| Definition | Paracoccus denitrificans PD1222 chromosome 2, complete sequence. |
|---|---|
| Accession | NC_008687 |
| Length | 1,730,097 |
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The map label for this gene is 119385685
Identifier: 119385685
GI number: 119385685
Start: 128477
End: 129601
Strand: Direct
Name: 119385685
Synonym: Pden_2960
Alternate gene names: NA
Gene position: 128477-129601 (Clockwise)
Preceding gene: 119385684
Following gene: 119385686
Centisome position: 7.43
GC content: 70.4
Gene sequence:
>1125_bases ATGACCGACCTGACCCTGCGCTTTGCCTTCCTGACCGAGGCCGACCGGCTGAAATCCGTCGAGCGGGCGAATGTGCTGAT GGACCTGTCGCGGCCGGAAAACAGCGCCGAGCACAGCTGGCACGTCGCGCTTTACGCGCTGGTCTTCGGCGCCTCGGACC GTGCCATCGCGATGCTGCTGCTGCACGATCTGGTCGAGATCGACTGCGGCGACCATCCGATCCATCTGGTCCATGACACG GCTGCCGTGCAGGCGGCCGAGGACGCCGCCGCGCGCCGGCTGTTCGGCATGTTGCCCGGCGGCGAGACGCTGCTGGCGCT GTGGCGGGAGTTCGAGGCCGGCGAAAGCCCGGACGCCCGCATCGCCAAGCGCATGGACCACGTCCAGCCGCTGTTCCAGG TGCTTTGCGCGCCCCGGCCCCTGGCCGATCATGTCGGAATCGTCCGCGACAACATGACATCGGGCCGTGCCCGGCGGCTG TGGGCGGAATGGCCCGAGGCGATGGAGGCGGCGCAGGCCCTGCTGGAGGGCCGCGCGCCCTGCGGCGAACTGGCGCAGCG CCTGGCCTTTCTGGCCGAGGCCGACCGGCTGAAATCGGTGCTGCGCGCCAGCCTGCTGTGCGACGGCTCGCGGCGCGAAA ACAGCGCCGAGCACAGCTGGCACCTGGCGCTTTACGCGCTGGTCATGGCGGCCCATGCCGGGCCGGGGGTGGAGATCGGC CGGGTGATCCGCATGCTGCTGCTGCACGACCTGGTCGAGATCGACACCGGCGACGTGCCGATCCATGCGCAGAACGGCGC CGCCCATCACGGTGCCGCGCAGTTGCAGGCCGAGGCCGAGGCGGCGGAACGGATCTTCGGGCTGCTGCCCAAGGCCCAGG GGGCTGAATTGCGCGCGCTCTGGACCGAGTTCGAGGCGAACGAGACCCCCGACGCGGTCTTCGCCAAGTCGCTCGACCGG GCGCAGCCGGTGATGCAGAACATCGCCTCGGGCGGCGGCACCTGGGTCGAATACCGGGTGAGCTACGAGCAACTGGTCGA GCGCGTGGGCCTGCGCATCGAGCGCGGGGCGCCGACGCTGTGGACCTGGCTCAGCGAAAGCGCGCGGGTCTATTTCCGCG GCTGA
Upstream 100 bases:
>100_bases AAGCCGATGATCGACACGGTGCAGGCCTATGTGCGCCGCCGCCTGACCGAGAACACCCGCTAGGAAACGGGGCCGGTGCC GCCGGCCCCAGGCATTCGAC
Downstream 100 bases:
>100_bases TCCCGAAGGGCGGCGGGGTGCGGGGCGGCAATCGGTATGCAATCGCATACCGGGCTTTCCTTTCGCGGCGAATGCGGCTA TAGCGCGGCCGAGCCGAATC
Product: metal dependent phosphohydrolase
Products: NA
Alternate protein names: HD Domain Protein; Metal-Dependent Phosphohydrolase; HD Domain-Containing Protein; Metal-Dependent Phosphohydrolase HD Subdomain; HD Superfamily Hydrolase; Hydrolase; Metal-Dependent Phosphohydrolase HD Region; HD Superfamily Hydrolase-Like Protein; Hydrolases Of HD Superfamily; Hydrolase Of HD Superfamily; Metal-Dependent Phosphoesterase; Xin-Antitoxin System Toxin Component PIN Family; HD Superfamily Metal-Dependent Phosphohydrolase; HD Domain-Containing; HDDC2 Protein
Number of amino acids: Translated: 374; Mature: 373
Protein sequence:
>374_residues MTDLTLRFAFLTEADRLKSVERANVLMDLSRPENSAEHSWHVALYALVFGASDRAIAMLLLHDLVEIDCGDHPIHLVHDT AAVQAAEDAAARRLFGMLPGGETLLALWREFEAGESPDARIAKRMDHVQPLFQVLCAPRPLADHVGIVRDNMTSGRARRL WAEWPEAMEAAQALLEGRAPCGELAQRLAFLAEADRLKSVLRASLLCDGSRRENSAEHSWHLALYALVMAAHAGPGVEIG RVIRMLLLHDLVEIDTGDVPIHAQNGAAHHGAAQLQAEAEAAERIFGLLPKAQGAELRALWTEFEANETPDAVFAKSLDR AQPVMQNIASGGGTWVEYRVSYEQLVERVGLRIERGAPTLWTWLSESARVYFRG
Sequences:
>Translated_374_residues MTDLTLRFAFLTEADRLKSVERANVLMDLSRPENSAEHSWHVALYALVFGASDRAIAMLLLHDLVEIDCGDHPIHLVHDT AAVQAAEDAAARRLFGMLPGGETLLALWREFEAGESPDARIAKRMDHVQPLFQVLCAPRPLADHVGIVRDNMTSGRARRL WAEWPEAMEAAQALLEGRAPCGELAQRLAFLAEADRLKSVLRASLLCDGSRRENSAEHSWHLALYALVMAAHAGPGVEIG RVIRMLLLHDLVEIDTGDVPIHAQNGAAHHGAAQLQAEAEAAERIFGLLPKAQGAELRALWTEFEANETPDAVFAKSLDR AQPVMQNIASGGGTWVEYRVSYEQLVERVGLRIERGAPTLWTWLSESARVYFRG >Mature_373_residues TDLTLRFAFLTEADRLKSVERANVLMDLSRPENSAEHSWHVALYALVFGASDRAIAMLLLHDLVEIDCGDHPIHLVHDTA AVQAAEDAAARRLFGMLPGGETLLALWREFEAGESPDARIAKRMDHVQPLFQVLCAPRPLADHVGIVRDNMTSGRARRLW AEWPEAMEAAQALLEGRAPCGELAQRLAFLAEADRLKSVLRASLLCDGSRRENSAEHSWHLALYALVMAAHAGPGVEIGR VIRMLLLHDLVEIDTGDVPIHAQNGAAHHGAAQLQAEAEAAERIFGLLPKAQGAELRALWTEFEANETPDAVFAKSLDRA QPVMQNIASGGGTWVEYRVSYEQLVERVGLRIERGAPTLWTWLSESARVYFRG
Specific function: Unknown
COG id: COG1896
COG function: function code R; Predicted hydrolases of HD superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41258; Mature: 41127
Theoretical pI: Translated: 5.55; Mature: 5.55
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDLTLRFAFLTEADRLKSVERANVLMDLSRPENSAEHSWHVALYALVFGASDRAIAMLL CCCEEEEHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHH LHDLVEIDCGDHPIHLVHDTAAVQAAEDAAARRLFGMLPGGETLLALWREFEAGESPDAR HHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHH IAKRMDHVQPLFQVLCAPRPLADHVGIVRDNMTSGRARRLWAEWPEAMEAAQALLEGRAP HHHHHHHHHHHHHHHHCCCCCHHHCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC CGELAQRLAFLAEADRLKSVLRASLLCDGSRRENSAEHSWHLALYALVMAAHAGPGVEIG HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHH RVIRMLLLHDLVEIDTGDVPIHAQNGAAHHGAAQLQAEAEAAERIFGLLPKAQGAELRAL HHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHH WTEFEANETPDAVFAKSLDRAQPVMQNIASGGGTWVEYRVSYEQLVERVGLRIERGAPTL HHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHCCEEECCCCHH WTWLSESARVYFRG HHHHCCCCEEEECC >Mature Secondary Structure TDLTLRFAFLTEADRLKSVERANVLMDLSRPENSAEHSWHVALYALVFGASDRAIAMLL CCEEEEHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHH LHDLVEIDCGDHPIHLVHDTAAVQAAEDAAARRLFGMLPGGETLLALWREFEAGESPDAR HHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHH IAKRMDHVQPLFQVLCAPRPLADHVGIVRDNMTSGRARRLWAEWPEAMEAAQALLEGRAP HHHHHHHHHHHHHHHHCCCCCHHHCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC CGELAQRLAFLAEADRLKSVLRASLLCDGSRRENSAEHSWHLALYALVMAAHAGPGVEIG HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHH RVIRMLLLHDLVEIDTGDVPIHAQNGAAHHGAAQLQAEAEAAERIFGLLPKAQGAELRAL HHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHH WTEFEANETPDAVFAKSLDRAQPVMQNIASGGGTWVEYRVSYEQLVERVGLRIERGAPTL HHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHCCEEECCCCHH WTWLSESARVYFRG HHHHCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA