| Definition | Paracoccus denitrificans PD1222 chromosome 2, complete sequence. |
|---|---|
| Accession | NC_008687 |
| Length | 1,730,097 |
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The map label for this gene is 119385786
Identifier: 119385786
GI number: 119385786
Start: 243789
End: 245771
Strand: Direct
Name: 119385786
Synonym: Pden_3064
Alternate gene names: NA
Gene position: 243789-245771 (Clockwise)
Preceding gene: 119385784
Following gene: 119385789
Centisome position: 14.09
GC content: 54.36
Gene sequence:
>1983_bases ATGCCCGGGGCATATTTCACGCAACAATGGAACGGTGTGGGAATGGCACTAGGGGCGCTTATACGGAGCACCCGGACTGA AGGCTGCGTAATTCTTCGGGGCCGGTCGGTTCTGGTCTGCGCCGTATCCGGTCTGGCTCTGATGACCTTTTCCTTTTCAG CCGGCGCTGATCCGGTTCAGCCCATCGGGATTCCGCTGAAGCATGTGCCGTCGGATGACGACGCAACGGATTTCAATTCA CTTGGCATAATGGTCGGAGTTAATGACGCGCATCCGCGGCTTTATCAGTTTGATACCGGCTCTGATTTGTTTGTCGGGCA GTTTGATGAGGCCATGTCCGATGTGCAGCCGCTGGCGGGGCACAAGCCCGATCTGTATGCCTATGGTGACGGCTCTTATG GCTATTGGATGCAGGAAATCCAGTTCGGAAGCATTGCCTACTATGATCCGGACGCGCCGGATAAACCCGTGGCGGTCATA CCCGGCAAACATGTTGCCGGGCGTATCATCGACTGGGTCTACAGTCAGGGTAGCGACGGTTACAAAAATCACAAGGTATC GGCCACGCCGATCGGGCACAGTGACGGGGTCGCGTATTACGCCGATATGGAGGTGCGTGACCGCATAATACATGATCAGC CAAGCGATCACCCACCATTTTACGGCACATTCGGCGCGGGAAATTTTACAGACGACAAAACCTATATTTCGGCCCCCGCC AGTCAGACAAAAACTGGCTATGTCATAGCCGCCAATGCGAATATGGGGGATAGTAAGACGCCGGGTCGTGCGCCCTGTCT TTCCCTGCATCTCACCCCGCAGATACGTGCGCAATTCACGGCGCTGATGCCGTGGGGAAAGCTGGACTATGAATTTTCCA TGCGGCAGTTCCCCGGTTCCGGCGCAAACGCTTCGAATGTGCATGACGGGAACTACCGCTATACAATATCTGTTCCGGTT GGGAAAAAGAAGCGGGCCATTGACTTCCGTGGGCCCATTCTCTTTGATACAGGAACACCTGAATTCATTTATGTTGATTC CGATGGGATGCTGGCGAAATTCCGGTCTAAAGGTTATCGACTTGAAAAATATGGCGATGATACCGTTGATATCAAGTTCT ATGGCTTTGACGATAAGCTGAACGATCTGGAATATGACGATGTTGATATCAGCCGGTTGTCCGATGAGGGCAGCGGGAAT TCTCTGACCATCGGGTTGCCTTTTTTTCAGTCGAACTCGATGATGTTCGATCTGGAAAACCGCATAACCGCCTTTACGCC TTATTTCGTCACTGCCAGCGGTTTTTCAACTGACGCCGGTGTGAATATTCCACATCTCGGTGTTGTCAACGGGGATGTCG GCAGCGTTGGATGGGTTGGCCTGGCCGGCAATCTGTCCGGGCAGGGTGATTTCACGATCGAAAAAGATTCGAATGTGCGC ATGACCGCCATCAACACCTATACCGGAGCAACACGCATTGCCAAAGATGGTTATCTGCATCTGGCCGGGCTTGGCAGTAT CGAGAAATCTGCGCATGTTTTCAACGAAGGAAATTTATTTATCGACCAGAAGGGCGCTTACATGACGCAATGGGGTGTGG ATAAATCCTTCGGTGACGCCGTTATTCGCGATATTTCGGGTGGTGGTGACATTGTTCTTGGCTCCAGGCGCCTGGTCGTG ACGGCAGCAACAGGGACGATAGGCGGTTCGATTACCGACTATGATGACAATGGCAAAAATCTCGGCGGCGGGCTGGTGCT TGCCGGAGGTAAACTGACCATTGCGGGCGACAATGATTATTCCGGCCTGACGGAAGTGGCCAGCGGCGCCGAAATGCACG TCACCGGCCAGCTTGCCGGCGATGTCTCGGTCCACGGGAAGTTGAGCGTGGACGGGCAGGTGTCCGGCACGGTGACGGTC CACGAAGGGGGCGAGCTTTCCGGGAATGGCGCGATCAGCGCTGTCCACCGGGTAAGCCGCTGA
Upstream 100 bases:
>100_bases ATTGACGAAACCTGCGTATACGCCGTCGCCATGAGTGGCGGCGTATCGCGGCAGTCGTCGCGGTGCGGGGTGAATACATC AAGCGATTAAAGGAGACGGC
Downstream 100 bases:
>100_bases ACTCGTCGTCGAGCGCCTCGGCCATGGCCGCCAGCCATTTCGGGCTGCATTCTGCATGCCGGTGATGGCGGCCGCCGACA CGGTTCGGATTCGATCCTGT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 660; Mature: 659
Protein sequence:
>660_residues MPGAYFTQQWNGVGMALGALIRSTRTEGCVILRGRSVLVCAVSGLALMTFSFSAGADPVQPIGIPLKHVPSDDDATDFNS LGIMVGVNDAHPRLYQFDTGSDLFVGQFDEAMSDVQPLAGHKPDLYAYGDGSYGYWMQEIQFGSIAYYDPDAPDKPVAVI PGKHVAGRIIDWVYSQGSDGYKNHKVSATPIGHSDGVAYYADMEVRDRIIHDQPSDHPPFYGTFGAGNFTDDKTYISAPA SQTKTGYVIAANANMGDSKTPGRAPCLSLHLTPQIRAQFTALMPWGKLDYEFSMRQFPGSGANASNVHDGNYRYTISVPV GKKKRAIDFRGPILFDTGTPEFIYVDSDGMLAKFRSKGYRLEKYGDDTVDIKFYGFDDKLNDLEYDDVDISRLSDEGSGN SLTIGLPFFQSNSMMFDLENRITAFTPYFVTASGFSTDAGVNIPHLGVVNGDVGSVGWVGLAGNLSGQGDFTIEKDSNVR MTAINTYTGATRIAKDGYLHLAGLGSIEKSAHVFNEGNLFIDQKGAYMTQWGVDKSFGDAVIRDISGGGDIVLGSRRLVV TAATGTIGGSITDYDDNGKNLGGGLVLAGGKLTIAGDNDYSGLTEVASGAEMHVTGQLAGDVSVHGKLSVDGQVSGTVTV HEGGELSGNGAISAVHRVSR
Sequences:
>Translated_660_residues MPGAYFTQQWNGVGMALGALIRSTRTEGCVILRGRSVLVCAVSGLALMTFSFSAGADPVQPIGIPLKHVPSDDDATDFNS LGIMVGVNDAHPRLYQFDTGSDLFVGQFDEAMSDVQPLAGHKPDLYAYGDGSYGYWMQEIQFGSIAYYDPDAPDKPVAVI PGKHVAGRIIDWVYSQGSDGYKNHKVSATPIGHSDGVAYYADMEVRDRIIHDQPSDHPPFYGTFGAGNFTDDKTYISAPA SQTKTGYVIAANANMGDSKTPGRAPCLSLHLTPQIRAQFTALMPWGKLDYEFSMRQFPGSGANASNVHDGNYRYTISVPV GKKKRAIDFRGPILFDTGTPEFIYVDSDGMLAKFRSKGYRLEKYGDDTVDIKFYGFDDKLNDLEYDDVDISRLSDEGSGN SLTIGLPFFQSNSMMFDLENRITAFTPYFVTASGFSTDAGVNIPHLGVVNGDVGSVGWVGLAGNLSGQGDFTIEKDSNVR MTAINTYTGATRIAKDGYLHLAGLGSIEKSAHVFNEGNLFIDQKGAYMTQWGVDKSFGDAVIRDISGGGDIVLGSRRLVV TAATGTIGGSITDYDDNGKNLGGGLVLAGGKLTIAGDNDYSGLTEVASGAEMHVTGQLAGDVSVHGKLSVDGQVSGTVTV HEGGELSGNGAISAVHRVSR >Mature_659_residues PGAYFTQQWNGVGMALGALIRSTRTEGCVILRGRSVLVCAVSGLALMTFSFSAGADPVQPIGIPLKHVPSDDDATDFNSL GIMVGVNDAHPRLYQFDTGSDLFVGQFDEAMSDVQPLAGHKPDLYAYGDGSYGYWMQEIQFGSIAYYDPDAPDKPVAVIP GKHVAGRIIDWVYSQGSDGYKNHKVSATPIGHSDGVAYYADMEVRDRIIHDQPSDHPPFYGTFGAGNFTDDKTYISAPAS QTKTGYVIAANANMGDSKTPGRAPCLSLHLTPQIRAQFTALMPWGKLDYEFSMRQFPGSGANASNVHDGNYRYTISVPVG KKKRAIDFRGPILFDTGTPEFIYVDSDGMLAKFRSKGYRLEKYGDDTVDIKFYGFDDKLNDLEYDDVDISRLSDEGSGNS LTIGLPFFQSNSMMFDLENRITAFTPYFVTASGFSTDAGVNIPHLGVVNGDVGSVGWVGLAGNLSGQGDFTIEKDSNVRM TAINTYTGATRIAKDGYLHLAGLGSIEKSAHVFNEGNLFIDQKGAYMTQWGVDKSFGDAVIRDISGGGDIVLGSRRLVVT AATGTIGGSITDYDDNGKNLGGGLVLAGGKLTIAGDNDYSGLTEVASGAEMHVTGQLAGDVSVHGKLSVDGQVSGTVTVH EGGELSGNGAISAVHRVSR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 70433; Mature: 70302
Theoretical pI: Translated: 4.86; Mature: 4.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPGAYFTQQWNGVGMALGALIRSTRTEGCVILRGRSVLVCAVSGLALMTFSFSAGADPVQ CCCCCEEECCCCHHHHHHHHHHHCCCCCEEEEECCCEEEEEECCEEEEEEEECCCCCCCC PIGIPLKHVPSDDDATDFNSLGIMVGVNDAHPRLYQFDTGSDLFVGQFDEAMSDVQPLAG CCCCCCEECCCCCCCCCCCCEEEEEEECCCCCEEEEECCCCCEEEECHHHHHHHHHHHCC HKPDLYAYGDGSYGYWMQEIQFGSIAYYDPDAPDKPVAVIPGKHVAGRIIDWVYSQGSDG CCCCEEEEECCCCCEEEEEEEECEEEEECCCCCCCCEEEECCCHHHHHHHHHHHCCCCCC YKNHKVSATPIGHSDGVAYYADMEVRDRIIHDQPSDHPPFYGTFGAGNFTDDKTYISAPA CCCCEEEECCCCCCCCEEEEECCHHHHHHHCCCCCCCCCCEEECCCCCCCCCCEEEECCC SQTKTGYVIAANANMGDSKTPGRAPCLSLHLTPQIRAQFTALMPWGKLDYEFSMRQFPGS CCCCCCEEEEECCCCCCCCCCCCCCEEEEEECHHHEEEEEEECCCCCCCEEEHHEECCCC GANASNVHDGNYRYTISVPVGKKKRAIDFRGPILFDTGTPEFIYVDSDGMLAKFRSKGYR CCCCCCEECCCEEEEEEECCCCCCCEEEECCCEEEECCCCCEEEECCCCCEEHHHHCCEE LEKYGDDTVDIKFYGFDDKLNDLEYDDVDISRLSDEGSGNSLTIGLPFFQSNSMMFDLEN EEECCCCEEEEEEEECCCCCCCCCCCCCCCEECCCCCCCCEEEEEEEEEECCCEEEEECC RITAFTPYFVTASGFSTDAGVNIPHLGVVNGDVGSVGWVGLAGNLSGQGDFTIEKDSNVR CEEEECCEEEEECCCCCCCCCCCCEEEEECCCCCCEEEEEEECCCCCCCCEEEECCCCEE MTAINTYTGATRIAKDGYLHLAGLGSIEKSAHVFNEGNLFIDQKGAYMTQWGVDKSFGDA EEEEEEECCCEEEECCCEEEEEECCCCCCCCEEEECCCEEEECCCCEEEECCCCCCCCCH VIRDISGGGDIVLGSRRLVVTAATGTIGGSITDYDDNGKNLGGGLVLAGGKLTIAGDNDY HHEECCCCCCEEECCCEEEEEEECCCCCCEEECCCCCCCCCCCEEEEECCEEEEECCCCC SGLTEVASGAEMHVTGQLAGDVSVHGKLSVDGQVSGTVTVHEGGELSGNGAISAVHRVSR CCHHHHHCCCEEEEEEEEECCEEEEEEEEECCEEEEEEEEECCCCCCCCCHHHHHHHHCC >Mature Secondary Structure PGAYFTQQWNGVGMALGALIRSTRTEGCVILRGRSVLVCAVSGLALMTFSFSAGADPVQ CCCCEEECCCCHHHHHHHHHHHCCCCCEEEEECCCEEEEEECCEEEEEEEECCCCCCCC PIGIPLKHVPSDDDATDFNSLGIMVGVNDAHPRLYQFDTGSDLFVGQFDEAMSDVQPLAG CCCCCCEECCCCCCCCCCCCEEEEEEECCCCCEEEEECCCCCEEEECHHHHHHHHHHHCC HKPDLYAYGDGSYGYWMQEIQFGSIAYYDPDAPDKPVAVIPGKHVAGRIIDWVYSQGSDG CCCCEEEEECCCCCEEEEEEEECEEEEECCCCCCCCEEEECCCHHHHHHHHHHHCCCCCC YKNHKVSATPIGHSDGVAYYADMEVRDRIIHDQPSDHPPFYGTFGAGNFTDDKTYISAPA CCCCEEEECCCCCCCCEEEEECCHHHHHHHCCCCCCCCCCEEECCCCCCCCCCEEEECCC SQTKTGYVIAANANMGDSKTPGRAPCLSLHLTPQIRAQFTALMPWGKLDYEFSMRQFPGS CCCCCCEEEEECCCCCCCCCCCCCCEEEEEECHHHEEEEEEECCCCCCCEEEHHEECCCC GANASNVHDGNYRYTISVPVGKKKRAIDFRGPILFDTGTPEFIYVDSDGMLAKFRSKGYR CCCCCCEECCCEEEEEEECCCCCCCEEEECCCEEEECCCCCEEEECCCCCEEHHHHCCEE LEKYGDDTVDIKFYGFDDKLNDLEYDDVDISRLSDEGSGNSLTIGLPFFQSNSMMFDLEN EEECCCCEEEEEEEECCCCCCCCCCCCCCCEECCCCCCCCEEEEEEEEEECCCEEEEECC RITAFTPYFVTASGFSTDAGVNIPHLGVVNGDVGSVGWVGLAGNLSGQGDFTIEKDSNVR CEEEECCEEEEECCCCCCCCCCCCEEEEECCCCCCEEEEEEECCCCCCCCEEEECCCCEE MTAINTYTGATRIAKDGYLHLAGLGSIEKSAHVFNEGNLFIDQKGAYMTQWGVDKSFGDA EEEEEEECCCEEEECCCEEEEEECCCCCCCCEEEECCCEEEECCCCEEEECCCCCCCCCH VIRDISGGGDIVLGSRRLVVTAATGTIGGSITDYDDNGKNLGGGLVLAGGKLTIAGDNDY HHEECCCCCCEEECCCEEEEEEECCCCCCEEECCCCCCCCCCCEEEEECCEEEEECCCCC SGLTEVASGAEMHVTGQLAGDVSVHGKLSVDGQVSGTVTVHEGGELSGNGAISAVHRVSR CCHHHHHCCCEEEEEEEEECCEEEEEEEEECCEEEEEEEEECCCCCCCCCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA