 2007559 [H]