Definition Paracoccus denitrificans PD1222 chromosome 2, complete sequence.
Accession NC_008687
Length 1,730,097

Click here to switch to the map view.

The map label for this gene is 119385786

Identifier: 119385786

GI number: 119385786

Start: 243789

End: 245771

Strand: Direct

Name: 119385786

Synonym: Pden_3064

Alternate gene names: NA

Gene position: 243789-245771 (Clockwise)

Preceding gene: 119385784

Following gene: 119385789

Centisome position: 14.09

GC content: 54.36

Gene sequence:

>1983_bases
ATGCCCGGGGCATATTTCACGCAACAATGGAACGGTGTGGGAATGGCACTAGGGGCGCTTATACGGAGCACCCGGACTGA
AGGCTGCGTAATTCTTCGGGGCCGGTCGGTTCTGGTCTGCGCCGTATCCGGTCTGGCTCTGATGACCTTTTCCTTTTCAG
CCGGCGCTGATCCGGTTCAGCCCATCGGGATTCCGCTGAAGCATGTGCCGTCGGATGACGACGCAACGGATTTCAATTCA
CTTGGCATAATGGTCGGAGTTAATGACGCGCATCCGCGGCTTTATCAGTTTGATACCGGCTCTGATTTGTTTGTCGGGCA
GTTTGATGAGGCCATGTCCGATGTGCAGCCGCTGGCGGGGCACAAGCCCGATCTGTATGCCTATGGTGACGGCTCTTATG
GCTATTGGATGCAGGAAATCCAGTTCGGAAGCATTGCCTACTATGATCCGGACGCGCCGGATAAACCCGTGGCGGTCATA
CCCGGCAAACATGTTGCCGGGCGTATCATCGACTGGGTCTACAGTCAGGGTAGCGACGGTTACAAAAATCACAAGGTATC
GGCCACGCCGATCGGGCACAGTGACGGGGTCGCGTATTACGCCGATATGGAGGTGCGTGACCGCATAATACATGATCAGC
CAAGCGATCACCCACCATTTTACGGCACATTCGGCGCGGGAAATTTTACAGACGACAAAACCTATATTTCGGCCCCCGCC
AGTCAGACAAAAACTGGCTATGTCATAGCCGCCAATGCGAATATGGGGGATAGTAAGACGCCGGGTCGTGCGCCCTGTCT
TTCCCTGCATCTCACCCCGCAGATACGTGCGCAATTCACGGCGCTGATGCCGTGGGGAAAGCTGGACTATGAATTTTCCA
TGCGGCAGTTCCCCGGTTCCGGCGCAAACGCTTCGAATGTGCATGACGGGAACTACCGCTATACAATATCTGTTCCGGTT
GGGAAAAAGAAGCGGGCCATTGACTTCCGTGGGCCCATTCTCTTTGATACAGGAACACCTGAATTCATTTATGTTGATTC
CGATGGGATGCTGGCGAAATTCCGGTCTAAAGGTTATCGACTTGAAAAATATGGCGATGATACCGTTGATATCAAGTTCT
ATGGCTTTGACGATAAGCTGAACGATCTGGAATATGACGATGTTGATATCAGCCGGTTGTCCGATGAGGGCAGCGGGAAT
TCTCTGACCATCGGGTTGCCTTTTTTTCAGTCGAACTCGATGATGTTCGATCTGGAAAACCGCATAACCGCCTTTACGCC
TTATTTCGTCACTGCCAGCGGTTTTTCAACTGACGCCGGTGTGAATATTCCACATCTCGGTGTTGTCAACGGGGATGTCG
GCAGCGTTGGATGGGTTGGCCTGGCCGGCAATCTGTCCGGGCAGGGTGATTTCACGATCGAAAAAGATTCGAATGTGCGC
ATGACCGCCATCAACACCTATACCGGAGCAACACGCATTGCCAAAGATGGTTATCTGCATCTGGCCGGGCTTGGCAGTAT
CGAGAAATCTGCGCATGTTTTCAACGAAGGAAATTTATTTATCGACCAGAAGGGCGCTTACATGACGCAATGGGGTGTGG
ATAAATCCTTCGGTGACGCCGTTATTCGCGATATTTCGGGTGGTGGTGACATTGTTCTTGGCTCCAGGCGCCTGGTCGTG
ACGGCAGCAACAGGGACGATAGGCGGTTCGATTACCGACTATGATGACAATGGCAAAAATCTCGGCGGCGGGCTGGTGCT
TGCCGGAGGTAAACTGACCATTGCGGGCGACAATGATTATTCCGGCCTGACGGAAGTGGCCAGCGGCGCCGAAATGCACG
TCACCGGCCAGCTTGCCGGCGATGTCTCGGTCCACGGGAAGTTGAGCGTGGACGGGCAGGTGTCCGGCACGGTGACGGTC
CACGAAGGGGGCGAGCTTTCCGGGAATGGCGCGATCAGCGCTGTCCACCGGGTAAGCCGCTGA

Upstream 100 bases:

>100_bases
ATTGACGAAACCTGCGTATACGCCGTCGCCATGAGTGGCGGCGTATCGCGGCAGTCGTCGCGGTGCGGGGTGAATACATC
AAGCGATTAAAGGAGACGGC

Downstream 100 bases:

>100_bases
ACTCGTCGTCGAGCGCCTCGGCCATGGCCGCCAGCCATTTCGGGCTGCATTCTGCATGCCGGTGATGGCGGCCGCCGACA
CGGTTCGGATTCGATCCTGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 660; Mature: 659

Protein sequence:

>660_residues
MPGAYFTQQWNGVGMALGALIRSTRTEGCVILRGRSVLVCAVSGLALMTFSFSAGADPVQPIGIPLKHVPSDDDATDFNS
LGIMVGVNDAHPRLYQFDTGSDLFVGQFDEAMSDVQPLAGHKPDLYAYGDGSYGYWMQEIQFGSIAYYDPDAPDKPVAVI
PGKHVAGRIIDWVYSQGSDGYKNHKVSATPIGHSDGVAYYADMEVRDRIIHDQPSDHPPFYGTFGAGNFTDDKTYISAPA
SQTKTGYVIAANANMGDSKTPGRAPCLSLHLTPQIRAQFTALMPWGKLDYEFSMRQFPGSGANASNVHDGNYRYTISVPV
GKKKRAIDFRGPILFDTGTPEFIYVDSDGMLAKFRSKGYRLEKYGDDTVDIKFYGFDDKLNDLEYDDVDISRLSDEGSGN
SLTIGLPFFQSNSMMFDLENRITAFTPYFVTASGFSTDAGVNIPHLGVVNGDVGSVGWVGLAGNLSGQGDFTIEKDSNVR
MTAINTYTGATRIAKDGYLHLAGLGSIEKSAHVFNEGNLFIDQKGAYMTQWGVDKSFGDAVIRDISGGGDIVLGSRRLVV
TAATGTIGGSITDYDDNGKNLGGGLVLAGGKLTIAGDNDYSGLTEVASGAEMHVTGQLAGDVSVHGKLSVDGQVSGTVTV
HEGGELSGNGAISAVHRVSR

Sequences:

>Translated_660_residues
MPGAYFTQQWNGVGMALGALIRSTRTEGCVILRGRSVLVCAVSGLALMTFSFSAGADPVQPIGIPLKHVPSDDDATDFNS
LGIMVGVNDAHPRLYQFDTGSDLFVGQFDEAMSDVQPLAGHKPDLYAYGDGSYGYWMQEIQFGSIAYYDPDAPDKPVAVI
PGKHVAGRIIDWVYSQGSDGYKNHKVSATPIGHSDGVAYYADMEVRDRIIHDQPSDHPPFYGTFGAGNFTDDKTYISAPA
SQTKTGYVIAANANMGDSKTPGRAPCLSLHLTPQIRAQFTALMPWGKLDYEFSMRQFPGSGANASNVHDGNYRYTISVPV
GKKKRAIDFRGPILFDTGTPEFIYVDSDGMLAKFRSKGYRLEKYGDDTVDIKFYGFDDKLNDLEYDDVDISRLSDEGSGN
SLTIGLPFFQSNSMMFDLENRITAFTPYFVTASGFSTDAGVNIPHLGVVNGDVGSVGWVGLAGNLSGQGDFTIEKDSNVR
MTAINTYTGATRIAKDGYLHLAGLGSIEKSAHVFNEGNLFIDQKGAYMTQWGVDKSFGDAVIRDISGGGDIVLGSRRLVV
TAATGTIGGSITDYDDNGKNLGGGLVLAGGKLTIAGDNDYSGLTEVASGAEMHVTGQLAGDVSVHGKLSVDGQVSGTVTV
HEGGELSGNGAISAVHRVSR
>Mature_659_residues
PGAYFTQQWNGVGMALGALIRSTRTEGCVILRGRSVLVCAVSGLALMTFSFSAGADPVQPIGIPLKHVPSDDDATDFNSL
GIMVGVNDAHPRLYQFDTGSDLFVGQFDEAMSDVQPLAGHKPDLYAYGDGSYGYWMQEIQFGSIAYYDPDAPDKPVAVIP
GKHVAGRIIDWVYSQGSDGYKNHKVSATPIGHSDGVAYYADMEVRDRIIHDQPSDHPPFYGTFGAGNFTDDKTYISAPAS
QTKTGYVIAANANMGDSKTPGRAPCLSLHLTPQIRAQFTALMPWGKLDYEFSMRQFPGSGANASNVHDGNYRYTISVPVG
KKKRAIDFRGPILFDTGTPEFIYVDSDGMLAKFRSKGYRLEKYGDDTVDIKFYGFDDKLNDLEYDDVDISRLSDEGSGNS
LTIGLPFFQSNSMMFDLENRITAFTPYFVTASGFSTDAGVNIPHLGVVNGDVGSVGWVGLAGNLSGQGDFTIEKDSNVRM
TAINTYTGATRIAKDGYLHLAGLGSIEKSAHVFNEGNLFIDQKGAYMTQWGVDKSFGDAVIRDISGGGDIVLGSRRLVVT
AATGTIGGSITDYDDNGKNLGGGLVLAGGKLTIAGDNDYSGLTEVASGAEMHVTGQLAGDVSVHGKLSVDGQVSGTVTVH
EGGELSGNGAISAVHRVSR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 70433; Mature: 70302

Theoretical pI: Translated: 4.86; Mature: 4.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPGAYFTQQWNGVGMALGALIRSTRTEGCVILRGRSVLVCAVSGLALMTFSFSAGADPVQ
CCCCCEEECCCCHHHHHHHHHHHCCCCCEEEEECCCEEEEEECCEEEEEEEECCCCCCCC
PIGIPLKHVPSDDDATDFNSLGIMVGVNDAHPRLYQFDTGSDLFVGQFDEAMSDVQPLAG
CCCCCCEECCCCCCCCCCCCEEEEEEECCCCCEEEEECCCCCEEEECHHHHHHHHHHHCC
HKPDLYAYGDGSYGYWMQEIQFGSIAYYDPDAPDKPVAVIPGKHVAGRIIDWVYSQGSDG
CCCCEEEEECCCCCEEEEEEEECEEEEECCCCCCCCEEEECCCHHHHHHHHHHHCCCCCC
YKNHKVSATPIGHSDGVAYYADMEVRDRIIHDQPSDHPPFYGTFGAGNFTDDKTYISAPA
CCCCEEEECCCCCCCCEEEEECCHHHHHHHCCCCCCCCCCEEECCCCCCCCCCEEEECCC
SQTKTGYVIAANANMGDSKTPGRAPCLSLHLTPQIRAQFTALMPWGKLDYEFSMRQFPGS
CCCCCCEEEEECCCCCCCCCCCCCCEEEEEECHHHEEEEEEECCCCCCCEEEHHEECCCC
GANASNVHDGNYRYTISVPVGKKKRAIDFRGPILFDTGTPEFIYVDSDGMLAKFRSKGYR
CCCCCCEECCCEEEEEEECCCCCCCEEEECCCEEEECCCCCEEEECCCCCEEHHHHCCEE
LEKYGDDTVDIKFYGFDDKLNDLEYDDVDISRLSDEGSGNSLTIGLPFFQSNSMMFDLEN
EEECCCCEEEEEEEECCCCCCCCCCCCCCCEECCCCCCCCEEEEEEEEEECCCEEEEECC
RITAFTPYFVTASGFSTDAGVNIPHLGVVNGDVGSVGWVGLAGNLSGQGDFTIEKDSNVR
CEEEECCEEEEECCCCCCCCCCCCEEEEECCCCCCEEEEEEECCCCCCCCEEEECCCCEE
MTAINTYTGATRIAKDGYLHLAGLGSIEKSAHVFNEGNLFIDQKGAYMTQWGVDKSFGDA
EEEEEEECCCEEEECCCEEEEEECCCCCCCCEEEECCCEEEECCCCEEEECCCCCCCCCH
VIRDISGGGDIVLGSRRLVVTAATGTIGGSITDYDDNGKNLGGGLVLAGGKLTIAGDNDY
HHEECCCCCCEEECCCEEEEEEECCCCCCEEECCCCCCCCCCCEEEEECCEEEEECCCCC
SGLTEVASGAEMHVTGQLAGDVSVHGKLSVDGQVSGTVTVHEGGELSGNGAISAVHRVSR
CCHHHHHCCCEEEEEEEEECCEEEEEEEEECCEEEEEEEEECCCCCCCCCHHHHHHHHCC
>Mature Secondary Structure 
PGAYFTQQWNGVGMALGALIRSTRTEGCVILRGRSVLVCAVSGLALMTFSFSAGADPVQ
CCCCEEECCCCHHHHHHHHHHHCCCCCEEEEECCCEEEEEECCEEEEEEEECCCCCCCC
PIGIPLKHVPSDDDATDFNSLGIMVGVNDAHPRLYQFDTGSDLFVGQFDEAMSDVQPLAG
CCCCCCEECCCCCCCCCCCCEEEEEEECCCCCEEEEECCCCCEEEECHHHHHHHHHHHCC
HKPDLYAYGDGSYGYWMQEIQFGSIAYYDPDAPDKPVAVIPGKHVAGRIIDWVYSQGSDG
CCCCEEEEECCCCCEEEEEEEECEEEEECCCCCCCCEEEECCCHHHHHHHHHHHCCCCCC
YKNHKVSATPIGHSDGVAYYADMEVRDRIIHDQPSDHPPFYGTFGAGNFTDDKTYISAPA
CCCCEEEECCCCCCCCEEEEECCHHHHHHHCCCCCCCCCCEEECCCCCCCCCCEEEECCC
SQTKTGYVIAANANMGDSKTPGRAPCLSLHLTPQIRAQFTALMPWGKLDYEFSMRQFPGS
CCCCCCEEEEECCCCCCCCCCCCCCEEEEEECHHHEEEEEEECCCCCCCEEEHHEECCCC
GANASNVHDGNYRYTISVPVGKKKRAIDFRGPILFDTGTPEFIYVDSDGMLAKFRSKGYR
CCCCCCEECCCEEEEEEECCCCCCCEEEECCCEEEECCCCCEEEECCCCCEEHHHHCCEE
LEKYGDDTVDIKFYGFDDKLNDLEYDDVDISRLSDEGSGNSLTIGLPFFQSNSMMFDLEN
EEECCCCEEEEEEEECCCCCCCCCCCCCCCEECCCCCCCCEEEEEEEEEECCCEEEEECC
RITAFTPYFVTASGFSTDAGVNIPHLGVVNGDVGSVGWVGLAGNLSGQGDFTIEKDSNVR
CEEEECCEEEEECCCCCCCCCCCCEEEEECCCCCCEEEEEEECCCCCCCCEEEECCCCEE
MTAINTYTGATRIAKDGYLHLAGLGSIEKSAHVFNEGNLFIDQKGAYMTQWGVDKSFGDA
EEEEEEECCCEEEECCCEEEEEECCCCCCCCEEEECCCEEEECCCCEEEECCCCCCCCCH
VIRDISGGGDIVLGSRRLVVTAATGTIGGSITDYDDNGKNLGGGLVLAGGKLTIAGDNDY
HHEECCCCCCEEECCCEEEEEEECCCCCCEEECCCCCCCCCCCEEEEECCEEEEECCCCC
SGLTEVASGAEMHVTGQLAGDVSVHGKLSVDGQVSGTVTVHEGGELSGNGAISAVHRVSR
CCHHHHHCCCEEEEEEEEECCEEEEEEEEECCEEEEEEEEECCCCCCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA